Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 1.8e-299 1031.9 583 100.0
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 1.5e-200 703.4 591 68.5
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 2.5e-187 659.4 603 61.7
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 8.2e-183 644.4 603 63.2
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 1.4e-182 643.7 606 61.9
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 4.5e-181 638.6 605 61.5
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 2.4e-174 616.3 607 57.8
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 3.6e-170 602.4 619 58.5
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 9.8e-168 594.3 510 61.2
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 3.1e-166 589.3 588 60.5
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 4.0e-161 572.4 602 53.7
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 9.8e-160 567.8 644 53.6
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 6.4e-159 565.1 635 53.5
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.4e-158 563.9 555 56.8
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 3.9e-156 555.8 529 57.1
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 8.6e-148 528.1 563 54.0
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 1.6e-146 523.9 587 51.8
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 3.1e-145 519.6 533 53.7
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 4.0e-145 519.2 550 56.2
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 8.9e-145 518.1 595 54.6
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 9.8e-144 514.6 560 52.7
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 9.8e-144 514.6 620 53.5
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 8.3e-143 511.5 496 56.0
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 4.1e-142 509.2 617 54.0
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 4.1e-142 509.2 563 53.3
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 1.6e-141 507.3 658 48.6
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.6e-141 507.3 520 54.4
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 1.6e-141 507.3 520 54.4
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 4.6e-141 505.8 485 60.2
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 6.0e-141 505.4 549 52.3
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 1.0e-140 504.6 638 48.0
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 5.1e-140 502.3 614 50.2
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.1e-139 501.1 555 51.5
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 1.6e-138 497.3 598 51.2
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 3.6e-138 496.1 633 47.7
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 8.1e-138 495.0 545 55.4
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.4e-137 494.2 617 48.3
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 5.8e-136 488.8 588 48.8
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 7.6e-136 488.4 664 46.5
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 9.9e-136 488.0 600 47.7
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 2.9e-135 486.5 688 47.7
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 3.7e-135 486.1 592 48.5
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 6.4e-135 485.3 572 47.6
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 2.4e-134 483.4 722 44.6
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 1.6e-133 480.7 557 51.7
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 7.8e-133 478.4 565 49.6
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.9e-131 473.8 665 46.2
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 3.3e-131 473.0 582 49.0
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 4.3e-131 472.6 610 45.7
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 7.3e-131 471.9 764 40.8
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 9.6e-131 471.5 568 49.3
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 1.2e-130 471.1 554 48.4
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.6e-130 470.7 662 45.9
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 2.1e-130 470.3 701 43.4
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 2.8e-130 469.9 641 45.7
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 2.8e-130 469.9 665 45.9
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 1.1e-129 468.0 518 50.0
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 5.2e-129 465.7 511 49.5
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 6.8e-129 465.3 584 49.1
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 9.9e-128 461.5 527 49.3
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 9.9e-128 461.5 570 45.8
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 2.2e-127 460.3 585 46.7
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 2.9e-127 459.9 638 49.4
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 3.8e-127 459.5 543 48.3
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 3.8e-127 459.5 504 52.4
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.6e-125 454.1 560 47.0
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 1.0e-124 451.4 550 47.1
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.3e-124 451.1 570 46.3
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 5.6e-123 445.7 646 49.1
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 1.3e-122 444.5 527 47.8
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 3.6e-122 443.0 683 40.8
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.4e-121 441.0 651 44.4
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 2.4e-121 440.3 510 46.5
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 3.1e-121 439.9 775 38.8
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 5.3e-121 439.1 541 46.6
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 5.8e-120 435.6 630 43.7
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 3.8e-119 433.0 622 43.9
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 6.4e-119 432.2 621 44.0
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 9.3e-118 428.3 623 43.8
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 2.7e-117 426.8 463 54.4
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 3.5e-117 426.4 614 42.2
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 1.3e-116 424.5 689 40.6
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.3e-116 423.7 613 44.2
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 3.0e-116 423.3 687 39.4
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 1.3e-114 417.9 659 41.7
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 2.1e-114 417.2 740 39.2
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 1.2e-112 411.4 625 44.2
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 4.5e-112 409.5 430 57.0
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 1.3e-111 407.9 678 40.9
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 1.3e-111 407.9 836 34.2
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 1.7e-111 407.5 692 39.6
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-110 404.1 758 41.0
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 6.0e-109 399.1 642 44.1
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 3.9e-100 369.8 521 42.2
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 6.7e-100 369.0 686 40.4
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 4.5e-96 356.3 742 36.8
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 2.2e-95 354.0 510 43.3
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 3.2e-94 350.1 440 48.2
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 4.6e-93 346.3 435 48.3
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.7e-90 336.7 202 79.2
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.2e-88 331.6 228 70.2
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.0e-79 302.0 194 73.7
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.1e-78 298.5 278 55.4
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.2e-72 278.5 484 36.8
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 8.5e-71 272.3 477 37.1
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 4.7e-69 266.5 262 58.0
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.8e-66 257.3 487 34.9
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 8.2e-66 255.8 663 31.1
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.1e-65 255.4 703 28.9
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 7.7e-64 249.2 197 63.5
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 7.2e-62 242.7 527 32.3
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.6e-61 240.4 183 72.1
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 3.2e-54 217.2 183 63.4
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.4e-49 201.8 219 49.8
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 1.6e-45 188.3 236 49.2
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.7e-43 179.9 147 65.3
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 9.2e-41 172.6 195 44.1
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 1.7e-39 168.3 244 45.5
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 6.2e-29 133.3 173 43.4
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 4.0e-28 130.6 143 53.8
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 1.2e-27 129.0 108 61.1
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 1.5e-27 128.6 198 36.9
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.0e-27 128.3 241 34.4
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 4.4e-27 127.1 191 40.8
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 4.4e-27 127.1 191 40.8
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 5.4e-25 120.2 302 31.5
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 1.1e-20 105.9 126 44.4
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.5e-19 102.1 80 61.2
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 2.2e-18 98.2 142 38.7
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 8.4e-18 96.3 59 74.6
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.6e-16 92.0 134 41.8
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 4.7e-13 80.5 107 42.1
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 4.0e-12 77.4 49 67.3
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 6.9e-12 76.6 48 70.8
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.3e-10 72.4 116 35.3
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 6.4e-10 70.1 103 40.8
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 1.1e-09 69.3 115 36.5
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-09 68.6 76 43.4
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 3.2e-09 67.8 144 34.7
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 4.2e-09 67.4 151 32.5
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 1.6e-08 65.5 56 58.9
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 2.1e-08 65.1 137 34.3
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 7.8e-08 63.2 153 30.1
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 7.8e-08 63.2 81 34.6
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 3.9e-07 60.8 97 40.2
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 3.9e-07 60.8 158 31.6
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 1.9e-06 58.5 64 46.9
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 2.5e-06 58.2 169 29.0
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 5.6e-06 57.0 117 33.3
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 9.6e-06 56.2 96 38.5


User provided reference genes

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