Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10027488m.g Citrus clementina HOM05D005005 ORTHO05D006178 3.8e-170 601.3 280 100.0
Ciclev10027071m.g Citrus clementina HOM05D005005 ORTHO05D006178 7.2e-169 597.0 280 99.6
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.6e-123 446.4 292 75.7
Prupe.2G042700 Prunus persica HOM05D005005 ORTHO05D006178 3.6e-91 339.0 287 57.8
RcHm_v2.0_Chr1g0326491 Rosa chinensis HOM05D005005 ORTHO05D006178 3.6e-91 339.0 301 57.5
vmacro13768 Vaccinium macrocarpon HOM05D005005 ORTHO05D006178 1.0e-90 337.4 292 57.5
MD07G1045900 Malus domestica HOM05D005005 ORTHO05D006178 1.4e-90 337.0 297 57.6
Thecc.10G142900 Theobroma cacao HOM05D005005 ORTHO05D006178 1.4e-90 337.0 294 58.2
FvH4_7g03700 Fragaria vesca HOM05D005005 ORTHO05D006178 2.3e-90 336.3 293 57.3
FAN01G1292 Fragaria x ananassa HOM05D005005 ORTHO05D006178 3.0e-90 335.9 301 55.8
Cpa.g.sc169.39 Carica papaya HOM05D005005 ORTHO05D006178 6.7e-90 334.7 295 57.3
FAN10G2457 Fragaria x ananassa HOM05D005005 ORTHO05D006178 8.8e-90 334.3 301 55.8
MD02G1278000 Malus domestica HOM05D005005 ORTHO05D006178 8.8e-90 334.3 298 56.7
Rhsim07G0069000 Rhododendron simsii HOM05D005005 ORTHO05D006178 1.5e-89 333.6 293 57.0
Gorai.010G215900 Gossypium raimondii HOM05D005005 ORTHO05D006178 2.0e-89 333.2 296 56.8
Gohir.A10G189100 Gossypium hirsutum HOM05D005005 ORTHO05D006178 3.3e-89 332.4 299 57.2
Gohir.D10G197000 Gossypium hirsutum HOM05D005005 ORTHO05D006178 3.3e-89 332.4 299 57.2
Gorai.011G220200 Gossypium raimondii HOM05D005005 ORTHO05D006178 3.3e-89 332.4 299 57.2
Migut.B01249 Erythranthe guttata HOM05D005005 ORTHO05D006178 5.7e-89 331.6 291 56.4
MSTRG.20501 Avicennia marina HOM05D005005 ORTHO05D006178 7.4e-89 331.3 296 56.8
Gohir.D06G184600 Gossypium hirsutum HOM05D005005 ORTHO05D006178 7.4e-89 331.3 296 56.8
Lalb_Chr03g0032191 Lupinus albus HOM05D005005 ORTHO05D006178 7.4e-89 331.3 283 56.9
arahy.Tifrunner.gnm1.ann1.HP7LLE Arachis hypogaea HOM05D005005 ORTHO05D006178 1.3e-88 330.5 284 57.0
ClCG08G002660 Citrullus lanatus HOM05D005005 ORTHO05D006178 1.3e-88 330.5 291 56.4
COL.COLO4_20731 Corchorus olitorius HOM05D005005 ORTHO05D006178 1.3e-88 330.5 289 56.7
GSVIVG01036640001 Vitis vinifera HOM05D005005 ORTHO05D006178 1.3e-88 330.5 298 56.7
ClCG08G010820 Citrullus lanatus HOM05D005005 ORTHO05D006178 1.7e-88 330.1 291 56.4
Duzib106G1278 Durio zibethinus HOM05D005005 ORTHO05D006178 1.7e-88 330.1 293 57.3
Lj7A493G34 Lonicera japonica HOM05D005005 ORTHO05D006178 1.7e-88 330.1 299 55.5
Glyma.13G192200 Glycine max HOM05D005005 ORTHO05D006178 2.8e-88 329.3 282 56.7
THA.LOC104799326 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 2.8e-88 329.3 300 56.7
CsaV3_6G035720 Cucumis sativus L. HOM05D005005 ORTHO05D006178 4.8e-88 328.6 283 57.2
Gohir.A06G174600 Gossypium hirsutum HOM05D005005 ORTHO05D006178 4.8e-88 328.6 296 56.8
FAN06G0520 Fragaria x ananassa HOM05D005005 ORTHO05D006178 6.3e-88 328.2 303 55.4
MELO3C011380.2 Cucumis melo HOM05D005005 ORTHO05D006178 1.4e-87 327.0 283 56.9
Oeu013069.1 Olea europaea HOM05D005005 ORTHO05D006178 1.8e-87 326.6 293 55.6
Potri.003G194300 Populus trichocarpa HOM05D005005 ORTHO05D006178 1.8e-87 326.6 298 56.0
Lj3g0014782 Lotus japonicus HOM05D005005 ORTHO05D006178 2.4e-87 326.2 284 56.7
Cc09_g07690 Coffea canephora HOM05D005005 ORTHO05D006178 3.1e-87 325.9 292 56.2
Potri.001G030900 Populus trichocarpa HOM05D005005 ORTHO05D006178 3.1e-87 325.9 298 55.7
VMungo1127G1151 Vigna mungo HOM05D005005 ORTHO05D006178 3.1e-87 325.9 282 56.4
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 4.1e-87 325.5 305 55.7
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 5.3e-87 325.1 291 55.3
Dinv32010 Davidia involucrata HOM05D005005 ORTHO05D006178 9.1e-87 324.3 291 55.7
MBI19_g20792_MAGBIO Magnolia biondii HOM05D005005 ORTHO05D006178 9.1e-87 324.3 309 55.3
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 9.1e-87 324.3 300 55.7
Actinidia07969 Actinidia chinensis HOM05D005005 ORTHO05D006178 1.2e-86 323.9 294 55.4
Manes.11G007250 Manihot esculenta HOM05D005005 ORTHO05D006178 1.2e-86 323.9 293 56.7
HanXRQChr01g0003701 Helianthus annuus HOM05D005005 ORTHO05D006178 1.5e-86 323.6 287 57.8
Sed0024277 Sechium edule HOM05D005005 ORTHO05D006178 1.5e-86 323.6 292 55.5
Ciclev10027527m.g Citrus clementina HOM05D005005 ORTHO05D006178 2.6e-86 322.8 286 60.8
Manes.04G156500 Manihot esculenta HOM05D005005 ORTHO05D006178 2.6e-86 322.8 291 55.7
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 2.6e-86 322.8 301 54.8
Nitab4.5_0002838g0130 Nicotiana tabacum HOM05D005005 ORTHO05D006178 4.5e-86 322.0 294 55.8
Phvul.011G201500 Phaseolus vulgaris HOM05D005005 ORTHO05D006178 4.5e-86 322.0 282 56.0
TPR.G8528 Trifolium pratense HOM05D005005 ORTHO05D006178 4.5e-86 322.0 284 55.6
CSS0003849 Camellia sinensis var. sinensis HOM05D005005 ORTHO05D006178 5.9e-86 321.6 291 55.0
CiPaw.14G009200 Carya illinoinensis HOM05D005005 ORTHO05D006178 5.9e-86 321.6 292 55.8
Lalb_Chr19g0132951 Lupinus albus HOM05D005005 ORTHO05D006178 5.9e-86 321.6 294 55.8
TWI63G1294 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 5.9e-86 321.6 294 55.4
unitig_61.g26369 Utricularia gibba HOM05D005005 ORTHO05D006178 5.9e-86 321.6 294 56.5
Peaxi162Scf00220g00417 Petunia axillaris HOM05D005005 ORTHO05D006178 1.0e-85 320.9 296 56.1
Glyma.15G230500 Glycine max HOM05D005005 ORTHO05D006178 1.3e-85 320.5 282 56.0
Actinidia06222 Actinidia chinensis HOM05D005005 ORTHO05D006178 1.7e-85 320.1 291 56.0
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 2.2e-85 319.7 294 54.8
PSO339G0382 Papaver somniferum HOM05D005005 ORTHO05D006178 2.2e-85 319.7 305 53.8
Lsat_1_v5_gn_1_117920 Lactuca sativa HOM05D005005 ORTHO05D006178 6.5e-85 318.2 297 54.9
Migut.N01858 Erythranthe guttata HOM05D005005 ORTHO05D006178 1.4e-84 317.0 287 54.7
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 1.4e-84 317.0 291 55.0
MSTRG.5076 Avicennia marina HOM05D005005 ORTHO05D006178 2.5e-84 316.2 296 55.4
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 2.5e-84 316.2 296 54.7
Oeu014630.2 Olea europaea HOM05D005005 ORTHO05D006178 2.5e-84 316.2 299 53.2
PGSC0003DMG403003285 Solanum tuberosum HOM05D005005 ORTHO05D006178 2.5e-84 316.2 297 55.6
Cfa010948 Carpinus fangiana HOM05D005005 ORTHO05D006178 3.2e-84 315.8 300 54.0
THA.LOC104826755 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 3.2e-84 315.8 301 54.5
Ca_23977_v3 Cicer arietinum L. HOM05D005005 ORTHO05D006178 4.2e-84 315.5 284 54.9
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 4.2e-84 315.5 301 54.2
Sopen01g040300 Solanum pennellii HOM05D005005 ORTHO05D006178 4.2e-84 315.5 304 53.3
PSO384G4770 Papaver somniferum HOM05D005005 ORTHO05D006178 5.5e-84 315.1 309 53.1
QL04p021121 Quercus lobata HOM05D005005 ORTHO05D006178 5.5e-84 315.1 295 53.6
QL93p0049_0022 Quercus lobata HOM05D005005 ORTHO05D006178 5.5e-84 315.1 295 53.6
CAN.G134.16 Capsicum annuum HOM05D005005 ORTHO05D006178 7.2e-84 314.7 296 54.7
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 7.2e-84 314.7 290 54.8
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 7.2e-84 314.7 300 54.3
Solyc01g096570.3 Solanum lycopersicum HOM05D005005 ORTHO05D006178 7.2e-84 314.7 304 53.3
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 1.2e-83 313.9 297 52.9
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 1.6e-83 313.5 299 54.2
Psat4g145120 Pisum sativum HOM05D005005 ORTHO05D006178 1.6e-83 313.5 290 54.1
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 2.1e-83 313.2 302 52.0
ECA248G3166 Erigeron canadensis HOM05D005005 ORTHO05D006178 2.1e-83 313.2 298 54.4
arahy.Tifrunner.gnm1.ann1.1L47SY Arachis hypogaea HOM05D005005 ORTHO05D006178 2.7e-83 312.8 321 50.5
TWI38G1285 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 2.7e-83 312.8 291 54.3
Aqoxy2G00413 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 1.0e-82 310.8 299 53.8
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 1.0e-82 310.8 289 53.6
SalBow6G1153 Salvia bowleyana HOM05D005005 ORTHO05D006178 1.0e-82 310.8 282 56.4
SalBow6G1292 Salvia bowleyana HOM05D005005 ORTHO05D006178 1.0e-82 310.8 282 56.4
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.8e-82 310.1 294 54.1
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 5.1e-82 308.5 309 53.1
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 5.1e-82 308.5 310 50.0
Sabra03G0145000 Salix brachista HOM05D005005 ORTHO05D006178 8.8e-82 307.8 327 50.5
Haze_02996 Corylus avellana HOM05D005005 ORTHO05D006178 1.5e-81 307.0 319 50.5
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 2.6e-81 306.2 291 55.7
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 3.3e-81 305.8 310 51.3
Zm00001eb129080 Zea mays HOM05D005005 ORTHO05D006178 9.7e-81 304.3 311 50.5
FAN03G0125 Fragaria x ananassa HOM05D005005 ORTHO05D006178 2.8e-80 302.8 367 45.2
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.1e-79 300.8 305 51.1
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.1e-79 300.8 304 52.0
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 1.4e-79 300.4 291 52.2
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 5.3e-79 298.5 289 51.2
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 5.3e-79 298.5 279 55.9
Sabra01G0022200 Salix brachista HOM05D005005 ORTHO05D006178 1.5e-78 297.0 348 46.3
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.6e-78 296.2 296 51.0
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 1.0e-77 294.3 304 51.6
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 1.7e-77 293.5 303 49.8
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 8.5e-77 291.2 296 49.7
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 7.4e-73 278.1 290 48.6
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 2.2e-72 276.6 273 52.0
Ciclev10001735m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.4e-71 273.9 200 66.0
Aqoxy1G00392 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 1.1e-68 264.2 256 53.9
SalBow6G0970 Salvia bowleyana HOM05D005005 ORTHO05D006178 4.2e-68 262.3 193 63.7
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 3.7e-64 249.2 190 62.6
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 5.9e-62 241.9 282 43.6
Haze_23255 Corylus avellana HOM05D005005 ORTHO05D006178 4.0e-58 229.2 280 45.7
CDE04G0220 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.8e-56 223.0 243 48.1
Psat2g140280 Pisum sativum HOM05D005005 ORTHO05D006178 2.4e-55 219.9 140 70.0
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 2.4e-55 219.9 137 70.8
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 7.0e-55 218.4 282 41.8
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 1.0e-53 214.5 140 68.6
SalBow5G3115 Salvia bowleyana HOM05D005005 ORTHO05D006178 1.3e-53 214.2 301 42.2
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 2.3e-53 213.4 215 49.8
Ciclev10027126m.g Citrus clementina HOM05D005005 ORTHO05D006178 3.0e-50 203.0 173 63.6
Nitab4.5_0004168g0100 Nicotiana tabacum HOM05D005005 ORTHO05D006178 5.4e-47 192.2 198 52.0
CDE02G0295 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 3.4e-41 172.9 199 45.7
TAR636G3532 Trochodendron aralioides HOM05D005005 ORTHO05D006178 4.9e-40 169.1 200 45.5
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 2.4e-39 166.8 116 66.4
Os11g0525900 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 2.0e-38 163.7 277 36.5
Psat1g148040 Pisum sativum HOM05D005005 ORTHO05D006178 2.0e-38 163.7 116 65.5
Psat4g190960 Pisum sativum HOM05D005005 ORTHO05D006178 4.7e-35 152.5 161 49.1
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 7.5e-33 145.2 207 39.6
CDE09G0004 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.7e-30 136.7 160 42.5
Oeu013075.1 Olea europaea HOM05D005005 ORTHO05D006178 4.4e-25 119.4 80 63.8
Psat2g140320 Pisum sativum HOM05D005005 ORTHO05D004780 6.4e-24 115.5 69 71.0
PRCOL_00004087 Prasinoderma coloniale HOM05D000406 ORTHO05D003425 3.1e-18 96.7 202 33.7
CDE02G4802 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.2e-17 94.7 106 37.7
CDE02G2432 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.6e-17 93.6 87 52.9
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 7.1e-15 85.5 223 24.7
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 2.7e-14 83.6 205 25.9
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 4.6e-14 82.8 211 25.6
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 6.0e-14 82.4 210 23.3
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 1.3e-13 81.3 194 24.2
CDE09G0976 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 5.1e-13 79.3 166 33.1
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 2.5e-12 77.0 210 24.3
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 4.3e-12 76.3 205 22.4
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 1.3e-11 74.7 204 24.5
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 1.6e-11 74.3 214 24.3
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 2.1e-11 73.9 216 22.7
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 6.2e-11 72.4 208 22.1
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 6.2e-11 72.4 208 24.0
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 8.1e-11 72.0 203 23.6
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 1.1e-10 71.6 203 23.2
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 1.4e-10 71.2 219 22.8
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 2.4e-10 70.5 204 23.5
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 2.4e-10 70.5 207 23.7
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 2.4e-10 70.5 220 20.5
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 3.1e-10 70.1 203 23.2
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 6.9e-10 68.9 203 22.2
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 6.9e-10 68.9 199 22.1
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 9.0e-10 68.6 206 23.3
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 2.0e-09 67.4 204 21.6
CDE02G0171 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 7.6e-09 65.5 107 32.7
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 9.9e-09 65.1 203 22.2
QL01p016028 Quercus lobata HOM05D005005 ORTHO05D006178 1.6e-06 57.8 80 42.5


User provided reference genes

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