Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10029471m.g Citrus clementina HOM05D004188 ORTHO05D004445 5.0e-58 228.0 159 100.0
Duzib168G0960 Durio zibethinus HOM05D004188 ORTHO05D004445 1.3e-16 90.5 155 47.7
Gohir.D03G134100 Gossypium hirsutum HOM05D004188 ORTHO05D004445 1.3e-16 90.5 162 46.9
Gorai.003G141200 Gossypium raimondii HOM05D004188 ORTHO05D004445 1.6e-16 90.1 162 46.9
Gohir.A03G034200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.1e-16 89.7 162 46.3
Duzib170G0015 Durio zibethinus HOM05D004188 ORTHO05D004445 2.4e-15 86.3 155 40.6
Gohir.D05G102200 Gossypium hirsutum HOM05D004188 ORTHO05D004445 2.9e-13 79.3 159 44.7
Prupe.6G101100 Prunus persica HOM05D004188 ORTHO05D004445 2.9e-13 79.3 71 57.7
Duzib150G1311 Durio zibethinus HOM05D004188 ORTHO05D004445 8.4e-13 77.8 167 40.1
Manes.04G021600 Manihot esculenta HOM05D004188 ORTHO05D004445 8.4e-13 77.8 115 48.7
RcHm_v2.0_Chr5g0059401 Rosa chinensis HOM05D004188 ORTHO05D004445 8.4e-13 77.8 71 56.3
FAN11G3469 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.9e-12 76.6 68 57.4
PGR119G2389 Punica granatum HOM05D015476 ORTHO05D004445 2.4e-12 76.3 71 63.4
MBI07_g19312_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 4.2e-12 75.5 64 65.6
Cfa011320 Carpinus fangiana HOM05D004188 ORTHO05D004445 7.1e-12 74.7 72 56.9
TWI75G1406 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 9.3e-12 74.3 151 47.7
CsaV3_1G012810 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.2e-11 73.9 154 50.0
FAN25G0660 Fragaria x ananassa HOM05D004188 ORTHO05D004445 1.6e-11 73.6 116 47.4
Atru.chr3.3633 Acer truncatum HOM05D004188 ORTHO05D004445 3.5e-11 72.4 176 47.7
FAN16G2082 Fragaria x ananassa HOM05D004188 ORTHO05D004445 3.5e-11 72.4 116 56.0
Manes.11G144800 Manihot esculenta HOM05D004188 ORTHO05D004445 3.5e-11 72.4 73 54.8
CANSAT54G2412 Cannabis sativa HOM05D004188 ORTHO05D004445 3.9e-10 68.9 73 49.3
Glyma.11G146900 Glycine max HOM05D004188 ORTHO05D004445 3.9e-10 68.9 66 56.1
Glyma.12G067800 Glycine max HOM05D004188 ORTHO05D004445 3.9e-10 68.9 69 55.1
PGR102G1665 Punica granatum HOM05D004188 ORTHO05D004445 3.9e-10 68.9 73 54.8
Lalb_Chr14g0374691 Lupinus albus HOM05D004188 ORTHO05D004445 5.1e-10 68.6 72 55.6
Gorai.009G106500 Gossypium raimondii HOM05D004188 ORTHO05D004445 6.6e-10 68.2 159 47.2
CiPaw.14G080400 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.9e-09 66.6 69 52.2
ECA233G4889 Erigeron canadensis HOM05D004188 ORTHO05D004445 2.5e-09 66.2 73 53.4
Lalb_Chr22g0350231 Lupinus albus HOM05D004188 ORTHO05D004445 2.5e-09 66.2 71 59.2
Potri.009G013500 Populus trichocarpa HOM05D004188 ORTHO05D004445 3.3e-09 65.9 82 50.0
Sabra09G0008000 Salix brachista HOM05D004188 ORTHO05D004445 3.3e-09 65.9 73 53.4
Glyma.12G172900 Glycine max HOM05D004188 ORTHO05D004445 5.6e-09 65.1 70 48.6
Oeu001268.1 Olea europaea HOM05D004188 ORTHO05D004445 5.6e-09 65.1 71 53.5
FvH4_3g32420 Fragaria vesca HOM05D004188 ORTHO05D004445 7.3e-09 64.7 44 70.5
Gohir.A05G102500 Gossypium hirsutum HOM05D004188 ORTHO05D004445 9.6e-09 64.3 159 40.3
TWI31G0432 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 1.3e-08 63.9 73 54.8
Solyc06g016790.3 Solanum lycopersicum HOM05D004188 ORTHO05D004445 1.6e-08 63.5 110 40.9
Medtr4g059520 Medicago truncatula HOM05D004188 ORTHO05D004445 2.1e-08 63.2 69 50.7
Medtr4g459420 Medicago truncatula HOM05D004188 ORTHO05D004445 2.1e-08 63.2 69 50.7
Phvul.011G078900 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 2.1e-08 63.2 69 50.7
Rhsim01G0217100 Rhododendron simsii HOM05D004188 ORTHO05D004445 2.1e-08 63.2 158 38.6
Sabra04G0141900 Salix brachista HOM05D004188 ORTHO05D004445 2.1e-08 63.2 44 75.0
PGSC0003DMG400029164 Solanum tuberosum HOM05D004188 ORTHO05D004445 2.1e-08 63.2 143 45.5
MELO3C026856.2 Cucumis melo HOM05D004188 ORTHO05D004445 2.8e-08 62.8 73 46.6
VMungo1127G1131 Vigna mungo HOM05D000847 ORTHO05D003278 2.8e-08 62.8 177 42.4
Thecc.09G340200 Theobroma cacao HOM05D004188 ORTHO05D004445 3.6e-08 62.4 73 54.8
A10p17820 Brassica napus HOM05D004188 ORTHO05D004445 4.8e-08 62.0 68 51.5
Cc01_g11150 Coffea canephora HOM05D004188 ORTHO05D004445 4.8e-08 62.0 73 50.7
unitig_736.g22415 Utricularia gibba HOM05D004188 ORTHO05D004445 4.8e-08 62.0 44 65.9
AL5G23790 Arabidopsis lyrata HOM05D004188 ORTHO05D004445 6.2e-08 61.6 180 39.4
arahy.Tifrunner.gnm1.ann1.86U5T6 Arachis hypogaea HOM05D004188 ORTHO05D004445 6.2e-08 61.6 69 55.1
arahy.Tifrunner.gnm1.ann1.D47N05 Arachis hypogaea HOM05D004188 ORTHO05D004445 6.2e-08 61.6 69 55.1
A06p21540 Brassica napus HOM05D004188 ORTHO05D004445 8.1e-08 61.2 163 39.3
CARHR150740 Cardamine hirsuta HOM05D004188 ORTHO05D004445 8.1e-08 61.2 66 51.5
FAN21G0748 Fragaria x ananassa HOM05D004188 ORTHO05D004445 8.1e-08 61.2 44 68.2
Lj3g0014225 Lotus japonicus HOM05D004188 ORTHO05D004445 8.1e-08 61.2 70 47.1
AT3G45230 Arabidopsis thaliana HOM05D004188 ORTHO05D004445 1.1e-07 60.8 159 42.8
CiPaw.13G112700 Carya illinoinensis HOM05D004188 ORTHO05D004445 1.1e-07 60.8 166 36.7
ClCG03G002160 Citrullus lanatus HOM05D004188 ORTHO05D004445 1.1e-07 60.8 73 46.6
CsaV3_6G013900 Cucumis sativus L. HOM05D004188 ORTHO05D004445 1.1e-07 60.8 76 51.3
arahy.Tifrunner.gnm1.ann1.70MDEI Arachis hypogaea HOM05D004188 ORTHO05D004445 1.4e-07 60.5 71 46.5
arahy.Tifrunner.gnm1.ann1.P4NYDW Arachis hypogaea HOM05D004188 ORTHO05D004445 1.4e-07 60.5 71 46.5
BcaB01g01101 Brassica carinata HOM05D004188 ORTHO05D004445 1.4e-07 60.5 156 40.4
BcaC01g01980 Brassica carinata HOM05D004188 ORTHO05D004445 1.4e-07 60.5 163 39.3
C03p69850 Brassica napus HOM05D004188 ORTHO05D004445 1.4e-07 60.5 163 39.3
BolC3t19246H Brassica oleracea HOM05D004188 ORTHO05D004445 1.4e-07 60.5 163 39.3
CAN.G920.1 Capsicum annuum HOM05D004188 ORTHO05D004445 1.4e-07 60.5 109 43.1
Hma1.2p1_1031F.1_g250070 Hydrangea macrophylla HOM05D004188 ORTHO05D004445 1.4e-07 60.5 66 51.5
CAN.G631.25 Capsicum annuum HOM05D004188 ORTHO05D004445 1.8e-07 60.1 71 49.3
DCAR_006061 Daucus carota HOM05D004188 ORTHO05D004445 1.8e-07 60.1 72 45.8
Thhalv10017667m.g Eutrema salsugineum HOM05D011190 ORTHO05D013686 1.8e-07 60.1 73 45.2
Lalb_Chr03g0027321 Lupinus albus HOM05D004188 ORTHO05D004445 1.8e-07 60.1 55 58.2
Oeu002868.1 Olea europaea HOM05D004188 ORTHO05D004445 1.8e-07 60.1 70 48.6
Oeu030181.1 Olea europaea HOM05D004188 ORTHO05D004445 1.8e-07 60.1 71 52.1
Sopen11g028110 Solanum pennellii HOM05D004188 ORTHO05D004445 1.8e-07 60.1 159 35.8
PGSC0003DMG400008124 Solanum tuberosum HOM05D004188 ORTHO05D004445 1.8e-07 60.1 71 46.5
BraA06t25239Z Brassica rapa HOM05D004188 ORTHO05D004445 2.4e-07 59.7 161 45.3
Sed0015663 Sechium edule HOM05D004188 ORTHO05D004445 2.4e-07 59.7 52 59.6
AL4G21580 Arabidopsis lyrata HOM05D011190 ORTHO05D013686 3.1e-07 59.3 70 42.9
BraA10t43861Z Brassica rapa HOM05D004188 ORTHO05D004445 3.1e-07 59.3 67 50.7
MELO3C025771.2 Cucumis melo HOM05D004188 ORTHO05D004445 3.1e-07 59.3 76 50.0
MBI10_g41700_MAGBIO Magnolia biondii HOM05D004188 ORTHO05D004445 3.1e-07 59.3 71 49.3
Sed0026517 Sechium edule HOM05D004188 ORTHO05D004445 3.1e-07 59.3 70 50.0
EL10Ac9g22513 Beta vulgaris HOM05D004188 ORTHO05D004445 4.0e-07 58.9 63 55.6
BcaB08g36360 Brassica carinata HOM05D004188 ORTHO05D004445 4.0e-07 58.9 68 48.5
Lsat_1_v5_gn_1_65340 Lactuca sativa HOM05D004188 ORTHO05D004445 4.0e-07 58.9 140 40.0
THA.LOC104810856 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 4.0e-07 58.9 73 58.9
BcaNung07071 Brassica carinata HOM05D011190 ORTHO05D013686 5.3e-07 58.5 55 47.3
Lsat_1_v5_gn_6_46020 Lactuca sativa HOM05D004188 ORTHO05D004445 5.3e-07 58.5 163 45.4
ClCG02G021140 Citrullus lanatus HOM05D004188 ORTHO05D004445 6.9e-07 58.2 61 57.4
Medtr2g094170 Medicago truncatula HOM05D004188 ORTHO05D004445 6.9e-07 58.2 70 41.4
Nitab4.5_0000650g0240 Nicotiana tabacum HOM05D004188 ORTHO05D004445 6.9e-07 58.2 71 50.7
Psat5g278280 Pisum sativum HOM05D004188 ORTHO05D004445 6.9e-07 58.2 44 56.8
VMungo1080G0149 Vigna mungo HOM05D004188 ORTHO05D004445 6.9e-07 58.2 66 48.5
Aa31LG5G7780 Aethionema arabicum HOM05D011190 ORTHO05D013686 9.0e-07 57.8 53 50.9
AT2G28440 Arabidopsis thaliana HOM05D011190 ORTHO05D013686 9.0e-07 57.8 70 42.9
Ca_01416_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 9.0e-07 57.8 116 49.1
THA.LOC104799503 Tarenaya hassleriana HOM05D004188 ORTHO05D004445 9.0e-07 57.8 44 70.5
Rhsim01G0217000 Rhododendron simsii HOM05D004188 ORTHO05D004445 1.2e-06 57.4 164 40.9
Sc06g0010170 Simmondsia chinensis HOM05D004188 ORTHO05D004445 1.2e-06 57.4 42 64.3
TWI79G1650 Tripterygium wilfordii HOM05D004188 ORTHO05D004445 2.0e-06 56.6 40 67.5
TAR629G0463 Trochodendron aralioides HOM05D004188 ORTHO05D004445 2.0e-06 56.6 166 36.1
HanXRQChr13g0403511 Helianthus annuus HOM05D004188 ORTHO05D004445 2.6e-06 56.2 43 69.8
Phvul.005G135700 Phaseolus vulgaris HOM05D004188 ORTHO05D004445 2.6e-06 56.2 44 54.5
Ah.01g014350 Amaranthus hybridus HOM05D004188 ORTHO05D004445 3.4e-06 55.8 44 59.1
C04p22940 Brassica napus HOM05D011190 ORTHO05D013686 3.4e-06 55.8 54 46.3
BolC4t23788H Brassica oleracea HOM05D011190 ORTHO05D013686 3.4e-06 55.8 54 46.3
Ca_05256_v3 Cicer arietinum L. HOM05D004188 ORTHO05D004445 3.4e-06 55.8 155 46.5
Migut.D02222 Erythranthe guttata HOM05D004188 ORTHO05D004445 3.4e-06 55.8 53 62.3
Migut.D02278 Erythranthe guttata HOM05D004188 ORTHO05D004445 3.4e-06 55.8 53 62.3
Sp4g11260 Schrenkiella parvula HOM05D011190 ORTHO05D013686 3.4e-06 55.8 55 47.3
TPR.G11601 Trifolium pratense HOM05D004188 ORTHO05D004445 3.4e-06 55.8 70 41.4
BcaB01g04664 Brassica carinata HOM05D004188 ORTHO05D004445 4.5e-06 55.5 141 37.6
Mapoly0127s0007 Marchantia polymorpha HOM05D004188 ORTHO05D004445 4.5e-06 55.5 51 60.8
Nitab4.5_0012712g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 4.5e-06 55.5 152 43.4
Sopen06g005740 Solanum pennellii HOM05D004188 ORTHO05D004445 4.5e-06 55.5 109 49.5
Nitab4.5_0011114g0020 Nicotiana tabacum HOM05D004188 ORTHO05D004445 5.8e-06 55.1 64 50.0
Prupe.2G214100 Prunus persica HOM05D004188 ORTHO05D004445 5.8e-06 55.1 54 50.0
arahy.Tifrunner.gnm1.ann1.H0Z3H2 Arachis hypogaea HOM05D004188 ORTHO05D004445 7.6e-06 54.7 54 55.6
Thhalv10002916m.g Eutrema salsugineum HOM05D004188 ORTHO05D004445 7.6e-06 54.7 72 50.0
Psat7g224760 Pisum sativum HOM05D004188 ORTHO05D004445 7.6e-06 54.7 44 61.4
TPR.G15542 Trifolium pratense HOM05D004188 ORTHO05D004445 7.6e-06 54.7 156 46.8
HPP92_005145 Vanilla planifolia HOM05D053319 ORTHO05D004445 7.6e-06 54.7 44 54.5
CANSAT56G2191 Cannabis sativa HOM05D004188 ORTHO05D004445 9.9e-06 54.3 57 54.4
Potri.004G210300 Populus trichocarpa HOM05D004188 ORTHO05D004445 9.9e-06 54.3 166 40.4


User provided reference genes

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