Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 0.0e+00 1329.3 674 100.0
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 6.0e-262 907.5 712 67.0
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 4.6e-254 881.3 714 64.6
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 8.8e-245 850.5 721 62.0
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 1.4e-242 843.2 719 61.1
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 5.3e-242 841.3 729 60.5
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 2.0e-241 839.3 706 61.8
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 3.4e-241 838.6 726 61.0
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 5.5e-239 831.2 729 61.7
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 9.4e-239 830.5 725 61.5
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 6.5e-232 807.7 707 60.4
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 4.7e-230 801.6 717 60.1
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 1.5e-228 796.6 727 58.9
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 9.7e-228 793.9 703 60.2
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.2e-227 792.7 727 58.7
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 6.3e-227 791.2 716 59.2
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 2.4e-226 789.3 717 59.0
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 9.1e-226 787.3 718 59.2
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 1.6e-225 786.6 724 58.8
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 2.9e-224 782.3 731 58.3
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 1.5e-223 780.0 724 57.9
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 2.5e-223 779.2 702 58.5
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.1e-222 776.2 716 57.4
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 8.8e-221 770.8 713 57.8
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.2e-220 770.4 719 57.4
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 3.7e-219 765.4 702 58.1
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.1e-218 763.8 719 57.0
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 2.4e-218 762.7 720 57.2
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 9.1e-218 760.8 699 58.2
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 9.1e-218 760.8 714 56.3
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.2e-217 760.4 694 58.1
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 4.5e-217 758.4 719 56.7
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 1.0e-216 757.3 712 56.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.3e-216 756.9 720 56.8
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 2.2e-216 756.1 702 57.3
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 2.2e-216 756.1 733 56.3
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 2.9e-216 755.7 711 57.5
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 3.8e-216 755.4 702 57.4
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 8.5e-216 754.2 712 57.4
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 8.5e-216 754.2 705 57.0
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.9e-215 753.1 699 57.5
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 7.2e-215 751.1 713 56.4
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 9.4e-215 750.7 728 55.6
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 5.2e-213 745.0 750 54.0
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 2.6e-212 742.7 716 55.7
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.7e-211 740.0 713 56.1
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.7e-211 740.0 714 55.5
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 1.1e-210 737.3 723 54.5
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 2.4e-210 736.1 710 54.8
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 2.5e-207 726.1 685 56.9
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 5.7e-204 714.9 693 55.6
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.3e-203 713.8 727 55.6
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.3e-203 713.8 695 56.4
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 3.7e-203 712.2 723 55.3
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 1.1e-202 710.7 726 55.0
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.1e-202 710.7 710 54.9
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 1.4e-202 710.3 722 54.7
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.8e-202 709.9 710 53.5
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 1.8e-202 709.9 696 54.2
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 2.0e-201 706.4 727 54.9
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.3e-200 703.7 723 53.5
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.7e-200 703.4 724 54.1
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 3.8e-200 702.2 671 56.0
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 3.6e-198 695.7 733 53.6
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 3.0e-197 692.6 625 59.2
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 5.2e-197 691.8 750 50.5
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 6.8e-197 691.4 706 52.5
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 6.8e-197 691.4 735 53.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 8.9e-197 691.0 739 53.2
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.5e-196 690.3 692 54.3
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 1.7e-195 686.8 634 58.7
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.7e-195 686.8 692 54.6
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.9e-194 683.3 731 52.4
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 5.4e-194 681.8 678 54.1
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 5.4e-194 681.8 727 53.2
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.2e-193 680.6 718 52.2
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 4.6e-193 678.7 721 52.6
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 6.0e-193 678.3 718 52.4
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 6.0e-193 678.3 713 52.6
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 7.8e-193 677.9 700 53.4
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 3.9e-192 675.6 723 52.1
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 2.5e-191 672.9 708 52.4
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 3.3e-191 672.5 724 53.6
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 2.3e-189 666.4 724 53.7
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 4.0e-189 665.6 724 51.8
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 4.0e-189 665.6 724 51.1
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 2.0e-188 663.3 724 51.7
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 2.0e-188 663.3 724 52.8
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 4.9e-187 658.7 696 50.4
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 3.5e-185 652.5 765 49.8
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 8.6e-184 647.9 732 51.0
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 2.5e-183 646.4 725 52.6
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 5.6e-183 645.2 628 56.2
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 1.6e-182 643.7 732 51.0
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.6e-182 643.7 709 50.4
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 5.4e-178 628.6 669 51.7
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 1.6e-177 627.1 726 49.6
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.7e-177 626.3 709 47.8
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 6.0e-177 625.2 531 63.7
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.3e-176 624.0 630 54.1
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 2.5e-175 619.8 618 53.1
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 4.3e-175 619.0 693 49.8
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 4.0e-173 612.5 600 56.0
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.5e-172 610.5 724 48.6
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.5e-172 610.5 701 48.2
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 3.5e-169 599.4 793 46.7
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 7.8e-169 598.2 668 49.1
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 5.6e-167 592.0 627 54.5
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.4e-165 586.6 688 47.4
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 4.6e-161 572.4 622 51.3
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 1.3e-158 564.3 689 46.4
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 2.6e-148 530.0 766 42.4
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 3.9e-144 516.2 491 56.4
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 2.4e-141 506.9 634 45.4
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.0e-141 506.1 665 44.5
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.8e-123 446.4 764 39.4
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.9e-122 444.1 817 35.5
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.8e-120 437.6 763 37.7
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 3.9e-120 436.4 727 38.9
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 1.5e-119 434.5 704 38.9
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 2.3e-88 330.9 513 40.0
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 5.4e-85 319.7 663 32.6
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 9.2e-85 318.9 508 39.0
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.5e-76 290.4 465 37.4
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.6e-60 238.4 667 28.0
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 8.6e-59 232.6 433 35.3
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 2.4e-48 198.0 222 46.8
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 9.9e-47 192.6 221 48.4
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.2e-44 185.7 127 71.7
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 1.9e-42 178.3 300 37.0
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 4.0e-40 170.6 210 45.2
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.3e-40 170.2 151 57.0
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.9e-38 164.5 172 52.9
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 8.4e-38 162.9 96 72.9
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 2.7e-36 157.9 98 78.6
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.6e-31 141.4 95 69.5
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.8e-27 128.6 130 53.1
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 8.7e-27 126.3 109 56.0
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 2.5e-21 108.2 97 56.7
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 2.5e-18 98.2 247 34.4
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 6.9e-16 90.1 74 58.1
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 3.0e-11 74.7 273 30.4
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 1.3e-09 69.3 500 25.6
Migut.D02327 Erythranthe guttata HOM05D001312 ORTHO05D001832 5.9e-07 60.5 180 30.0
Sopen07g027560 Solanum pennellii HOM05D001439 ORTHO05D002726 1.0e-06 59.7 70 42.9
HanXRQChr04g0117141 Helianthus annuus HOM05D001439 ORTHO05D002726 1.3e-06 59.3 86 39.5
Lsat_1_v5_gn_7_22781 Lactuca sativa HOM05D001439 ORTHO05D002726 1.3e-06 59.3 86 40.7
vmacro15932 Vaccinium macrocarpon HOM05D001439 ORTHO05D002726 1.3e-06 59.3 284 25.7
Mapoly0005s0159 Marchantia polymorpha HOM05D001439 ORTHO05D002726 1.7e-06 58.9 73 46.6
ECA236G3003 Erigeron canadensis HOM05D001455 ORTHO05D001587 2.2e-06 58.5 70 44.3
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 5.0e-06 57.4 217 28.1
unitig_37.g12875 Utricularia gibba HOM05D001439 ORTHO05D002726 6.5e-06 57.0 86 40.7


User provided reference genes

Program Settings