Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10033004m.g Citrus clementina HOM05D004585 ORTHO05D005640 1.1e-78 296.6 147 100.0
Thecc.10G109700 Theobroma cacao HOM05D004585 ORTHO05D005640 3.9e-65 251.5 145 84.1
Thecc.K0008500 Theobroma cacao HOM05D004585 ORTHO05D005640 3.9e-65 251.5 145 84.1
Atru.chr12.969 Acer truncatum HOM05D004585 ORTHO05D005640 6.7e-65 250.8 145 85.5
Atru.chr10.1244 Acer truncatum HOM05D004585 ORTHO05D005640 1.1e-64 250.0 146 87.7
THA.LOC104816458 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 1.9e-64 249.2 145 82.8
Gohir.A13G011400 Gossypium hirsutum HOM05D004585 ORTHO05D005640 8.2e-63 243.8 145 81.4
Gorai.013G013300 Gossypium raimondii HOM05D004585 ORTHO05D005640 8.2e-63 243.8 145 81.4
Duzib128G1105 Durio zibethinus HOM05D004585 ORTHO05D005640 1.4e-62 243.0 150 78.7
Cfa011225 Carpinus fangiana HOM05D004585 ORTHO05D005640 2.4e-62 242.3 145 79.3
Gohir.D13G012100 Gossypium hirsutum HOM05D004585 ORTHO05D005640 3.1e-62 241.9 145 80.7
COL.COLO4_27310 Corchorus olitorius HOM05D004585 ORTHO05D005640 4.1e-62 241.5 144 79.2
Manes.05G202500 Manihot esculenta HOM05D004585 ORTHO05D005640 5.3e-62 241.1 145 79.3
Ciclev10013752m.g Citrus clementina HOM05D004585 ORTHO05D005640 9.0e-62 240.4 144 86.1
Lalb_Chr22g0354511 Lupinus albus HOM05D004585 ORTHO05D005640 9.0e-62 240.4 145 77.9
THA.LOC104823192 Tarenaya hassleriana HOM05D004585 ORTHO05D005640 9.0e-62 240.4 143 81.1
Cfa013557 Carpinus fangiana HOM05D004585 ORTHO05D005640 1.2e-61 240.0 145 77.9
Haze_02611 Corylus avellana HOM05D004585 ORTHO05D005640 1.2e-61 240.0 145 78.6
Glyma.09G111400 Glycine max HOM05D004585 ORTHO05D005640 5.9e-61 237.7 145 75.2
Phvul.005G089300 Phaseolus vulgaris HOM05D004585 ORTHO05D005640 2.2e-60 235.7 145 74.5
Lalb_Chr14g0365991 Lupinus albus HOM05D004585 ORTHO05D005640 2.9e-60 235.3 145 77.2
CiPaw.01G204400 Carya illinoinensis HOM05D004585 ORTHO05D005640 3.8e-60 235.0 143 80.4
Glyma.02G173000 Glycine max HOM05D004585 ORTHO05D005640 5.0e-60 234.6 145 73.8
TWI38G0710 Tripterygium wilfordii HOM05D004585 ORTHO05D005640 1.4e-59 233.0 145 75.9
VMungo1080G1669 Vigna mungo HOM05D004585 ORTHO05D005640 1.4e-59 233.0 145 73.1
Eucgr.G02711 Eucalyptus grandis HOM05D004585 ORTHO05D005640 4.2e-59 231.5 145 73.8
Potri.010G234800 Populus trichocarpa HOM05D004585 ORTHO05D005640 7.2e-59 230.7 145 74.5
Thhalv10014607m.g Eutrema salsugineum HOM05D004585 ORTHO05D005640 9.4e-59 230.3 145 72.4
Hma1.2p1_0567F.1_g180100 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 9.4e-59 230.3 145 75.2
TPR.G4853 Trifolium pratense HOM05D004585 ORTHO05D005640 9.4e-59 230.3 145 73.1
GSVIVG01021851001 Vitis vinifera HOM05D004585 ORTHO05D005640 9.4e-59 230.3 145 76.6
arahy.Tifrunner.gnm1.ann1.48LUDE Arachis hypogaea HOM05D004585 ORTHO05D005640 1.6e-58 229.6 145 74.5
arahy.Tifrunner.gnm1.ann1.CB8VHN Arachis hypogaea HOM05D004585 ORTHO05D005640 1.6e-58 229.6 145 74.5
Medtr1g108290 Medicago truncatula HOM05D004585 ORTHO05D005640 1.6e-58 229.6 145 71.7
vmacro21510 Vaccinium macrocarpon HOM05D004585 ORTHO05D005640 1.6e-58 229.6 145 76.6
Psat6g221600 Pisum sativum HOM05D004585 ORTHO05D005640 2.1e-58 229.2 145 71.7
Dinv20840 Davidia involucrata HOM05D004585 ORTHO05D005640 3.6e-58 228.4 146 76.7
Sabra10G0182000 Salix brachista HOM05D004585 ORTHO05D005640 3.6e-58 228.4 145 73.1
Sed0007729 Sechium edule HOM05D004585 ORTHO05D005640 1.0e-57 226.9 145 72.4
CsaV3_6G004080 Cucumis sativus L. HOM05D004585 ORTHO05D005640 2.3e-57 225.7 145 72.4
Ca_04982_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.0e-57 225.3 145 71.7
Ca_11096_v3 Cicer arietinum L. HOM05D004585 ORTHO05D005640 3.0e-57 225.3 145 71.7
Actinidia18578 Actinidia chinensis HOM05D004585 ORTHO05D005640 3.9e-57 224.9 145 73.8
COL.COLO4_33895 Corchorus olitorius HOM05D004585 ORTHO05D005640 6.7e-57 224.2 131 82.4
Sopen11g026360 Solanum pennellii HOM05D004585 ORTHO05D005640 6.7e-57 224.2 145 73.8
BcaC03g12939 Brassica carinata HOM05D004585 ORTHO05D005640 8.8e-57 223.8 145 71.0
HanXRQChr10g0319081 Helianthus annuus HOM05D004585 ORTHO05D005640 8.8e-57 223.8 145 73.1
Peaxi162Scf00150g00411 Petunia axillaris HOM05D004585 ORTHO05D005640 8.8e-57 223.8 143 74.1
Rhsim03G0106100 Rhododendron simsii HOM05D004585 ORTHO05D005640 8.8e-57 223.8 145 74.5
Sp6g38180 Schrenkiella parvula HOM05D004585 ORTHO05D005640 8.8e-57 223.8 145 70.3
Sopen06g031130 Solanum pennellii HOM05D004585 ORTHO05D005640 8.8e-57 223.8 144 73.6
Aa31LG3G3420 Aethionema arabicum HOM05D004585 ORTHO05D005640 1.1e-56 223.4 145 70.3
Nitab4.5_0000442g0080 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.1e-56 223.4 143 74.8
PGR142G4346 Punica granatum HOM05D004585 ORTHO05D005640 1.1e-56 223.4 147 72.1
CARHR208690 Cardamine hirsuta HOM05D004585 ORTHO05D005640 1.5e-56 223.0 145 71.0
ClCG08G008100 Citrullus lanatus HOM05D004585 ORTHO05D005640 1.5e-56 223.0 145 71.0
PGSC0003DMG400000462 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.5e-56 223.0 143 74.8
C02p02000 Brassica napus HOM05D004585 ORTHO05D005640 1.9e-56 222.6 145 70.3
BraA02t04819Z Brassica rapa HOM05D004585 ORTHO05D005640 2.5e-56 222.2 145 70.3
Lj6g0005217 Lotus japonicus HOM05D004585 ORTHO05D005640 2.5e-56 222.2 145 69.7
HanXRQChr14g0456901 Helianthus annuus HOM05D004585 ORTHO05D005640 3.3e-56 221.9 145 71.7
AL6G14230 Arabidopsis lyrata HOM05D004585 ORTHO05D005640 4.3e-56 221.5 145 69.7
MELO3C019883.2 Cucumis melo HOM05D004585 ORTHO05D005640 4.3e-56 221.5 145 71.0
ECA238G4124 Erigeron canadensis HOM05D004585 ORTHO05D005640 4.3e-56 221.5 145 71.7
TAR633G1318 Trochodendron aralioides HOM05D004585 ORTHO05D005640 4.3e-56 221.5 145 71.0
BcaC06g32168 Brassica carinata HOM05D004585 ORTHO05D005640 7.4e-56 220.7 145 70.3
C09p72190 Brassica napus HOM05D004585 ORTHO05D005640 7.4e-56 220.7 145 70.3
BolC9t59963H Brassica oleracea HOM05D004585 ORTHO05D005640 7.4e-56 220.7 145 70.3
Cc02_g10240 Coffea canephora HOM05D004585 ORTHO05D005640 7.4e-56 220.7 144 75.0
Sed0016970 Sechium edule HOM05D004585 ORTHO05D005640 7.4e-56 220.7 145 71.0
TAR633G2635 Trochodendron aralioides HOM05D004585 ORTHO05D005640 7.4e-56 220.7 143 72.0
Actinidia06707 Actinidia chinensis HOM05D004585 ORTHO05D005640 9.7e-56 220.3 145 73.1
A10p31500 Brassica napus HOM05D004585 ORTHO05D005640 9.7e-56 220.3 145 70.3
BraA10t45196Z Brassica rapa HOM05D004585 ORTHO05D005640 9.7e-56 220.3 145 70.3
Carub.0006s0352 Capsella rubella HOM05D004585 ORTHO05D005640 1.7e-55 219.5 145 69.7
PGSC0003DMG400007128 Solanum tuberosum HOM05D004585 ORTHO05D005640 1.7e-55 219.5 144 72.9
AT5G04600 Arabidopsis thaliana HOM05D004585 ORTHO05D005640 2.2e-55 219.2 145 69.7
CSS0035600 Camellia sinensis var. sinensis HOM05D000239 ORTHO05D000484 2.2e-55 219.2 145 71.7
Prupe.1G580700 Prunus persica HOM05D004585 ORTHO05D005640 2.2e-55 219.2 143 76.2
Nn3g20167 Nelumbo nucifera HOM05D004585 ORTHO05D005640 2.8e-55 218.8 145 72.4
PSO675G5749 Papaver somniferum HOM05D004585 ORTHO05D005640 4.8e-55 218.0 145 72.4
PSO717G0039 Papaver somniferum HOM05D004585 ORTHO05D005640 4.8e-55 218.0 145 72.4
Sc09g0005570 Simmondsia chinensis HOM05D004585 ORTHO05D005640 3.1e-54 215.3 145 69.0
MD08G1243300 Malus domestica HOM05D004585 ORTHO05D005640 4.1e-54 214.9 143 73.4
CANSAT56G4487 Cannabis sativa HOM05D004585 ORTHO05D005640 5.3e-54 214.5 143 72.0
PSO173G0033 Papaver somniferum HOM05D004585 ORTHO05D005640 6.9e-54 214.2 145 71.0
SGA_v2.0_scaffold154G37190 Striga asiatica HOM05D004585 ORTHO05D005640 9.1e-54 213.8 144 70.1
Hma1.2p1_0026F.1_g016750 Hydrangea macrophylla HOM05D004585 ORTHO05D005640 1.2e-53 213.4 145 71.7
Oeu027977.1 Olea europaea HOM05D004585 ORTHO05D005640 1.2e-53 213.4 144 69.4
QL04p041242 Quercus lobata HOM05D004585 ORTHO05D005640 2.0e-53 212.6 142 73.2
PSO210G0756 Papaver somniferum HOM05D004585 ORTHO05D005640 2.6e-53 212.2 145 70.3
SGA_v2.0_scaffold10G05319 Striga asiatica HOM05D004585 ORTHO05D005640 3.4e-53 211.8 144 70.1
Hund06922 Selenicereus undatus HOM05D004585 ORTHO05D005640 5.9e-53 211.1 145 69.7
Hund13887 Selenicereus undatus HOM05D004585 ORTHO05D005640 1.0e-52 210.3 147 68.0
Lsat_1_v5_gn_2_86220 Lactuca sativa HOM05D004585 ORTHO05D005640 1.3e-52 209.9 145 67.6
Nitab4.5_0003470g0110 Nicotiana tabacum HOM05D004585 ORTHO05D005640 1.3e-52 209.9 131 76.3
CDE04G0123 Ceratophyllum demersum HOM05D004585 ORTHO05D005640 2.2e-52 209.1 145 67.6
Cpa.g.sc128.48 Carica papaya HOM05D004585 ORTHO05D005640 2.9e-52 208.8 130 76.2
RcHm_v2.0_Chr4g0433501 Rosa chinensis HOM05D004585 ORTHO05D005640 2.9e-52 208.8 142 73.2
MSTRG.412 Avicennia marina HOM05D004585 ORTHO05D005640 3.8e-52 208.4 144 68.8
SalBow6G2458 Salvia bowleyana HOM05D004585 ORTHO05D005640 3.8e-52 208.4 141 70.9
Os08g0412200 Oryza sativa ssp. japonica HOM05D004585 ORTHO05D005640 5.0e-52 208.0 145 64.1
Solyc06g074720.4 Solanum lycopersicum HOM05D004585 ORTHO05D005640 6.5e-52 207.6 131 76.3
SGA_v2.0_scaffold113G31721 Striga asiatica HOM05D004585 ORTHO05D005640 3.2e-51 205.3 144 67.4
Lj3A931T47 Lonicera japonica HOM05D004585 ORTHO05D005640 1.2e-50 203.4 130 77.7
ATR0068G115 Amborella trichopoda HOM05D004585 ORTHO05D005640 2.7e-50 202.2 145 62.1
Ah.16g102420 Amaranthus hybridus HOM05D004585 ORTHO05D005640 3.6e-50 201.8 146 67.1
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 4.7e-50 201.4 144 66.7
Ah.03g136890 Amaranthus hybridus HOM05D004585 ORTHO05D005640 6.1e-50 201.1 145 66.2
FAN26G1691 Fragaria x ananassa HOM05D004585 ORTHO05D005640 3.0e-49 198.7 144 68.8
FvH4_5g27351 Fragaria vesca HOM05D004585 ORTHO05D005640 3.9e-49 198.4 142 69.7
Dinv30656 Davidia involucrata HOM05D004585 ORTHO05D005640 8.8e-49 197.2 145 69.0
AUR62003699 Chenopodium quinoa HOM05D004585 ORTHO05D005640 1.5e-48 196.4 146 65.1
DCAR_012470 Daucus carota HOM05D004585 ORTHO05D005640 1.5e-48 196.4 143 66.4
Migut.F01706 Erythranthe guttata HOM05D004585 ORTHO05D005640 1.3e-47 193.4 149 63.8
EL10Ac2g03709 Beta vulgaris HOM05D004585 ORTHO05D005640 3.7e-47 191.8 146 63.7
HPP92_008213 Vanilla planifolia HOM05D004585 ORTHO05D005640 9.1e-46 187.2 143 62.9
Oeu046197.1 Olea europaea HOM05D004585 ORTHO05D005640 7.7e-45 184.1 142 61.3
EL10Ac4g08678 Beta vulgaris HOM05D004585 ORTHO05D005640 3.2e-43 178.7 131 66.4
CSS0012030 Camellia sinensis var. sinensis HOM05D004585 ORTHO05D005640 7.2e-43 177.6 146 62.3
Haze_22178 Corylus avellana HOM05D004585 ORTHO05D005640 7.2e-43 177.6 148 63.5
EL10Ac4g08675 Beta vulgaris HOM05D004585 ORTHO05D005640 2.1e-42 176.0 132 65.9
FAN13G1680 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.5e-40 169.9 123 68.3
FAN18G1621 Fragaria x ananassa HOM05D005925 ORTHO05D007270 1.5e-40 169.9 123 68.3
AUR62018007 Chenopodium quinoa HOM05D004585 ORTHO05D005640 2.6e-40 169.1 126 65.1
Medtr4g127330 Medicago truncatula HOM05D004585 ORTHO05D005640 6.3e-39 164.5 113 67.3
DCAR_001331 Daucus carota HOM05D004585 ORTHO05D005640 1.1e-38 163.7 143 58.7
AagrBONN_evm.TU.Sc2ySwM_228.827 Anthoceros agrestis HOM05D004585 ORTHO05D005640 7.0e-38 161.0 142 53.5
Zm00001eb178930 Zea mays HOM05D004585 ORTHO05D005640 1.2e-37 160.2 125 64.8
Pp3c8_3240 Physcomitrium patens HOM05D004585 ORTHO05D005640 2.5e-35 152.5 146 49.3
Aqoxy1G00240 Aquilegia oxysepala HOM05D004585 ORTHO05D005640 1.2e-34 150.2 107 65.4
Pp3c3_32540 Physcomitrium patens HOM05D004585 ORTHO05D005640 2.1e-34 149.4 145 49.0
Mapoly0059s0023 Marchantia polymorpha HOM05D004585 ORTHO05D005640 3.3e-32 142.1 145 48.3
BolC2t06157H Brassica oleracea HOM05D004585 ORTHO05D005640 1.7e-31 139.8 94 67.0
SMO117G0347 Selaginella moellendorffii HOM05D004585 ORTHO05D005640 1.9e-27 126.3 142 42.3
Cre08.g368500 Chlamydomonas reinhardtii HOM05D004585 ORTHO05D005640 2.5e-27 125.9 143 46.2
MCO05G308 Micromonas commoda HOM05D004585 ORTHO05D005640 6.1e-26 121.3 128 44.5
BcaC06g32170 Brassica carinata HOM05D004585 ORTHO05D005640 1.8e-25 119.8 75 73.3
TPR.G32073 Trifolium pratense HOM05D004585 ORTHO05D005640 1.2e-24 117.1 75 70.7
Lj9A82T44 Lonicera japonica HOM05D004585 ORTHO05D005640 3.4e-24 115.5 68 77.9
CBR_g11154 Chara braunii HOM05D004585 ORTHO05D005640 9.8e-24 114.0 145 41.4
TPR.G31410 Trifolium pratense HOM05D004585 ORTHO05D005640 2.8e-23 112.5 69 71.0
unitig_26.g9455 Utricularia gibba HOM05D004585 ORTHO05D005640 1.1e-22 110.5 95 56.8
PRCOL_00003387 Prasinoderma coloniale HOM05D004585 ORTHO05D005640 5.4e-22 108.2 126 42.1
Cfa021710 Carpinus fangiana HOM05D004585 ORTHO05D005640 9.5e-19 97.4 146 39.0
COL.COLO4_14104 Corchorus olitorius HOM05D004585 ORTHO05D005736 8.9e-17 90.9 50 82.0
MD15G1436900 Malus domestica HOM05D004585 ORTHO05D005640 8.9e-17 90.9 76 61.8
Lj6g0027575 Lotus japonicus HOM05D004585 ORTHO05D005640 2.0e-16 89.7 55 70.9
COL.COLO4_17533 Corchorus olitorius HOM05D001240 ORTHO05D002450 5.7e-16 88.2 48 81.2
BcaB01g05909 Brassica carinata HOM05D004585 ORTHO05D005640 7.5e-16 87.8 55 70.9
MD15G1437000 Malus domestica HOM05D004585 ORTHO05D005640 2.8e-15 85.9 49 79.6
EL10Ac7g17659 Beta vulgaris HOM05D004585 ORTHO05D005640 3.8e-12 75.5 47 70.2
Haze_26093 Corylus avellana HOM05D004585 ORTHO05D005640 8.6e-12 74.3 127 33.1
Oeu053518.1 Olea europaea HOM05D004585 ORTHO05D005640 5.6e-11 71.6 49 61.2
SalBow3G2087 Salvia bowleyana HOM05D004585 ORTHO05D005640 9.5e-11 70.9 42 78.6
EL10Ac2g02998 Beta vulgaris HOM05D000461 ORTHO05D005640 1.1e-06 57.4 51 54.9
vmacro07224 Vaccinium macrocarpon HOM05D004585 ORTHO05D037280 2.4e-06 56.2 44 61.4
PSO478G2622 Papaver somniferum HOM05D004585 ORTHO05D037280 5.4e-06 55.1 36 66.7


User provided reference genes

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