Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029882m.g Citrus clementina HOM05D000395 ORTHO05D000088 1.7e-79 299.3 148 100.0
Ciclev10032216m.g Citrus clementina HOM05D000395 ORTHO05D000088 8.6e-28 127.5 154 43.5
Ciclev10030217m.g Citrus clementina HOM05D000395 ORTHO05D000088 5.6e-27 124.8 147 46.9
Atru.chr5.2850 Acer truncatum HOM05D000395 ORTHO05D000088 1.4e-22 110.2 145 39.3
Atru.chr5.2849 Acer truncatum HOM05D000395 ORTHO05D000088 2.4e-22 109.4 145 37.9
Ciclev10028858m.g Citrus clementina HOM05D000395 ORTHO05D000088 9.2e-22 107.5 147 38.1
Ciclev10029114m.g Citrus clementina HOM05D000395 ORTHO05D000088 1.6e-21 106.7 135 45.2
Atru.chr5.2865 Acer truncatum HOM05D000395 ORTHO05D000088 9.5e-19 97.4 144 41.7
Atru.chr5.2805 Acer truncatum HOM05D000395 ORTHO05D000088 5.2e-17 91.7 132 34.1
Atru.chr12.1248 Acer truncatum HOM05D000395 ORTHO05D000088 2.0e-16 89.7 132 34.1
Atru.chr1.3796 Acer truncatum HOM05D000395 ORTHO05D000088 9.9e-16 87.4 135 34.8
Ciclev10028901m.g Citrus clementina HOM05D000395 ORTHO05D000088 2.9e-15 85.9 146 32.2
Atru.chr5.2853 Acer truncatum HOM05D000395 ORTHO05D000088 6.4e-15 84.7 115 40.0
Atru.chr5.2871 Acer truncatum HOM05D000395 ORTHO05D000088 1.1e-14 84.0 142 30.3
Atru.chr5.2852 Acer truncatum HOM05D000395 ORTHO05D000088 1.4e-14 83.6 144 34.0
Ciclev10028745m.g Citrus clementina HOM05D000395 ORTHO05D000088 1.4e-14 83.6 142 32.4
Ciclev10029988m.g Citrus clementina HOM05D000395 ORTHO05D000088 1.6e-13 80.1 142 31.7
Atru.chr5.2870 Acer truncatum HOM05D000395 ORTHO05D000088 2.1e-13 79.7 147 39.5
Ciclev10030264m.g Citrus clementina HOM05D000395 ORTHO05D000088 4.6e-13 78.6 149 30.9
Potri.010G191500 Populus trichocarpa HOM05D000395 ORTHO05D000088 1.9e-11 73.2 113 32.7
Manes.17G096300 Manihot esculenta HOM05D000395 ORTHO05D000088 4.3e-11 72.0 153 32.7
Thecc.02G092400 Theobroma cacao HOM05D000395 ORTHO05D000088 3.6e-10 68.9 114 30.7
Potri.004G147200 Populus trichocarpa HOM05D000395 ORTHO05D000088 4.7e-10 68.6 112 33.9
Gohir.A04G121900 Gossypium hirsutum HOM05D000395 ORTHO05D000088 8.1e-10 67.8 138 32.6
Cfa015903 Carpinus fangiana HOM05D000395 ORTHO05D000088 1.1e-09 67.4 124 33.9
Gohir.D04G163000 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.1e-09 67.4 138 32.6
Gorai.012G150900 Gossypium raimondii HOM05D000395 ORTHO05D000088 1.1e-09 67.4 138 32.6
QL09p026061 Quercus lobata HOM05D000395 ORTHO05D000088 1.4e-09 67.0 110 31.8
vmacro16013 Vaccinium macrocarpon HOM05D000395 ORTHO05D000088 1.8e-09 66.6 111 32.4
Cfa015902 Carpinus fangiana HOM05D000395 ORTHO05D000088 2.4e-09 66.2 113 31.9
BcaB04g19015 Brassica carinata HOM05D000395 ORTHO05D000088 4.0e-09 65.5 118 31.4
A08p03910 Brassica napus HOM05D000395 ORTHO05D000088 4.0e-09 65.5 116 31.9
BraA08t32420Z Brassica rapa HOM05D000395 ORTHO05D000088 4.0e-09 65.5 116 31.9
Cfa015905 Carpinus fangiana HOM05D005492 ORTHO05D000088 4.0e-09 65.5 148 31.1
GSVIVG01031852001 Vitis vinifera HOM05D000395 ORTHO05D000088 5.2e-09 65.1 120 29.2
Aa31LG8G5820 Aethionema arabicum HOM05D000395 ORTHO05D010095 6.8e-09 64.7 118 31.4
BcaB04g20729 Brassica carinata HOM05D000395 ORTHO05D000088 6.8e-09 64.7 118 30.5
A01p35490 Brassica napus HOM05D000395 ORTHO05D000088 6.8e-09 64.7 118 30.5
BolC1t04471H Brassica oleracea HOM05D000395 ORTHO05D000088 6.8e-09 64.7 118 30.5
BraA01t03630Z Brassica rapa HOM05D000395 ORTHO05D000088 6.8e-09 64.7 118 30.5
THA.LOC104798805 Tarenaya hassleriana HOM05D000395 ORTHO05D000088 6.8e-09 64.7 118 32.2
THA.LOC104803466 Tarenaya hassleriana HOM05D000395 ORTHO05D000088 6.8e-09 64.7 118 31.4
TWI79G1437 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 6.8e-09 64.7 120 29.2
AL1G56820 Arabidopsis lyrata HOM05D000395 ORTHO05D000088 8.9e-09 64.3 118 30.5
AL3G32370 Arabidopsis lyrata HOM05D000395 ORTHO05D000088 8.9e-09 64.3 118 30.5
AT3G18990 Arabidopsis thaliana HOM05D000395 ORTHO05D000088 8.9e-09 64.3 118 30.5
Carub.0001s3867 Capsella rubella HOM05D000395 ORTHO05D000088 8.9e-09 64.3 118 30.5
Carub.0003s1880 Capsella rubella HOM05D000395 ORTHO05D000088 8.9e-09 64.3 118 30.5
CARHR094410 Cardamine hirsuta HOM05D000395 ORTHO05D000088 8.9e-09 64.3 118 30.5
Thhalv10021075m.g Eutrema salsugineum HOM05D000395 ORTHO05D000088 8.9e-09 64.3 118 30.5
Sp3g17090 Schrenkiella parvula HOM05D000395 ORTHO05D000088 8.9e-09 64.3 118 30.5
BcaC05g27493 Brassica carinata HOM05D000395 ORTHO05D000088 1.2e-08 63.9 118 29.7
A05p20620 Brassica napus HOM05D000395 ORTHO05D000088 1.2e-08 63.9 118 29.7
C05p34610 Brassica napus HOM05D000395 ORTHO05D000088 1.2e-08 63.9 118 29.7
BolC5t32194H Brassica oleracea HOM05D000395 ORTHO05D000088 1.2e-08 63.9 118 29.7
BraA05t20971Z Brassica rapa HOM05D000395 ORTHO05D000088 1.2e-08 63.9 118 29.7
Thhalv10012062m.g Eutrema salsugineum HOM05D000395 ORTHO05D000088 1.2e-08 63.9 118 29.7
QL09p026069 Quercus lobata HOM05D000395 ORTHO05D000088 1.2e-08 63.9 123 26.8
BcaB06g25953 Brassica carinata HOM05D000395 ORTHO05D000088 1.5e-08 63.5 118 29.7
A05p30590 Brassica napus HOM05D000395 ORTHO05D000088 1.5e-08 63.5 118 29.7
C05p46450 Brassica napus HOM05D000395 ORTHO05D001172 1.5e-08 63.5 118 29.7
BolC5t33375H Brassica oleracea HOM05D000395 ORTHO05D000088 1.5e-08 63.5 118 29.7
BraA05t21901Z Brassica rapa HOM05D000395 ORTHO05D000088 1.5e-08 63.5 118 29.7
CARHR039490 Cardamine hirsuta HOM05D000395 ORTHO05D000088 1.5e-08 63.5 118 29.7
QL09p026034 Quercus lobata HOM05D000395 ORTHO05D000088 1.5e-08 63.5 119 27.7
Rhsim09G0072000 Rhododendron simsii HOM05D000395 ORTHO05D000088 1.5e-08 63.5 159 27.7
SHI13295 Sapria himalayana HOM05D000395 ORTHO05D000088 1.5e-08 63.5 120 29.2
Sp1g36320 Schrenkiella parvula HOM05D000395 ORTHO05D000088 1.5e-08 63.5 118 29.7
Duzib052G1088 Durio zibethinus HOM05D000395 ORTHO05D000088 2.0e-08 63.2 119 31.1
Manes.15G145300 Manihot esculenta HOM05D000395 ORTHO05D000088 2.0e-08 63.2 156 30.8
BcaB02g11075 Brassica carinata HOM05D000395 ORTHO05D000088 2.6e-08 62.8 118 28.8
BcaC09g48867 Brassica carinata HOM05D000395 ORTHO05D000088 2.6e-08 62.8 118 29.7
C01p45030 Brassica napus HOM05D000395 ORTHO05D000088 2.6e-08 62.8 118 29.7
Cpa.g.sc62.76 Carica papaya HOM05D000395 ORTHO05D000088 2.6e-08 62.8 121 31.4
Sabra04G0084800 Salix brachista HOM05D000395 ORTHO05D000088 2.6e-08 62.8 148 25.0
THA.LOC104808453 Tarenaya hassleriana HOM05D000395 ORTHO05D000088 2.6e-08 62.8 118 30.5
AT1G49480 Arabidopsis thaliana HOM05D000395 ORTHO05D000088 3.4e-08 62.4 118 29.7
QL09p026224 Quercus lobata HOM05D000395 ORTHO05D000088 3.4e-08 62.4 124 26.6
TWI79G1438 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 3.4e-08 62.4 112 29.5
Gohir.A13G036900 Gossypium hirsutum HOM05D000395 ORTHO05D000088 4.4e-08 62.0 121 31.4
Gohir.D13G035200 Gossypium hirsutum HOM05D000395 ORTHO05D000088 4.4e-08 62.0 121 31.4
Gorai.013G040000 Gossypium raimondii HOM05D000395 ORTHO05D000088 4.4e-08 62.0 121 31.4
TAR628G1113 Trochodendron aralioides HOM05D000395 ORTHO05D000088 4.4e-08 62.0 118 29.7
BcaB04g17331 Brassica carinata HOM05D000395 ORTHO05D000088 5.8e-08 61.6 116 30.2
BcaC07g37046 Brassica carinata HOM05D000395 ORTHO05D000088 5.8e-08 61.6 116 30.2
A03p40930 Brassica napus HOM05D000395 ORTHO05D000088 5.8e-08 61.6 118 29.7
BraA03t13252Z Brassica rapa HOM05D000395 ORTHO05D000088 5.8e-08 61.6 118 29.7
CSS0005810 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 5.8e-08 61.6 106 30.2
Prupe.7G044800 Prunus persica HOM05D000395 ORTHO05D000088 5.8e-08 61.6 114 31.6
Sabra04G0097200 Salix brachista HOM05D000395 ORTHO05D000088 5.8e-08 61.6 122 27.0
Atru.chr5.2786 Acer truncatum HOM05D000395 ORTHO05D000088 9.9e-08 60.8 77 33.8
Aa31LG10G4510 Aethionema arabicum HOM05D000395 ORTHO05D000088 9.9e-08 60.8 118 28.8
BcaC01g03660 Brassica carinata HOM05D000395 ORTHO05D000088 9.9e-08 60.8 118 29.7
C03p49970 Brassica napus HOM05D000395 ORTHO05D000088 9.9e-08 60.8 118 29.7
BolC3t17288H Brassica oleracea HOM05D000395 ORTHO05D000088 9.9e-08 60.8 118 29.7
CSS0021571 Camellia sinensis var. sinensis HOM05D000395 ORTHO05D000088 9.9e-08 60.8 117 31.6
Gohir.A13G036800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 9.9e-08 60.8 121 31.4
Gohir.D13G035100 Gossypium hirsutum HOM05D000395 ORTHO05D000088 9.9e-08 60.8 121 31.4
Gorai.013G039800 Gossypium raimondii HOM05D000395 ORTHO05D000088 9.9e-08 60.8 121 31.4
QL09p026218 Quercus lobata HOM05D000395 ORTHO05D000088 9.9e-08 60.8 153 24.8
TWI09G0236 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 9.9e-08 60.8 115 27.0
BcaC07g37045 Brassica carinata HOM05D000395 ORTHO05D000088 1.3e-07 60.5 116 29.3
Gohir.D12G067800 Gossypium hirsutum HOM05D000395 ORTHO05D000088 1.3e-07 60.5 123 26.8
MD10G1086900 Malus domestica HOM05D000395 ORTHO05D000088 1.3e-07 60.5 118 31.4
TAR381G0288 Trochodendron aralioides HOM05D000395 ORTHO05D000088 1.3e-07 60.5 115 31.3
Dinv27599 Davidia involucrata HOM05D000395 ORTHO05D000088 1.7e-07 60.1 128 28.9
Thecc.02G092800 Theobroma cacao HOM05D000395 ORTHO05D000088 1.7e-07 60.1 114 28.1
TWI75G0490 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 1.7e-07 60.1 140 28.6
BolC8t47210H Brassica oleracea HOM05D000395 ORTHO05D000088 2.2e-07 59.7 116 29.3
Cfa015901 Carpinus fangiana HOM05D000395 ORTHO05D000088 2.2e-07 59.7 113 29.2
FvH4_7g07610 Fragaria vesca HOM05D000395 ORTHO05D000088 2.2e-07 59.7 116 32.8
Gorai.008G071200 Gossypium raimondii HOM05D000395 ORTHO05D000088 2.2e-07 59.7 123 26.8
CiPaw.05G058400 Carya illinoinensis HOM05D000395 ORTHO05D000088 3.8e-07 58.9 152 28.3
Dinv26761 Davidia involucrata HOM05D000395 ORTHO05D000088 3.8e-07 58.9 121 28.9
FAN03G2926 Fragaria x ananassa HOM05D000395 ORTHO05D000088 3.8e-07 58.9 150 27.3
Gohir.A12G067300 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.8e-07 58.9 123 26.8
MBI16_g26331_MAGBIO Magnolia biondii HOM05D000395 ORTHO05D000088 3.8e-07 58.9 142 29.6
Thecc.02G092900 Theobroma cacao HOM05D000395 ORTHO05D000088 3.8e-07 58.9 121 30.6
Cfa015909 Carpinus fangiana HOM05D000395 ORTHO05D000088 4.9e-07 58.5 118 29.7
COL.COLO4_11741 Corchorus olitorius HOM05D000395 ORTHO05D000088 4.9e-07 58.5 118 31.4
FvH4_2g07320 Fragaria vesca HOM05D000395 ORTHO05D000088 4.9e-07 58.5 121 30.6
FAN15G3226 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.9e-07 58.5 121 30.6
FAN20G2447 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.9e-07 58.5 121 30.6
FAN24G1855 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.9e-07 58.5 121 30.6
FAN27G0154 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.9e-07 58.5 121 30.6
Rhsim02G0084600 Rhododendron simsii HOM05D000395 ORTHO05D000088 4.9e-07 58.5 122 28.7
Ca_20814_v3 Cicer arietinum L. HOM05D000395 ORTHO05D000088 6.4e-07 58.2 148 27.7
FvH4_7g33560 Fragaria vesca HOM05D000395 ORTHO05D000088 6.4e-07 58.2 154 27.9
FAN01G0085 Fragaria x ananassa HOM05D000395 ORTHO05D000088 6.4e-07 58.2 154 27.9
Gohir.A03G192000 Gossypium hirsutum HOM05D000395 ORTHO05D000088 6.4e-07 58.2 121 30.6
Gohir.D02G213000 Gossypium hirsutum HOM05D000395 ORTHO05D000088 6.4e-07 58.2 121 30.6
Gorai.005G240900 Gossypium raimondii HOM05D000395 ORTHO05D000088 6.4e-07 58.2 121 30.6
Potri.004G147000 Populus trichocarpa HOM05D000395 ORTHO05D000088 6.4e-07 58.2 124 26.6
MD05G1072500 Malus domestica HOM05D000395 ORTHO05D000088 8.4e-07 57.8 118 30.5
Prupe.8G113000 Prunus persica HOM05D000395 ORTHO05D000088 8.4e-07 57.8 121 29.8
QL06p043901 Quercus lobata HOM05D000395 ORTHO05D000088 8.4e-07 57.8 124 28.2
TWI79G0282 Tripterygium wilfordii HOM05D000395 ORTHO05D000088 8.4e-07 57.8 121 29.8
arahy.Tifrunner.gnm1.ann1.ARIM3Z Arachis hypogaea HOM05D000395 ORTHO05D000088 1.1e-06 57.4 119 30.3
CANSAT56G1143 Cannabis sativa HOM05D019975 ORTHO05D000088 1.1e-06 57.4 109 30.3
Manes.07G115100 Manihot esculenta HOM05D000395 ORTHO05D000088 1.1e-06 57.4 140 27.1
Nn6g32143 Nelumbo nucifera HOM05D000395 ORTHO05D000088 1.1e-06 57.4 122 31.1
PSO675G1151 Papaver somniferum HOM05D000395 ORTHO05D000088 1.1e-06 57.4 116 31.9
QL11p039152 Quercus lobata HOM05D000395 ORTHO05D000088 1.1e-06 57.4 121 28.9
RcHm_v2.0_Chr1g0383811 Rosa chinensis HOM05D000395 ORTHO05D000088 1.1e-06 57.4 122 27.0
RcHm_v2.0_Chr6g0259941 Rosa chinensis HOM05D000395 ORTHO05D000088 1.1e-06 57.4 121 30.6
Ciclev10028984m.g Citrus clementina HOM05D000395 ORTHO05D000088 1.4e-06 57.0 117 29.1
Duzib132G0114 Durio zibethinus HOM05D000395 ORTHO05D000088 1.4e-06 57.0 121 28.9
Lalb_Chr19g0138491 Lupinus albus HOM05D000395 ORTHO05D000088 1.4e-06 57.0 121 28.1
Atru.chr5.2847 Acer truncatum HOM05D000395 ORTHO05D000088 1.9e-06 56.6 121 29.8
Manes.15G145000 Manihot esculenta HOM05D000395 ORTHO05D000088 1.9e-06 56.6 121 30.6
PGR042G3952 Punica granatum HOM05D000395 ORTHO05D000088 1.9e-06 56.6 121 28.1
Duzib264G0510 Durio zibethinus HOM05D000395 ORTHO05D000088 2.4e-06 56.2 96 21.9
Glyma.12G048600 Glycine max HOM05D000395 ORTHO05D000088 2.4e-06 56.2 121 28.9
arahy.Tifrunner.gnm1.ann1.6WA88G Arachis hypogaea HOM05D000395 ORTHO05D000088 3.2e-06 55.8 118 29.7
CANSAT25G3335 Cannabis sativa HOM05D000395 ORTHO05D000088 3.2e-06 55.8 140 27.9
Cfa015900 Carpinus fangiana HOM05D000395 ORTHO05D000088 3.2e-06 55.8 150 30.7
DCAR_010940 Daucus carota HOM05D000395 ORTHO05D000088 3.2e-06 55.8 97 30.9
Gohir.A01G005500 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.2e-06 55.8 121 31.4
Gohir.D01G005600 Gossypium hirsutum HOM05D000395 ORTHO05D000088 3.2e-06 55.8 121 31.4
Gorai.002G006500 Gossypium raimondii HOM05D000395 ORTHO05D000088 3.2e-06 55.8 121 31.4
Sed0019996 Sechium edule HOM05D000395 ORTHO05D000088 3.2e-06 55.8 119 27.7
FAN10G2931 Fragaria x ananassa HOM05D000395 ORTHO05D000088 4.2e-06 55.5 116 30.2
Rhsim02G0221100 Rhododendron simsii HOM05D000395 ORTHO05D000088 4.2e-06 55.5 118 29.7
RcHm_v2.0_Chr2g0103541 Rosa chinensis HOM05D000395 ORTHO05D000088 4.2e-06 55.5 110 29.1
Sabra04G0097100 Salix brachista HOM05D000395 ORTHO05D000088 4.2e-06 55.5 145 28.3
Lj3g0017919 Lotus japonicus HOM05D000395 ORTHO05D000088 5.4e-06 55.1 121 28.9
Lalb_Chr01g0003031 Lupinus albus HOM05D000395 ORTHO05D000088 5.4e-06 55.1 121 27.3
Prupe.7G144200 Prunus persica HOM05D000395 ORTHO05D000088 5.4e-06 55.1 110 23.6
Cfa015899 Carpinus fangiana HOM05D000395 ORTHO05D000088 7.1e-06 54.7 163 27.6
Ca_12476_v3 Cicer arietinum L. HOM05D000395 ORTHO05D000088 7.1e-06 54.7 147 26.5
Ciclev10030007m.g Citrus clementina HOM05D000395 ORTHO05D000088 7.1e-06 54.7 66 50.0
COL.COLO4_11742 Corchorus olitorius HOM05D000395 ORTHO05D000088 7.1e-06 54.7 124 26.6
Duzib248G1644 Durio zibethinus HOM05D000395 ORTHO05D000088 7.1e-06 54.7 119 27.7
Medtr4g068320 Medicago truncatula HOM05D000395 ORTHO05D000088 7.1e-06 54.7 148 26.4
Oeu003705.1 Olea europaea HOM05D000395 ORTHO05D000088 7.1e-06 54.7 114 27.2
Psat0s3452g0040 Pisum sativum HOM05D000395 ORTHO05D000088 7.1e-06 54.7 121 28.9
FvH4_1g14680 Fragaria vesca HOM05D000395 ORTHO05D000088 9.2e-06 54.3 147 27.2
Nitab4.5_0001401g0160 Nicotiana tabacum HOM05D000395 ORTHO05D000088 9.2e-06 54.3 118 28.0
Phvul.011G050600 Phaseolus vulgaris HOM05D000395 ORTHO05D000088 9.2e-06 54.3 118 28.8


User provided reference genes

Program Settings