Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10030375m.g Citrus clementina HOM05D004759 ORTHO05D005722 1.1e-125 453.4 232 100.0
Ciclev10028685m.g Citrus clementina HOM05D004759 ORTHO05D005722 2.1e-65 253.1 335 49.3
Potri.004G166900 Populus trichocarpa HOM05D004759 ORTHO05D005722 9.9e-55 217.6 327 42.8
Duzib132G0429 Durio zibethinus HOM05D004759 ORTHO05D005722 1.1e-53 214.2 331 42.6
Thecc.02G068600 Theobroma cacao HOM05D004759 ORTHO05D005722 1.9e-53 213.4 331 42.9
Atru.chr5.3204 Acer truncatum HOM05D004759 ORTHO05D005722 2.4e-53 213.0 332 42.8
QL11p047309 Quercus lobata HOM05D004759 ORTHO05D005722 3.2e-53 212.6 327 43.1
TWI79G0483 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 5.4e-53 211.8 326 43.3
COL.COLO4_17240 Corchorus olitorius HOM05D004759 ORTHO05D005722 9.3e-53 211.1 332 41.9
Cfa005166 Carpinus fangiana HOM05D004759 ORTHO05D005722 2.1e-52 209.9 328 42.4
CiPaw.06G125800 Carya illinoinensis HOM05D004759 ORTHO05D005722 2.1e-52 209.9 327 42.2
Gorai.005G251800 Gossypium raimondii HOM05D004759 ORTHO05D005722 2.1e-52 209.9 333 42.0
Potri.009G127800 Populus trichocarpa HOM05D004759 ORTHO05D005722 2.7e-52 209.5 328 41.2
Gohir.D02G224000 Gossypium hirsutum HOM05D004759 ORTHO05D005722 3.5e-52 209.1 333 41.7
Gohir.A03G202700 Gossypium hirsutum HOM05D004759 ORTHO05D005722 7.8e-52 208.0 333 41.7
FvH4_2g02210 Fragaria vesca HOM05D004759 ORTHO05D005722 1.0e-51 207.6 327 41.6
FAN15G1889 Fragaria x ananassa HOM05D004759 ORTHO05D005722 1.0e-51 207.6 327 41.6
Manes.04G079000 Manihot esculenta HOM05D004759 ORTHO05D005722 1.0e-51 207.6 331 41.1
Prupe.8G158800 Prunus persica HOM05D004759 ORTHO05D005722 1.0e-51 207.6 329 41.6
FAN24G2027 Fragaria x ananassa HOM05D004759 ORTHO05D005722 3.0e-51 206.1 327 41.3
FAN20G1238 Fragaria x ananassa HOM05D004759 ORTHO05D005722 5.1e-51 205.3 327 41.3
Duzib248G0603 Durio zibethinus HOM05D004759 ORTHO05D005722 1.5e-50 203.8 331 40.8
Sabra04G0112000 Salix brachista HOM05D004759 ORTHO05D005722 1.9e-50 203.4 327 40.1
Haze_02210 Corylus avellana HOM05D004759 ORTHO05D005722 2.5e-50 203.0 286 45.8
Eucgr.I01368 Eucalyptus grandis HOM05D004759 ORTHO05D005722 2.5e-50 203.0 328 40.9
RcHm_v2.0_Chr6g0245891 Rosa chinensis HOM05D004759 ORTHO05D005722 3.3e-50 202.6 327 41.3
FAN27G2697 Fragaria x ananassa HOM05D004759 ORTHO05D005722 4.3e-50 202.2 327 41.3
arahy.Tifrunner.gnm1.ann1.B05S7J Arachis hypogaea HOM05D004759 ORTHO05D005722 9.6e-50 201.1 330 39.4
Sabra09G0098000 Salix brachista HOM05D004759 ORTHO05D005722 1.6e-49 200.3 329 39.8
CiPaw.05G076100 Carya illinoinensis HOM05D004759 ORTHO05D005722 2.8e-49 199.5 331 40.5
CANSAT25G1906 Cannabis sativa HOM05D004759 ORTHO05D005722 3.6e-49 199.1 330 39.1
arahy.Tifrunner.gnm1.ann1.8G8R7R Arachis hypogaea HOM05D004759 ORTHO05D005722 4.8e-49 198.7 330 39.4
Glyma.11G097500 Glycine max HOM05D004759 ORTHO05D005722 6.2e-49 198.4 327 39.1
Solyc01g111040.4 Solanum lycopersicum HOM05D004759 ORTHO05D005722 6.2e-49 198.4 289 43.3
Sopen01g053100 Solanum pennellii HOM05D004759 ORTHO05D005722 6.2e-49 198.4 289 43.3
PGSC0003DMG400001638 Solanum tuberosum HOM05D004759 ORTHO05D005722 1.1e-48 197.6 289 43.3
CAN.G588.16 Capsicum annuum HOM05D004759 ORTHO05D005722 1.4e-48 197.2 289 42.6
Peaxi162Scf00362g01041 Petunia axillaris HOM05D004759 ORTHO05D005722 2.4e-48 196.4 329 38.9
Lj1g0004015 Lotus japonicus HOM05D004759 ORTHO05D005722 5.3e-48 195.3 330 38.2
Phvul.011G025600 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 5.3e-48 195.3 327 38.8
Lj5A186G40 Lonicera japonica HOM05D004759 ORTHO05D005722 9.0e-48 194.5 327 39.1
VMungo1127G1183 Vigna mungo HOM05D004759 ORTHO05D005722 9.0e-48 194.5 328 38.4
Ca_18993_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 1.2e-47 194.1 327 39.1
Lalb_Chr19g0139561 Lupinus albus HOM05D004759 ORTHO05D005722 2.6e-47 193.0 328 39.0
MD05G1114400 Malus domestica HOM05D004759 ORTHO05D005722 5.8e-47 191.8 335 39.4
TPR.G17153 Trifolium pratense HOM05D004759 ORTHO05D005722 5.8e-47 191.8 327 37.6
Ca_15318_v3 Cicer arietinum L. HOM05D004759 ORTHO05D005722 7.6e-47 191.4 335 37.9
SGA_v2.0_scaffold32G13244 Striga asiatica HOM05D004759 ORTHO05D005722 7.6e-47 191.4 299 41.1
Glyma.06G005900 Glycine max HOM05D004759 ORTHO05D005722 1.3e-46 190.7 326 37.4
TAR376G0227 Trochodendron aralioides HOM05D004759 ORTHO05D005722 1.3e-46 190.7 326 38.0
Nitab4.5_0000283g0200 Nicotiana tabacum HOM05D004759 ORTHO05D005722 1.7e-46 190.3 286 42.3
Rhsim11G0187000 Rhododendron simsii HOM05D004759 ORTHO05D005722 1.7e-46 190.3 330 37.9
Medtr3g117680 Medicago truncatula HOM05D004759 ORTHO05D005722 4.9e-46 188.7 326 37.7
Medtr4g075610 Medicago truncatula HOM05D004759 ORTHO05D005722 4.9e-46 188.7 327 37.0
Psat7g178120 Pisum sativum HOM05D004759 ORTHO05D005722 6.4e-46 188.3 326 37.4
vmacro22691 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 1.1e-45 187.6 331 37.5
PGR042G1303 Punica granatum HOM05D004759 ORTHO05D005722 1.4e-45 187.2 333 36.3
GSVIVG01024116001 Vitis vinifera HOM05D004759 ORTHO05D005722 1.4e-45 187.2 319 39.5
Hma1.2p1_0032F.1_g019720 Hydrangea macrophylla HOM05D004759 ORTHO05D005722 2.4e-45 186.4 331 37.8
MD10G1116400 Malus domestica HOM05D004759 ORTHO05D005722 2.4e-45 186.4 328 38.1
Glyma.04G006200 Glycine max HOM05D004759 ORTHO05D005722 3.2e-45 186.0 327 37.0
TWI31G1308 Tripterygium wilfordii HOM05D004759 ORTHO05D005722 4.2e-45 185.7 327 39.8
Psat5g003440 Pisum sativum HOM05D004759 ORTHO05D005722 7.1e-45 184.9 331 36.3
C07p63570 Brassica napus HOM05D004759 ORTHO05D005722 1.2e-44 184.1 334 36.5
BolC7t46770H Brassica oleracea HOM05D004759 ORTHO05D005722 1.2e-44 184.1 334 36.5
Phvul.009G000900 Phaseolus vulgaris HOM05D004759 ORTHO05D005722 1.6e-44 183.7 296 38.9
BraA06t27758Z Brassica rapa HOM05D004759 ORTHO05D005722 2.1e-44 183.3 335 36.4
Sc18g0006740 Simmondsia chinensis HOM05D004759 ORTHO05D005722 2.1e-44 183.3 328 37.5
CARHR247920 Cardamine hirsuta HOM05D004759 ORTHO05D005722 6.0e-44 181.8 334 36.5
A06p48900 Brassica napus HOM05D004759 ORTHO05D005722 1.0e-43 181.0 335 36.1
TPR.G38567 Trifolium pratense HOM05D004759 ORTHO05D005722 1.0e-43 181.0 330 36.7
ECA233G0594 Erigeron canadensis HOM05D004759 ORTHO05D005722 1.3e-43 180.6 326 37.4
PSO700G0005 Papaver somniferum HOM05D004759 ORTHO05D005722 1.3e-43 180.6 331 37.5
AL7G10680 Arabidopsis lyrata HOM05D004759 ORTHO05D005722 1.8e-43 180.3 334 35.9
THA.LOC104824783 Tarenaya hassleriana HOM05D004759 ORTHO05D005722 1.8e-43 180.3 330 37.3
AT4G38810 Arabidopsis thaliana HOM05D004759 ORTHO05D005722 3.0e-43 179.5 334 35.9
PSO170G3415 Papaver somniferum HOM05D004759 ORTHO05D005722 3.0e-43 179.5 331 37.2
VMungo1309G1106 Vigna mungo HOM05D004759 ORTHO05D005722 3.0e-43 179.5 298 37.9
Cc02_g16670 Coffea canephora HOM05D004759 ORTHO05D005722 8.7e-43 177.9 318 37.1
Sp7g37010 Schrenkiella parvula HOM05D004759 ORTHO05D005722 8.7e-43 177.9 295 39.3
Thhalv10025463m.g Eutrema salsugineum HOM05D004759 ORTHO05D005722 1.5e-42 177.2 337 35.9
HanXRQChr17g0555191 Helianthus annuus HOM05D004759 ORTHO05D005722 1.3e-41 174.1 326 36.2
Aa31LG6G16400 Aethionema arabicum HOM05D004759 ORTHO05D005722 2.1e-41 173.3 306 37.6
Lsat_1_v5_gn_8_126780 Lactuca sativa HOM05D004759 ORTHO05D005722 6.2e-41 171.8 326 34.7
EL10Ac9g21461 Beta vulgaris HOM05D004759 ORTHO05D005722 1.4e-40 170.6 329 34.3
MSTRG.16864 Avicennia marina HOM05D004759 ORTHO05D005722 1.8e-40 170.2 285 38.6
ClCG02G004370 Citrullus lanatus HOM05D004759 ORTHO05D005722 3.1e-40 169.5 328 35.4
Sed0015502 Sechium edule HOM05D004759 ORTHO05D005722 4.0e-40 169.1 330 35.2
MBI05_g15352_MAGBIO Magnolia biondii HOM05D004759 ORTHO05D005722 1.5e-39 167.2 315 36.8
AUR62010113 Chenopodium quinoa HOM05D004759 ORTHO05D005722 7.6e-39 164.9 330 33.0
MSTRG.5434 Avicennia marina HOM05D004759 ORTHO05D005722 1.7e-38 163.7 326 36.2
AUR62013108 Chenopodium quinoa HOM05D004759 ORTHO05D005722 2.2e-38 163.3 330 33.0
MELO3C013383.2 Cucumis melo HOM05D004759 ORTHO05D005722 1.1e-37 161.0 340 33.5
Nn5g30165 Nelumbo nucifera HOM05D004759 ORTHO05D005722 1.4e-37 160.6 290 38.3
CsaV3_7G000740 Cucumis sativus L. HOM05D004759 ORTHO05D005722 1.9e-37 160.2 328 33.8
Glyma.12G023500 Glycine max HOM05D004759 ORTHO05D005722 1.6e-36 157.1 219 43.8
Dinv41981 Davidia involucrata HOM05D004759 ORTHO05D005722 4.6e-36 155.6 250 41.2
TAR628G0309 Trochodendron aralioides HOM05D004759 ORTHO05D005722 4.6e-36 155.6 323 35.0
SalBow6G6339 Salvia bowleyana HOM05D004759 ORTHO05D005722 7.9e-36 154.8 352 33.0
MSTRG.27666 Avicennia marina HOM05D004759 ORTHO05D005722 2.3e-35 153.3 326 33.1
Nitab4.5_0000980g0350 Nicotiana tabacum HOM05D004759 ORTHO05D005722 9.6e-34 147.9 252 38.9
ATR0481G015 Amborella trichopoda HOM05D004759 ORTHO05D005722 2.1e-33 146.7 302 33.4
Ah.01g009490 Amaranthus hybridus HOM05D004759 ORTHO05D005722 2.8e-33 146.4 333 31.8
CDE02G2774 Ceratophyllum demersum HOM05D004759 ORTHO05D005722 2.4e-32 143.3 328 32.6
unitig_899.g15603 Utricularia gibba HOM05D004759 ORTHO05D005722 2.4e-32 143.3 328 31.1
Manes.11G078000 Manihot esculenta HOM05D004759 ORTHO05D005722 2.0e-31 140.2 217 40.6
Zm00001eb224230 Zea mays HOM05D004759 ORTHO05D005722 2.6e-31 139.8 311 32.5
Nn1g05877 Nelumbo nucifera HOM05D004759 ORTHO05D005722 3.4e-31 139.4 253 37.5
Duzib052G1250 Durio zibethinus HOM05D004759 ORTHO05D005722 7.6e-31 138.3 134 57.5
Hund06394 Selenicereus undatus HOM05D004759 ORTHO05D005722 2.2e-30 136.7 333 30.9
BcaNung01966 Brassica carinata HOM05D004759 ORTHO05D005722 1.4e-29 134.0 311 32.2
Gohir.A12G040100 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.9e-29 133.7 141 53.9
arahy.Tifrunner.gnm1.ann1.T5CB16 Arachis hypogaea HOM05D004759 ORTHO05D005722 1.2e-28 131.0 134 50.7
Gohir.D12G032200 Gossypium hirsutum HOM05D004759 ORTHO05D005722 1.6e-28 130.6 141 53.9
Gorai.008G032900 Gossypium raimondii HOM05D004759 ORTHO05D005722 2.1e-28 130.2 141 53.9
Os10g0177200 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 2.7e-28 129.8 298 31.9
Actinidia20479 Actinidia chinensis HOM05D004759 ORTHO05D005722 1.3e-27 127.5 137 50.4
Actinidia00585 Actinidia chinensis HOM05D004759 ORTHO05D005722 2.3e-27 126.7 142 48.6
vmacro02239 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 3.9e-27 125.9 80 75.0
vmacro02240 Vaccinium macrocarpon HOM05D004759 ORTHO05D005722 8.7e-27 124.8 141 48.2
SEGI_06358 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 1.5e-26 124.0 331 29.0
SHI05655 Sapria himalayana HOM05D004759 ORTHO05D005722 1.9e-26 123.6 315 31.7
Actinidia00584 Actinidia chinensis HOM05D004759 ORTHO05D005722 7.4e-26 121.7 74 82.4
SEGI_27774 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 7.4e-26 121.7 331 28.1
Carub.0007s0066 Capsella rubella HOM05D004759 ORTHO05D005722 1.3e-25 120.9 134 47.0
arahy.Tifrunner.gnm1.ann1.R4GM9V Arachis hypogaea HOM05D004759 ORTHO05D005722 6.3e-25 118.6 106 54.7
Cpa.g.sc37.205 Carica papaya HOM05D004759 ORTHO05D005722 6.3e-25 118.6 69 82.6
Sed0015287 Sechium edule HOM05D004759 ORTHO05D005722 8.2e-25 118.2 138 44.9
Migut.B00161 Erythranthe guttata HOM05D004759 ORTHO05D005722 2.4e-24 116.7 122 53.3
Sed0012827 Sechium edule HOM05D000600 ORTHO05D000432 9.0e-24 114.8 219 35.2
HPP92_003524 Vanilla planifolia HOM05D004759 ORTHO05D005722 3.4e-23 112.8 133 45.9
Oeu055645.1 Olea europaea HOM05D004759 ORTHO05D005722 5.9e-23 112.1 97 56.7
HPP92_003533 Vanilla planifolia HOM05D004759 ORTHO05D005722 2.9e-22 109.8 175 40.0
Oeu002958.2 Olea europaea HOM05D004759 ORTHO05D005722 2.5e-21 106.7 125 47.2
Hund00052 Selenicereus undatus HOM05D004759 ORTHO05D005722 2.5e-21 106.7 235 31.1
DCAR_026360 Daucus carota HOM05D004759 ORTHO05D005722 1.2e-20 104.4 89 64.0
Aqoxy5G01775 Aquilegia oxysepala HOM05D004759 ORTHO05D005722 2.1e-20 103.6 218 36.2
unitig_21.g20808 Utricularia gibba HOM05D004759 ORTHO05D005722 3.6e-20 102.8 176 38.1
arahy.Tifrunner.gnm1.ann1.ZR7FTB Arachis hypogaea HOM05D004759 ORTHO05D005722 6.1e-20 102.1 120 46.7
Cc02_g16650 Coffea canephora HOM05D004759 ORTHO05D005722 1.1e-18 97.8 133 43.6
Zm00001eb010730 Zea mays HOM05D004759 ORTHO05D005722 1.3e-17 94.4 278 28.4
Pp3c5_21520 Physcomitrium patens HOM05D004759 ORTHO05D005722 1.7e-17 94.0 285 24.6
Os03g0250000 Oryza sativa ssp. japonica HOM05D004759 ORTHO05D005722 1.3e-14 84.3 106 44.3
SMO169G0202 Selaginella moellendorffii HOM05D004759 ORTHO05D005722 1.9e-13 80.5 181 33.7
Mapoly0103s0051 Marchantia polymorpha HOM05D004759 ORTHO05D005722 4.2e-13 79.3 251 28.7
HPP92_007135 Vanilla planifolia HOM05D004759 ORTHO05D005722 5.5e-13 79.0 98 43.9
Mapoly0083s0056 Marchantia polymorpha HOM05D006821 ORTHO05D008740 1.6e-12 77.4 169 29.0
Pp3c20_9750 Physcomitrium patens HOM05D006821 ORTHO05D008740 2.6e-10 70.1 171 23.4
CBR_g10979 Chara braunii HOM05D006821 ORTHO05D008740 5.7e-10 68.9 171 24.6
Ah.13g066420 Amaranthus hybridus HOM05D004759 ORTHO05D005722 2.8e-09 66.6 46 69.6
THA.LOC104821676 Tarenaya hassleriana HOM05D006821 ORTHO05D008740 1.1e-08 64.7 169 22.5
arahy.Tifrunner.gnm1.ann1.7SV4PL Arachis hypogaea HOM05D006821 ORTHO05D008740 1.4e-08 64.3 198 24.7
VMungo0540G1649 Vigna mungo HOM05D006821 ORTHO05D008740 4.1e-08 62.8 169 26.0
Phvul.006G101500 Phaseolus vulgaris HOM05D006821 ORTHO05D008740 5.3e-08 62.4 169 25.4
SEGI_00561 Sequoiadendron giganteum HOM05D006821 ORTHO05D008740 5.3e-08 62.4 173 24.3
Hund22116 Selenicereus undatus HOM05D006821 ORTHO05D008740 1.2e-07 61.2 165 26.7
Lj1g0025723 Lotus japonicus HOM05D006821 ORTHO05D008740 2.0e-07 60.5 166 28.3
AUR62001014 Chenopodium quinoa HOM05D006821 ORTHO05D008740 3.4e-07 59.7 128 28.1
PGR004G1103 Punica granatum HOM05D006821 ORTHO05D008740 3.4e-07 59.7 165 24.8
PSO541G2336 Papaver somniferum HOM05D004759 ORTHO05D005722 5.9e-07 58.9 134 32.8
SEGI_21972 Sequoiadendron giganteum HOM05D004759 ORTHO05D005722 5.9e-07 58.9 121 26.4
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 7.7e-07 58.5 188 22.3
AT5G28830 Arabidopsis thaliana HOM05D006821 ORTHO05D008740 1.0e-06 58.2 170 24.1
Glyma.19G244500 Glycine max HOM05D006821 ORTHO05D008740 1.0e-06 58.2 166 25.9
Lalb_Chr04g0262251 Lupinus albus HOM05D006821 ORTHO05D008740 1.0e-06 58.2 169 26.0
ATR0606G003 Amborella trichopoda HOM05D006821 ORTHO05D008740 1.3e-06 57.8 173 22.5
GSVIVG01021794001 Vitis vinifera HOM05D006821 ORTHO05D008740 1.7e-06 57.4 157 25.5
BcaC04g23721 Brassica carinata HOM05D006821 ORTHO05D008740 3.8e-06 56.2 145 22.8
C09p05380 Brassica napus HOM05D006821 ORTHO05D008740 3.8e-06 56.2 145 22.8
MD04G1224000 Malus domestica HOM05D006821 ORTHO05D008740 3.8e-06 56.2 165 24.2
PSO675G1610 Papaver somniferum HOM05D004759 ORTHO05D005722 3.8e-06 56.2 138 33.3
AUR62004944 Chenopodium quinoa HOM05D006821 ORTHO05D008740 5.0e-06 55.8 127 26.8
Eucgr.H04340 Eucalyptus grandis HOM05D006821 ORTHO05D008740 5.0e-06 55.8 168 24.4
SMO259G0008 Selaginella moellendorffii HOM05D006821 ORTHO05D008740 5.0e-06 55.8 70 40.0
BolC9t53466H Brassica oleracea HOM05D006821 ORTHO05D008740 8.5e-06 55.1 145 22.1


User provided reference genes

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