Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10031450m.g Citrus clementina HOM05D004762 ORTHO05D005972 5.8e-272 940.3 465 100.0
Potri.012G095500 Populus trichocarpa HOM05D004762 ORTHO05D005972 7.2e-222 773.9 461 79.4
CiPaw.01G300200 Carya illinoinensis HOM05D004762 ORTHO05D005972 1.6e-221 772.7 459 81.5
TAR636G3670 Trochodendron aralioides HOM05D004762 ORTHO05D005972 2.1e-221 772.3 460 80.2
QL06p052059 Quercus lobata HOM05D004762 ORTHO05D005972 2.7e-221 771.9 455 82.6
Manes.07G131500 Manihot esculenta HOM05D004762 ORTHO05D005972 1.4e-220 769.6 460 79.6
Rhsim03G0145100 Rhododendron simsii HOM05D004762 ORTHO05D005972 3.0e-220 768.5 461 80.0
CSS0039953 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 2.6e-219 765.4 460 80.7
CSS0044129 Camellia sinensis var. sinensis HOM05D004762 ORTHO05D005972 2.6e-219 765.4 460 80.7
Atru.BG.273.p Acer truncatum HOM05D004762 ORTHO05D005972 3.3e-219 765.0 424 86.1
Hma1.2p1_0145F.1_g065350 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 5.7e-219 764.2 457 79.9
Cfa001301 Carpinus fangiana HOM05D004762 ORTHO05D005972 9.7e-219 763.5 461 80.9
CANSAT56G2662 Cannabis sativa HOM05D004762 ORTHO05D005972 1.3e-218 763.1 459 80.0
Haze_17244 Corylus avellana HOM05D004762 ORTHO05D005972 4.8e-218 761.1 466 80.7
GSVIVG01032791001 Vitis vinifera HOM05D004762 ORTHO05D005972 5.3e-217 757.7 459 79.5
Sed0015827 Sechium edule HOM05D004762 ORTHO05D005972 3.5e-216 755.0 459 79.1
TWI09G1175 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 3.5e-216 755.0 455 79.6
Lalb_Chr04g0254441 Lupinus albus HOM05D004762 ORTHO05D005972 4.5e-216 754.6 447 79.9
Duzib106G1587 Durio zibethinus HOM05D004762 ORTHO05D005972 5.9e-216 754.2 458 78.2
Thecc.10G014000 Theobroma cacao HOM05D004762 ORTHO05D005972 5.9e-216 754.2 458 78.8
Gorai.013G017200 Gossypium raimondii HOM05D004762 ORTHO05D005972 2.9e-215 751.9 455 78.9
RcHm_v2.0_Chr1g0370541 Rosa chinensis HOM05D004762 ORTHO05D005972 2.9e-215 751.9 457 79.2
vmacro06958 Vaccinium macrocarpon HOM05D004762 ORTHO05D005972 2.9e-215 751.9 493 75.5
TWI53G2041 Tripterygium wilfordii HOM05D004762 ORTHO05D005972 5.0e-215 751.1 454 79.1
Eucgr.G03076 Eucalyptus grandis HOM05D004762 ORTHO05D005972 1.9e-214 749.2 455 77.8
COL.COLO4_23625 Corchorus olitorius HOM05D004762 ORTHO05D005972 2.5e-214 748.8 458 77.3
FvH4_7g24680 Fragaria vesca HOM05D004762 ORTHO05D005972 2.1e-213 745.7 459 78.0
Nn1g09364 Nelumbo nucifera HOM05D004762 ORTHO05D005972 3.6e-213 745.0 437 80.8
COL.COLO4_25767 Corchorus olitorius HOM05D004762 ORTHO05D005972 6.1e-213 744.2 454 77.8
Psat4g160680 Pisum sativum HOM05D004762 ORTHO05D005972 6.1e-213 744.2 465 76.6
CsaV3_5G010300 Cucumis sativus L. HOM05D004762 ORTHO05D005972 8.0e-213 743.8 460 78.7
Prupe.2G252400 Prunus persica HOM05D004762 ORTHO05D005972 1.8e-212 742.7 459 78.9
Gohir.D13G015700 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.3e-212 742.3 455 78.7
Lj3g0010190 Lotus japonicus HOM05D004762 ORTHO05D005972 1.1e-211 740.0 461 78.1
Phvul.010G113600 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 1.1e-211 740.0 460 77.8
Glyma.07G056300 Glycine max HOM05D004762 ORTHO05D005972 2.0e-211 739.2 460 77.6
arahy.Tifrunner.gnm1.ann1.BGVI4S Arachis hypogaea HOM05D004762 ORTHO05D005972 3.3e-211 738.4 462 77.5
Medtr8g027750 Medicago truncatula HOM05D004762 ORTHO05D005972 3.3e-211 738.4 453 78.4
FAN10G2322 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.4e-211 738.0 459 77.3
MD01G1154800 Malus domestica HOM05D004762 ORTHO05D005972 2.2e-210 735.7 460 76.7
arahy.Tifrunner.gnm1.ann1.YY9F0M Arachis hypogaea HOM05D004762 ORTHO05D005972 3.1e-209 731.9 481 74.6
FAN06G2944 Fragaria x ananassa HOM05D004762 ORTHO05D005972 7.0e-209 730.7 488 73.6
VMungo0331G1989 Vigna mungo HOM05D004762 ORTHO05D005972 2.0e-208 729.2 460 76.5
AT2G40190 Arabidopsis thaliana HOM05D004762 ORTHO05D005972 2.6e-208 728.8 458 77.1
Thhalv10016619m.g Eutrema salsugineum HOM05D004762 ORTHO05D005972 3.5e-208 728.4 452 77.2
ClCG07G004360 Citrullus lanatus HOM05D004762 ORTHO05D005972 4.5e-208 728.0 493 73.0
Migut.F00664 Erythranthe guttata HOM05D004762 ORTHO05D005972 4.5e-208 728.0 465 75.3
PSO017G1441 Papaver somniferum HOM05D004762 ORTHO05D005972 1.0e-207 726.9 457 74.4
MD07G1223900 Malus domestica HOM05D004762 ORTHO05D005972 1.3e-207 726.5 456 77.2
PSO675G7276 Papaver somniferum HOM05D004762 ORTHO05D005972 2.9e-207 725.3 457 74.6
Glyma.16G025200 Glycine max HOM05D004762 ORTHO05D005972 3.8e-207 724.9 460 76.7
Peaxi162Scf00284g00722 Petunia axillaris HOM05D004762 ORTHO05D005972 3.8e-207 724.9 463 74.3
SalBow6G6782 Salvia bowleyana HOM05D004762 ORTHO05D005972 3.8e-207 724.9 459 76.7
Sc10g0002460 Simmondsia chinensis HOM05D004762 ORTHO05D005972 6.5e-207 724.2 459 75.8
A05p06240 Brassica napus HOM05D004762 ORTHO05D005972 8.5e-207 723.8 459 75.6
Aa31LG5G19380 Aethionema arabicum HOM05D004762 ORTHO05D005972 1.1e-206 723.4 456 77.0
Sp4g22540 Schrenkiella parvula HOM05D004762 ORTHO05D005972 1.1e-206 723.4 452 76.1
Nitab4.5_0000797g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 3.2e-206 721.8 463 74.1
PGSC0003DMG400019183 Solanum tuberosum HOM05D004762 ORTHO05D005972 4.2e-206 721.5 467 73.2
arahy.Tifrunner.gnm1.ann1.NBD53L Arachis hypogaea HOM05D004762 ORTHO05D005972 5.5e-206 721.1 475 74.7
Ca_23540_v3 Cicer arietinum L. HOM05D004762 ORTHO05D005972 5.5e-206 721.1 483 73.3
Carub.0004s2241 Capsella rubella HOM05D004762 ORTHO05D005972 7.2e-206 720.7 459 74.9
PSO478G3676 Papaver somniferum HOM05D004762 ORTHO05D005972 7.2e-206 720.7 457 74.4
Aqoxy7G00585 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 9.4e-206 720.3 454 74.4
Nitab4.5_0013304g0010 Nicotiana tabacum HOM05D004762 ORTHO05D005972 9.4e-206 720.3 463 73.9
Solyc10g076800.2 Solanum lycopersicum HOM05D004762 ORTHO05D005972 9.4e-206 720.3 467 73.0
BraA05t19588Z Brassica rapa HOM05D004762 ORTHO05D005972 1.2e-205 719.9 459 75.2
AL108U10020 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 2.1e-205 719.2 452 75.7
CAN.G1087.1 Capsicum annuum HOM05D004762 ORTHO05D005972 2.7e-205 718.8 457 74.0
Cc08_g07190 Coffea canephora HOM05D004762 ORTHO05D005972 4.7e-205 718.0 464 74.4
Sabra15G0114600 Salix brachista HOM05D004762 ORTHO05D005972 1.8e-204 716.1 602 61.3
BcaB02g09041 Brassica carinata HOM05D004762 ORTHO05D005972 2.3e-204 715.7 437 77.6
BcaC02g12138 Brassica carinata HOM05D004762 ORTHO05D005972 3.0e-204 715.3 459 74.9
FAN01G2296 Fragaria x ananassa HOM05D004762 ORTHO05D005972 4.0e-204 714.9 505 70.3
C04p07190 Brassica napus HOM05D004762 ORTHO05D005972 6.8e-204 714.1 459 74.7
Lj8A64T49 Lonicera japonica HOM05D004762 ORTHO05D005972 8.8e-204 713.8 458 75.8
EL10Ac2g04854 Beta vulgaris HOM05D004762 ORTHO05D005972 1.5e-203 713.0 458 72.9
AUR62012271 Chenopodium quinoa HOM05D004762 ORTHO05D005972 5.7e-203 711.1 457 73.1
BolC4t22343H Brassica oleracea HOM05D004762 ORTHO05D005972 1.7e-202 709.5 460 74.6
Oeu043882.1 Olea europaea HOM05D004762 ORTHO05D005972 1.7e-202 709.5 499 70.9
Hma1.2p1_0523F.1_g172170 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 2.2e-202 709.1 457 75.5
Gohir.A13G014500 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.1e-201 706.8 454 75.3
HanXRQChr14g0459541 Helianthus annuus HOM05D004762 ORTHO05D005972 1.4e-201 706.4 464 74.1
Oeu011273.2 Olea europaea HOM05D004762 ORTHO05D005972 1.4e-201 706.4 534 66.3
CAN.G1305.22 Capsicum annuum HOM05D004762 ORTHO05D005972 2.4e-201 705.7 457 72.9
PGR142G3177 Punica granatum HOM05D004762 ORTHO05D005972 9.1e-201 703.7 457 74.0
PSO017G5956 Papaver somniferum HOM05D004762 ORTHO05D005972 1.6e-200 703.0 473 70.4
ECA238G4598 Erigeron canadensis HOM05D001399 ORTHO05D001670 2.2e-199 699.1 423 78.7
FAN03G0495 Fragaria x ananassa HOM05D004762 ORTHO05D005972 3.8e-199 698.4 477 71.9
AL4G37920 Arabidopsis lyrata HOM05D004762 ORTHO05D005972 3.2e-198 695.3 452 73.9
Lsat_1_v5_gn_2_124101 Lactuca sativa HOM05D004762 ORTHO05D005972 9.5e-190 667.2 449 72.2
ATR0580G181 Amborella trichopoda HOM05D004762 ORTHO05D005972 6.1e-189 664.5 462 69.9
CDE02G4330 Ceratophyllum demersum HOM05D004762 ORTHO05D005972 1.0e-188 663.7 457 69.1
Zm00001eb030250 Zea mays HOM05D004762 ORTHO05D005972 1.2e-187 660.2 452 70.4
HPP92_020134 Vanilla planifolia HOM05D004762 ORTHO05D005972 1.7e-186 656.4 423 73.0
DCAR_007786 Daucus carota HOM05D004762 ORTHO05D005972 4.9e-186 654.8 450 70.4
MELO3C018365.2 Cucumis melo HOM05D004762 ORTHO05D005972 1.3e-178 630.2 378 79.6
DCAR_024818 Daucus carota HOM05D004762 ORTHO05D005972 8.3e-178 627.5 459 64.5
Hma1.2p1_2705F.1_g327160 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.0e-175 619.0 362 81.5
AUR62022908 Chenopodium quinoa HOM05D004762 ORTHO05D005972 1.9e-174 616.3 379 76.5
TPR.G15355 Trifolium pratense HOM05D004762 ORTHO05D005972 1.5e-171 606.7 364 79.9
SGA_v2.0_scaffold44G16679 Striga asiatica HOM05D004762 ORTHO05D005972 1.3e-167 593.6 383 73.9
Actinidia33916 Actinidia chinensis HOM05D004762 ORTHO05D005972 1.9e-161 573.2 396 72.0
Mapoly0096s0017 Marchantia polymorpha HOM05D004762 ORTHO05D005972 4.3e-158 562.0 437 63.4
SGA_v2.0_scaffold60G20982 Striga asiatica HOM05D004762 ORTHO05D005972 3.2e-153 545.8 481 58.6
AagrBONN_evm.TU.Sc2ySwM_228.3247 Anthoceros agrestis HOM05D004762 ORTHO05D005972 6.0e-152 541.6 455 60.4
unitig_748.g8448 Utricularia gibba HOM05D004762 ORTHO05D005972 7.3e-150 534.6 449 58.8
Pp3c14_26870 Physcomitrium patens HOM05D004762 ORTHO05D005972 1.6e-149 533.5 455 58.5
SMO358G0322 Selaginella moellendorffii HOM05D004762 ORTHO05D005972 6.6e-143 511.5 449 60.1
CBR_g12682 Chara braunii HOM05D004762 ORTHO05D005972 1.5e-142 510.4 443 59.4
BcaC02g12136 Brassica carinata HOM05D004762 ORTHO05D005972 1.3e-138 497.3 369 68.0
Dinv21748 Davidia involucrata HOM05D004762 ORTHO05D005972 2.4e-137 493.0 278 82.4
Hund15913 Selenicereus undatus HOM05D004762 ORTHO05D005972 3.9e-127 459.1 455 53.8
CARHR135230 Cardamine hirsuta HOM05D004762 ORTHO05D005972 4.8e-125 452.2 277 75.5
Sopen10g028440 Solanum pennellii HOM05D004762 ORTHO05D005972 3.4e-123 446.0 284 72.2
PSO017G2836 Papaver somniferum HOM05D004762 ORTHO05D005972 4.3e-110 402.5 248 71.8
Os12g0583000 Oryza sativa ssp. japonica HOM05D004762 ORTHO05D005972 1.1e-105 387.9 253 74.3
MCO10G125 Micromonas commoda HOM05D004762 ORTHO05D005972 1.4e-103 380.9 531 42.9
Gohir.D06G056233 Gossypium hirsutum HOM05D004762 ORTHO05D005972 2.2e-101 373.6 250 75.6
PRCOL_00001728 Prasinoderma coloniale HOM05D004762 ORTHO05D005972 7.7e-99 365.2 441 46.7
Cre01.g058521 Chlamydomonas reinhardtii HOM05D004762 ORTHO05D005972 2.3e-95 353.6 534 41.2
Haze_26859 Corylus avellana HOM05D004762 ORTHO05D005972 2.1e-88 330.5 457 40.9
Gorai.004G138800 Gossypium raimondii HOM05D004762 ORTHO05D005972 1.2e-86 324.7 250 68.0
Gohir.D08G135600 Gossypium hirsutum HOM05D004762 ORTHO05D005972 1.5e-86 324.3 244 68.9
BraA04t18511Z Brassica rapa HOM05D004762 ORTHO05D001193 2.7e-75 287.0 235 63.4
Potri.015G093000 Populus trichocarpa HOM05D004762 ORTHO05D005972 1.2e-70 271.6 184 72.8
Cpa.g.sc1441.3 Carica papaya HOM05D004762 ORTHO05D005972 5.7e-70 269.2 159 76.1
BcaB01g03555 Brassica carinata HOM05D004762 ORTHO05D005972 2.2e-69 267.3 195 69.7
Aqoxy4G02490 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 1.4e-63 248.1 157 73.2
Aqoxy4G02491 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 3.2e-60 236.9 187 63.6
A04p29970 Brassica napus HOM05D004762 ORTHO05D001193 1.2e-59 235.0 235 55.7
TAR633G0702 Trochodendron aralioides HOM05D003030 ORTHO05D003610 2.7e-59 233.8 152 77.6
Nitab4.5_0006049g0030 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.1e-44 185.3 118 77.1
Phvul.010G113266 Phaseolus vulgaris HOM05D004762 ORTHO05D005972 8.6e-42 175.6 120 69.2
Aqoxy4G02489 Aquilegia oxysepala HOM05D004762 ORTHO05D005972 9.6e-41 172.2 106 79.2
QL11p009420 Quercus lobata HOM05D004762 ORTHO05D005972 1.6e-40 171.4 103 85.4
SEGI_20752 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 8.1e-40 169.1 115 71.3
EL10Ac2g03328 Beta vulgaris HOM05D004762 ORTHO05D005972 2.2e-37 161.0 107 74.8
BcaB06g29139 Brassica carinata HOM05D004762 ORTHO05D005972 3.8e-37 160.2 116 69.0
Hma1.2p1_0812F.1_g222370 Hydrangea macrophylla HOM05D004762 ORTHO05D005972 3.2e-36 157.1 339 32.7
EL10Ac6g13956 Beta vulgaris HOM05D004762 ORTHO05D005972 2.8e-32 144.1 91 75.8
TPR.G10834 Trifolium pratense HOM05D004762 ORTHO05D005972 3.1e-31 140.6 97 69.1
Nitab4.5_0001180g0090 Nicotiana tabacum HOM05D004762 ORTHO05D005972 1.5e-30 138.3 91 67.0
EL10Ac6g14685 Beta vulgaris HOM05D004762 ORTHO05D005972 5.3e-23 113.2 103 58.3
BcaC01g05421 Brassica carinata HOM05D002909 ORTHO05D000493 1.3e-21 108.6 71 78.9
C03p26800 Brassica napus HOM05D000223 ORTHO05D001193 1.3e-21 108.6 71 78.9
BolC3t15065H Brassica oleracea HOM05D000223 ORTHO05D001193 1.3e-21 108.6 71 78.9
arahy.Tifrunner.gnm1.ann1.38D1EG Arachis hypogaea HOM05D005637 ORTHO05D006983 4.6e-19 100.1 66 72.7
arahy.Tifrunner.gnm1.ann1.SGI312 Arachis hypogaea HOM05D004762 ORTHO05D005972 1.5e-17 95.1 68 69.1
SEGI_02041 Sequoiadendron giganteum HOM05D004762 ORTHO05D005972 1.9e-17 94.7 97 50.5
EL10Ac3g06411 Beta vulgaris HOM05D004762 ORTHO05D005972 1.2e-14 85.5 44 90.9
Nitab4.5_0004804g0050 Nicotiana tabacum HOM05D004762 ORTHO05D005972 2.5e-12 77.8 55 67.3
SMO200G0224 Selaginella moellendorffii HOM05D004141 ORTHO05D005416 7.1e-12 76.3 305 26.6
MD13G1267900 Malus domestica HOM05D004762 ORTHO05D005972 3.9e-10 70.5 42 76.2
Gorai.012G079400 Gossypium raimondii HOM05D004762 ORTHO05D046822 1.9e-09 68.2 146 38.4
Lsat_1_v5_gn_3_79340 Lactuca sativa HOM05D004762 ORTHO05D231769 2.5e-09 67.8 67 55.2
Gohir.D05G318650 Gossypium hirsutum HOM05D004762 ORTHO05D005972 4.3e-09 67.0 37 86.5
Sed0021837 Sechium edule HOM05D004762 ORTHO05D005972 4.3e-09 67.0 43 72.1
GSVIVG01022727001 Vitis vinifera HOM05D004762 ORTHO05D005972 4.3e-09 67.0 51 60.8
Gohir.D07G108366 Gossypium hirsutum HOM05D004762 ORTHO05D046822 1.3e-08 65.5 37 83.8
CDE06G2415 Ceratophyllum demersum HOM05D004141 ORTHO05D005416 2.1e-08 64.7 212 32.1
MD02G1220900 Malus domestica HOM05D004762 ORTHO05D005972 2.1e-08 64.7 41 68.3
arahy.Tifrunner.gnm1.ann1.9BEE5S Arachis hypogaea HOM05D004141 ORTHO05D005416 9.0e-07 59.3 213 29.6
Os04g0589600 Oryza sativa ssp. japonica HOM05D004141 ORTHO05D005416 9.0e-07 59.3 215 27.9
BraA03t11487Z Brassica rapa HOM05D000223 ORTHO05D001193 1.2e-06 58.9 65 53.8
MCO01G083 Micromonas commoda HOM05D004141 ORTHO05D005416 1.2e-06 58.9 421 25.7


User provided reference genes

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