Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028864m.g Citrus clementina HOM05D005183 ORTHO05D006684 1.1e-173 613.2 316 100.0
GSVIVG01033782001 Vitis vinifera HOM05D005183 ORTHO05D006684 3.0e-147 525.4 314 83.1
Manes.08G020900 Manihot esculenta HOM05D005183 ORTHO05D006684 2.6e-146 522.3 314 82.5
Duzib128G1222 Durio zibethinus HOM05D005183 ORTHO05D006684 4.4e-146 521.5 314 84.1
COL.COLO4_29815 Corchorus olitorius HOM05D005183 ORTHO05D006684 5.7e-146 521.2 314 84.1
Gohir.D01G198400 Gossypium hirsutum HOM05D005183 ORTHO05D006684 2.8e-145 518.8 314 83.4
Gorai.002G242600 Gossypium raimondii HOM05D005183 ORTHO05D006684 6.3e-145 517.7 314 83.1
Gohir.A01G209300 Gossypium hirsutum HOM05D005183 ORTHO05D006684 1.4e-144 516.5 314 82.5
Potri.015G088700 Populus trichocarpa HOM05D005183 ORTHO05D006684 2.0e-143 512.7 314 81.8
Thecc.05G081000 Theobroma cacao HOM05D005183 ORTHO05D006684 3.5e-143 511.9 314 82.5
Nn4g24833 Nelumbo nucifera HOM05D005183 ORTHO05D006684 8.5e-142 507.3 314 80.6
Cpa.g.sc111.25 Carica papaya HOM05D005183 ORTHO05D006684 3.2e-141 505.4 313 82.1
CiPaw.09G008700 Carya illinoinensis HOM05D005183 ORTHO05D006684 1.6e-140 503.1 316 78.8
PGR004G1465 Punica granatum HOM05D005183 ORTHO05D006684 3.6e-140 501.9 314 79.9
QL07p040540 Quercus lobata HOM05D005183 ORTHO05D006684 1.8e-139 499.6 314 79.3
Nn2g14627 Nelumbo nucifera HOM05D005183 ORTHO05D006684 5.2e-139 498.0 314 78.3
Eucgr.A01543 Eucalyptus grandis HOM05D005183 ORTHO05D006684 1.2e-138 496.9 311 79.1
Oeu040539.1 Olea europaea HOM05D005183 ORTHO05D006684 2.2e-137 492.7 314 77.4
Dinv19828 Davidia involucrata HOM05D005183 ORTHO05D006684 1.1e-136 490.3 314 77.4
Lalb_Chr06g0173361 Lupinus albus HOM05D005183 ORTHO05D006684 1.1e-136 490.3 314 78.0
ClCG10G019350 Citrullus lanatus HOM05D005183 ORTHO05D006684 1.4e-136 490.0 314 78.0
TAR371G0749 Trochodendron aralioides HOM05D005183 ORTHO05D006684 1.8e-136 489.6 312 78.8
THA.LOC104808666 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 3.1e-136 488.8 313 78.9
TWI74G1514 Tripterygium wilfordii HOM05D005183 ORTHO05D006684 7.0e-136 487.6 314 79.0
MELO3C018272.2 Cucumis melo HOM05D005183 ORTHO05D006684 2.7e-135 485.7 314 76.8
Atru.chr8.1634 Acer truncatum HOM05D005183 ORTHO05D006684 5.9e-135 484.6 271 87.5
Sed0001030 Sechium edule HOM05D005183 ORTHO05D006684 5.9e-135 484.6 299 78.9
VMungo0720G1906 Vigna mungo HOM05D005183 ORTHO05D006684 1.3e-134 483.4 315 77.1
Glyma.13G151300 Glycine max HOM05D005183 ORTHO05D006684 1.7e-134 483.0 314 76.8
Hund27408 Selenicereus undatus HOM05D005183 ORTHO05D006684 1.7e-134 483.0 312 78.8
Ca_06436_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 2.2e-134 482.6 314 75.2
Cfa016373 Carpinus fangiana HOM05D005183 ORTHO05D006684 3.8e-134 481.9 316 75.9
CsaV3_3G036840 Cucumis sativus L. HOM05D005183 ORTHO05D006684 3.8e-134 481.9 313 76.4
Glyma.10G066200 Glycine max HOM05D005183 ORTHO05D006684 3.8e-134 481.9 314 76.4
Hma1.2p1_0611F.1_g188660 Hydrangea macrophylla HOM05D005183 ORTHO05D006684 5.0e-134 481.5 314 75.2
PGSC0003DMG400028174 Solanum tuberosum HOM05D005183 ORTHO05D006684 1.5e-133 479.9 313 75.4
Aqoxy2G03309 Aquilegia oxysepala HOM05D005183 ORTHO05D006684 1.9e-133 479.6 314 75.2
Phvul.007G223300 Phaseolus vulgaris HOM05D005183 ORTHO05D006684 1.9e-133 479.6 314 75.8
Sabra15G0111600 Salix brachista HOM05D005183 ORTHO05D006684 2.5e-133 479.2 314 76.8
Sc20g0006050 Simmondsia chinensis HOM05D005183 ORTHO05D006684 2.5e-133 479.2 313 77.6
Cfa008157 Carpinus fangiana HOM05D005183 ORTHO05D006684 5.5e-133 478.0 316 75.6
Haze_00122 Corylus avellana HOM05D005183 ORTHO05D006684 1.6e-132 476.5 343 71.1
Solyc10g083600.2 Solanum lycopersicum HOM05D005183 ORTHO05D006684 2.1e-132 476.1 313 74.8
Aa31LG8G10050 Aethionema arabicum HOM05D005183 ORTHO05D006684 2.7e-132 475.7 311 75.2
CAN.G1138.15 Capsicum annuum HOM05D005183 ORTHO05D006684 3.6e-132 475.3 312 75.0
Oeu013577.1 Olea europaea HOM05D005183 ORTHO05D006684 4.7e-132 474.9 314 75.2
Psat6g078200 Pisum sativum HOM05D005183 ORTHO05D006684 1.0e-131 473.8 314 73.6
Ah.09g233440 Amaranthus hybridus HOM05D005183 ORTHO05D006684 1.4e-131 473.4 313 76.4
Sopen10g033080 Solanum pennellii HOM05D005183 ORTHO05D006684 1.8e-131 473.0 313 74.4
TPR.G28986 Trifolium pratense HOM05D005183 ORTHO05D006684 1.8e-131 473.0 314 73.9
Hund17099 Selenicereus undatus HOM05D005183 ORTHO05D006684 3.0e-131 472.2 313 78.0
Cc09_g05380 Coffea canephora HOM05D005183 ORTHO05D006684 5.2e-131 471.5 314 73.6
Actinidia10400 Actinidia chinensis HOM05D005183 ORTHO05D006684 8.8e-131 470.7 314 73.2
CSS0041546 Camellia sinensis var. sinensis HOM05D005183 ORTHO05D006684 8.8e-131 470.7 314 73.9
Nitab4.5_0002715g0140 Nicotiana tabacum HOM05D005183 ORTHO05D006684 1.2e-130 470.3 312 74.4
EL10Ac1g00750 Beta vulgaris HOM05D005183 ORTHO05D006684 1.5e-130 469.9 313 75.4
Lj5g0003294 Lotus japonicus HOM05D005183 ORTHO05D006684 2.0e-130 469.5 313 74.4
Peaxi162Scf00110g02022 Petunia axillaris HOM05D005183 ORTHO05D006684 2.0e-130 469.5 314 73.9
AUR62023398 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.3e-129 466.8 316 74.7
Thhalv10021169m.g Eutrema salsugineum HOM05D005183 ORTHO05D006684 1.3e-129 466.8 312 73.1
AUR62013753 Chenopodium quinoa HOM05D005183 ORTHO05D006684 1.7e-129 466.5 316 74.4
AL3G38300 Arabidopsis lyrata HOM05D005183 ORTHO05D006684 6.3e-129 464.5 314 74.2
Carub.0003s2385 Capsella rubella HOM05D005183 ORTHO05D006684 6.3e-129 464.5 299 74.6
BcaC06g35547 Brassica carinata HOM05D005183 ORTHO05D006684 8.3e-129 464.2 314 72.3
BolC7t41857H Brassica oleracea HOM05D005183 ORTHO05D006684 8.3e-129 464.2 314 72.3
DCAR_010653 Daucus carota HOM05D005183 ORTHO05D006684 1.4e-128 463.4 313 71.9
A07p08780 Brassica napus HOM05D005183 ORTHO05D006684 2.4e-128 462.6 314 72.0
C07p13620 Brassica napus HOM05D005183 ORTHO05D006684 2.4e-128 462.6 314 72.0
BraA07t28669Z Brassica rapa HOM05D005183 ORTHO05D006684 5.4e-128 461.5 314 71.7
DCAR_029401 Daucus carota HOM05D005183 ORTHO05D006684 7.0e-128 461.1 313 71.2
MSTRG.5807 Avicennia marina HOM05D005183 ORTHO05D006684 1.2e-127 460.3 311 73.0
HanXRQChr02g0051911 Helianthus annuus HOM05D005183 ORTHO05D006684 2.0e-127 459.5 311 74.0
BcaB04g20435 Brassica carinata HOM05D005183 ORTHO05D006684 7.7e-127 457.6 313 72.8
BcaB06g26517 Brassica carinata HOM05D005183 ORTHO05D006684 7.7e-127 457.6 314 70.7
SGA_v2.0_scaffold40G15402 Striga asiatica HOM05D005183 ORTHO05D006684 5.0e-126 454.9 313 71.2
PSO478G0399 Papaver somniferum HOM05D005183 ORTHO05D006684 8.6e-126 454.1 312 73.7
Sp3g21310 Schrenkiella parvula HOM05D005183 ORTHO05D006684 8.6e-126 454.1 313 71.2
Prupe.7G117100 Prunus persica HOM05D005183 ORTHO05D006684 1.5e-125 453.4 320 72.2
AT3G23620 Arabidopsis thaliana HOM05D005183 ORTHO05D006684 1.9e-125 453.0 314 71.7
TPR.G5686 Trifolium pratense HOM05D005183 ORTHO05D006684 1.9e-125 453.0 290 74.5
Migut.J00983 Erythranthe guttata HOM05D005183 ORTHO05D006684 3.3e-125 452.2 313 70.3
PSO017G1745 Papaver somniferum HOM05D005183 ORTHO05D006684 3.3e-125 452.2 312 73.7
unitig_0.g1556 Utricularia gibba HOM05D005183 ORTHO05D006684 4.2e-125 451.8 313 71.2
Medtr1g061160 Medicago truncatula HOM05D005183 ORTHO05D006684 5.5e-125 451.4 311 72.0
BolC1t03963H Brassica oleracea HOM05D005183 ORTHO05D006684 7.2e-125 451.1 299 73.6
SGA_v2.0_scaffold75G24795 Striga asiatica HOM05D005183 ORTHO05D006684 7.2e-125 451.1 313 70.9
ATR0559G171 Amborella trichopoda HOM05D005183 ORTHO05D006684 9.5e-125 450.7 313 73.8
MD12G1018000 Malus domestica HOM05D005183 ORTHO05D006684 9.5e-125 450.7 317 71.3
vmacro17863 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 9.5e-125 450.7 341 67.4
C01p40070 Brassica napus HOM05D005183 ORTHO05D006684 1.6e-124 449.9 299 73.2
A01p31440 Brassica napus HOM05D005183 ORTHO05D006684 2.1e-124 449.5 299 72.9
BraA01t03270Z Brassica rapa HOM05D005183 ORTHO05D006684 2.1e-124 449.5 299 72.9
Migut.N00918 Erythranthe guttata HOM05D005183 ORTHO05D006684 2.1e-124 449.5 315 69.2
CARHR099550 Cardamine hirsuta HOM05D005183 ORTHO05D006684 2.8e-124 449.1 313 71.9
Lsat_1_v5_gn_4_35140 Lactuca sativa HOM05D005183 ORTHO05D006684 2.8e-124 449.1 293 74.7
HanXRQChr17g0545251 Helianthus annuus HOM05D005183 ORTHO05D006684 6.1e-124 448.0 302 74.2
Nitab4.5_0005311g0010 Nicotiana tabacum HOM05D005183 ORTHO05D006684 6.1e-124 448.0 292 75.0
CDE08G0191 Ceratophyllum demersum HOM05D005183 ORTHO05D006684 1.5e-122 443.4 311 71.4
FvH4_6g17900 Fragaria vesca HOM05D005183 ORTHO05D006684 1.1e-120 437.2 327 66.7
FAN02G4090 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.1e-120 437.2 327 66.7
FAN14G3711 Fragaria x ananassa HOM05D005183 ORTHO05D006684 1.1e-120 437.2 327 66.7
RcHm_v2.0_Chr3g0472151 Rosa chinensis HOM05D005183 ORTHO05D006684 1.8e-120 436.4 327 67.0
Lj3A998T32 Lonicera japonica HOM05D005183 ORTHO05D006684 4.1e-120 435.3 311 69.8
FAN05G1411 Fragaria x ananassa HOM05D005183 ORTHO05D006684 2.7e-119 432.6 327 65.7
MD14G1016000 Malus domestica HOM05D005183 ORTHO05D006684 5.9e-119 431.4 300 72.0
ECA233G2114 Erigeron canadensis HOM05D005183 ORTHO05D006684 7.8e-119 431.0 286 73.4
FAN09G1214 Fragaria x ananassa HOM05D005183 ORTHO05D006684 3.9e-118 428.7 337 64.7
THA.LOC104804771 Tarenaya hassleriana HOM05D005183 ORTHO05D006684 8.6e-118 427.6 257 82.1
HPP92_026689 Vanilla planifolia HOM05D005183 ORTHO05D006684 1.9e-117 426.4 314 66.2
Zm00001eb255650 Zea mays HOM05D005183 ORTHO05D006684 4.3e-117 425.2 308 68.5
Os01g0513800 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 9.5e-117 424.1 308 68.5
Zm00001eb292270 Zea mays HOM05D005183 ORTHO05D006684 2.8e-116 422.5 308 68.2
vmacro00782 Vaccinium macrocarpon HOM05D005183 ORTHO05D006684 4.7e-116 421.8 314 68.8
Gohir.A01G215950 Gossypium hirsutum HOM05D005183 ORTHO05D006684 5.2e-115 418.3 327 68.5
HPP92_017999 Vanilla planifolia HOM05D005183 ORTHO05D006684 8.9e-115 417.5 291 68.0
SEGI_13997 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 6.6e-110 401.4 315 64.8
SEGI_31815 Sequoiadendron giganteum HOM05D005183 ORTHO05D006684 7.3e-109 397.9 316 63.6
FAN05G2784 Fragaria x ananassa HOM05D005183 ORTHO05D006684 8.3e-105 384.4 253 71.1
Lalb_Chr02g0155161 Lupinus albus HOM05D005183 ORTHO05D006684 6.4e-97 358.2 234 75.2
Rhsim11G0063800 Rhododendron simsii HOM05D005183 ORTHO05D006684 2.3e-94 349.7 314 58.9
Actinidia31290 Actinidia chinensis HOM05D005183 ORTHO05D006684 3.9e-94 349.0 314 58.6
Ca_28565_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.3e-93 345.9 223 75.8
Nitab4.5_0000132g0170 Nicotiana tabacum HOM05D005183 ORTHO05D006684 3.6e-92 342.4 226 76.1
Pp3c4_19370 Physcomitrium patens HOM05D005183 ORTHO05D006684 3.1e-91 339.3 317 56.2
Mapoly0098s0050 Marchantia polymorpha HOM05D005183 ORTHO05D006684 3.3e-85 319.3 299 54.2
SMO367G0957 Selaginella moellendorffii HOM05D005183 ORTHO05D006684 5.6e-85 318.5 314 51.9
Haze_19538 Corylus avellana HOM05D005183 ORTHO05D006684 1.1e-83 314.3 276 61.2
Pp3c26_6490 Physcomitrium patens HOM05D005183 ORTHO05D006684 9.3e-80 301.2 314 51.0
AagrBONN_evm.TU.Sc2ySwM_344.5577 Anthoceros agrestis HOM05D005183 ORTHO05D006684 5.6e-77 292.0 307 48.9
CBR_g32692 Chara braunii HOM05D012618 ORTHO05D006684 4.5e-74 282.3 288 51.7
Cre03.g197000 Chlamydomonas reinhardtii HOM05D005183 ORTHO05D006684 1.0e-70 271.2 306 47.4
Oeu037537.3 Olea europaea HOM05D005183 ORTHO05D006684 1.1e-67 261.2 230 61.3
MCO10G188 Micromonas commoda HOM05D005183 ORTHO05D006684 1.3e-65 254.2 294 47.6
HanXRQChr08g0223931 Helianthus annuus HOM05D005183 ORTHO05D006684 3.2e-48 196.4 185 58.4
PRCOL_00004600 Prasinoderma coloniale HOM05D005183 ORTHO05D006684 1.6e-47 194.1 294 39.5
Ca_11626_v3 Cicer arietinum L. HOM05D005183 ORTHO05D006684 3.2e-40 169.9 104 76.9
Lalb_Chr02g0155171 Lupinus albus HOM05D005183 ORTHO05D006684 6.7e-30 135.6 93 73.1
MSTRG.19230 Avicennia marina HOM05D005183 ORTHO05D026969 2.2e-28 130.6 90 71.1
Os05g0506900 Oryza sativa ssp. japonica HOM05D005183 ORTHO05D006684 1.8e-27 127.5 94 67.0
MELO3C028534.2 Cucumis melo HOM05D005183 ORTHO05D006684 3.6e-23 113.2 79 72.2
TAR371G0095 Trochodendron aralioides HOM05D005183 ORTHO05D045124 8.8e-22 108.6 115 54.8
C04p39730 Brassica napus HOM05D005183 ORTHO05D026969 1.1e-19 101.7 90 62.2
BolC4t25545H Brassica oleracea HOM05D005183 ORTHO05D026969 1.1e-19 101.7 90 62.2
BolC6t35803H Brassica oleracea HOM05D005183 ORTHO05D026969 9.4e-16 88.6 90 55.6
Dinv21257 Davidia involucrata HOM05D005183 ORTHO05D045124 5.2e-14 82.8 99 52.5


User provided reference genes

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