Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 0.0e+00 2154.8 1239 100.0
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 0.0e+00 1233.0 1239 66.6
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 8.2e-273 944.5 1239 56.2
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 4.1e-272 942.2 1239 55.9
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 6.9e-264 914.8 531 89.8
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 4.6e-199 699.5 1246 45.7
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 2.4e-192 677.2 1248 45.3
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 1.0e-190 671.8 1246 44.5
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 2.3e-190 670.6 1245 44.6
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 2.8e-188 663.7 1244 44.9
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 3.6e-188 663.3 1280 37.4
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 4.8e-188 662.9 1241 44.6
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 3.1e-187 660.2 1244 44.4
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 3.1e-187 660.2 1237 44.7
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 3.1e-187 660.2 1244 44.5
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 3.1e-187 660.2 1267 44.6
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 2.0e-186 657.5 1246 44.6
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 4.5e-186 656.4 1244 45.4
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 4.5e-186 656.4 1244 45.4
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 2.9e-185 653.7 1242 44.1
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 1.1e-184 651.7 1249 44.3
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 1.4e-184 651.4 540 66.3
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.4e-184 651.4 1246 44.7
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 1.2e-183 648.3 1246 44.0
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-183 648.3 1247 44.3
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 1.6e-183 647.9 1250 44.8
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 2.7e-183 647.1 1247 44.1
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 1.3e-182 644.8 1249 45.3
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 1.3e-182 644.8 1246 44.3
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 3.9e-182 643.3 1248 43.4
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 5.1e-182 642.9 1246 44.5
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.1e-181 641.7 1246 44.4
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.5e-181 641.3 562 63.0
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 9.6e-181 638.6 1246 43.8
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.8e-180 637.1 1244 45.2
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.8e-180 636.3 1244 45.2
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 1.1e-179 635.2 542 64.0
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 1.1e-179 635.2 1245 45.2
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 2.4e-179 634.0 1248 43.8
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-179 633.6 1245 45.1
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 4.0e-179 633.3 1245 43.2
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 9.0e-179 632.1 1243 43.7
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 3.4e-178 630.2 1242 43.6
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.5e-178 629.8 1272 43.6
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 9.9e-178 628.6 1249 42.8
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 2.9e-177 627.1 1243 43.3
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 2.9e-177 627.1 1242 43.7
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 8.4e-177 625.5 1243 43.0
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 2.4e-176 624.0 1242 43.6
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 5.5e-176 622.9 1242 43.9
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 5.5e-176 622.9 1249 43.1
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 5.5e-176 622.9 1242 43.6
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 9.3e-176 622.1 1250 43.4
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 1.2e-175 621.7 1243 43.2
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 1.2e-175 621.7 1242 43.6
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 3.0e-174 617.1 1249 42.8
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 6.7e-174 615.9 1245 43.6
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 8.7e-174 615.5 1245 42.3
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.3e-173 613.2 1244 37.5
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 1.3e-172 611.7 1255 42.8
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 3.7e-172 610.1 1245 43.0
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.8e-171 607.8 1280 41.9
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 3.1e-171 607.1 1248 42.1
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 2.0e-170 604.4 1244 38.0
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 2.6e-170 604.0 1241 42.8
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 1.3e-169 601.7 1243 43.3
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 3.8e-169 600.1 1245 42.8
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 4.9e-169 599.7 560 61.6
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 8.4e-169 599.0 1243 42.4
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 4.2e-168 596.7 1254 41.8
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 1.6e-167 594.7 1249 42.2
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 2.7e-167 594.0 1243 42.0
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 1.0e-166 592.0 544 63.2
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 8.7e-166 589.0 545 63.1
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 2.5e-165 587.4 1246 38.4
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 2.5e-165 587.4 545 63.1
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.6e-164 584.7 1247 41.5
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 6.3e-164 582.8 538 61.3
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 1.5e-162 578.2 1244 42.4
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 4.5e-162 576.6 1241 40.9
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.0e-161 575.5 1245 42.6
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 2.9e-161 573.9 1242 41.9
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 8.5e-161 572.4 1244 41.8
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 4.2e-160 570.1 1254 41.9
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 9.3e-160 568.9 1241 42.2
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 2.1e-159 567.8 1249 40.6
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 2.3e-158 564.3 1244 40.7
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 6.7e-158 562.8 1241 41.7
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 1.1e-157 562.0 1240 42.3
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.1e-155 555.4 1243 42.5
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 1.8e-155 554.7 542 61.4
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.8e-155 554.7 1241 40.2
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 3.4e-154 550.4 543 61.0
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 1.3e-153 548.5 1247 40.5
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 6.5e-153 546.2 543 60.6
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 4.2e-152 543.5 1176 41.6
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 7.2e-152 542.7 1250 39.8
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 1.2e-151 542.0 1245 42.0
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 1.1e-149 535.4 538 59.3
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 1.3e-148 531.9 1242 40.2
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 2.9e-145 520.8 544 59.4
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 5.5e-144 516.5 537 57.4
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 9.7e-141 505.8 1249 39.0
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 4.1e-139 500.4 1254 39.4
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 3.0e-134 484.2 541 54.5
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 8.3e-124 449.5 536 50.6
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 5.9e-122 443.4 543 49.0
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 6.5e-121 439.9 1206 38.1
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.1e-120 439.1 542 52.8
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 1.7e-116 425.2 541 49.5
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 9.2e-115 419.5 1034 40.2
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 9.2e-115 419.5 569 44.8
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 3.8e-113 414.1 542 48.0
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 5.0e-113 413.7 560 48.4
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 2.4e-107 394.8 432 51.9
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 2.5e-104 384.8 389 56.3
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 9.5e-104 382.9 556 46.6
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.6e-101 374.8 351 58.4
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 3.4e-101 374.4 571 42.6
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 2.1e-98 365.2 580 44.0
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 1.5e-93 349.0 380 52.9
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 7.3e-88 330.1 468 61.3
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.1e-86 326.2 433 47.1
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.4e-85 321.2 388 70.1
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 4.4e-85 320.9 449 62.6
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 9.2e-83 313.2 425 64.7
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.1e-74 285.4 337 51.3
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 3.7e-63 248.1 200 62.0
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 5.1e-49 201.1 660 28.8
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 3.3e-48 198.4 619 31.0
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 9.0e-46 190.3 314 39.5
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 2.9e-44 185.3 722 37.5
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.2e-43 180.6 220 48.6
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 8.8e-41 173.7 147 65.3
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 5.0e-36 157.9 229 45.4
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-35 154.8 229 43.7
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-34 153.3 155 55.5
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.1e-33 147.9 106 70.8
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.2e-31 140.6 83 78.3
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.1e-30 138.7 233 38.2
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.5e-29 135.2 77 84.4
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 1.0e-28 133.7 313 31.9
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-27 129.8 69 85.5
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.5e-27 127.9 100 69.0
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-24 120.2 188 44.7
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 5.7e-24 117.9 64 87.5
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 8.2e-23 114.0 62 85.5
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 1.2e-21 110.2 59 88.1
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.2e-21 110.2 146 45.9
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 2.2e-20 105.9 82 67.1
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 2.2e-20 105.9 119 57.1
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 2.9e-20 105.5 156 92.9
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 3.8e-20 105.1 150 45.3
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 1.5e-19 103.2 158 48.7
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.2e-19 102.1 60 80.0
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 8.0e-18 97.4 59 76.3
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 3.0e-17 95.5 135 48.1
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 1.5e-16 93.2 151 90.7
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 2.0e-16 92.8 105 54.3
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-13 83.6 170 36.5
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.4e-09 70.1 60 61.7
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 7.5e-08 64.3 146 38.4
Lsat_1_v5_gn_9_105500 Lactuca sativa HOM05D004098 ORTHO05D001482 2.8e-07 62.4 87 47.1
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 4.8e-07 61.6 59 52.5
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-06 60.1 92 39.1
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 1.4e-06 60.1 41 68.3
Gohir.A10G243600 Gossypium hirsutum HOM05D004098 ORTHO05D005454 7.0e-06 57.8 26 96.2


User provided reference genes

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