Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 1.1e-188 663.3 370 100.0
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 1.2e-171 606.7 370 91.1
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 1.8e-159 566.2 370 86.5
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 4.5e-158 561.6 370 85.4
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 9.9e-158 560.5 370 83.0
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 6.4e-157 557.8 370 83.2
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 6.4e-157 557.8 370 85.1
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 9.3e-156 553.9 370 82.2
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 9.3e-156 553.9 370 82.4
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 1.6e-155 553.1 370 84.1
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 2.1e-155 552.7 370 84.6
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 3.5e-155 552.0 370 83.8
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 7.9e-155 550.8 370 84.3
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 1.8e-154 549.7 370 81.9
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 3.3e-153 545.4 370 83.5
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 9.6e-153 543.9 370 81.6
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 1.6e-152 543.1 370 81.6
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 3.7e-152 542.0 370 82.4
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 6.2e-152 541.2 370 84.1
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.8e-151 539.7 370 82.7
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 1.8e-151 539.7 370 81.4
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 3.1e-151 538.9 370 81.4
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 5.3e-151 538.1 370 81.4
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 5.3e-151 538.1 370 81.4
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 9.0e-151 537.3 370 81.4
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 2.0e-150 536.2 371 82.7
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 2.6e-150 535.8 370 81.6
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.6e-150 534.3 370 80.5
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 7.6e-150 534.3 370 80.5
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 1.0e-149 533.9 370 82.4
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 8.4e-149 530.8 370 80.0
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 2.5e-148 529.3 414 74.9
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 3.2e-148 528.9 370 80.0
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 9.3e-148 527.3 370 80.5
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 2.1e-147 526.2 370 80.0
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 2.1e-147 526.2 370 79.5
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 6.0e-147 524.6 370 79.7
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 7.9e-147 524.2 370 79.7
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 1.0e-146 523.9 370 79.2
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 2.5e-145 519.2 370 76.2
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 3.3e-145 518.8 370 77.6
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 4.3e-145 518.5 373 78.8
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 5.7e-145 518.1 354 80.8
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 5.7e-145 518.1 370 78.1
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 7.4e-145 517.7 370 75.9
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 1.3e-144 516.9 370 78.6
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 1.6e-144 516.5 370 78.1
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 6.2e-144 514.6 370 78.1
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 8.2e-144 514.2 370 79.5
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 4.5e-142 508.4 371 79.0
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 5.8e-142 508.1 370 72.4
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 2.9e-141 505.8 370 71.9
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 3.8e-141 505.4 370 71.9
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 5.0e-141 505.0 380 77.1
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 8.4e-141 504.2 371 72.5
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 8.4e-141 504.2 370 71.9
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 2.5e-140 502.7 370 71.1
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 3.5e-139 498.8 373 71.8
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 7.9e-139 497.7 370 77.8
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 1.0e-138 497.3 393 73.3
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 8.7e-138 494.2 370 68.1
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.5e-137 493.4 370 75.9
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 3.3e-137 492.3 370 77.3
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 3.3e-137 492.3 370 75.4
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 7.4e-137 491.1 370 73.8
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 9.7e-137 490.7 371 70.6
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 2.8e-136 489.2 371 70.6
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 3.7e-136 488.8 370 71.4
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 3.7e-136 488.8 370 71.1
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 1.8e-135 486.5 371 69.8
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 1.8e-135 486.5 371 69.8
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 3.1e-135 485.7 376 70.2
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 6.9e-135 484.6 371 67.4
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 9.0e-135 484.2 370 75.9
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 1.3e-133 480.3 370 76.5
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 2.2e-133 479.6 373 76.1
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 3.8e-133 478.8 373 76.1
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 1.1e-132 477.2 370 75.4
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 1.9e-132 476.5 370 75.4
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 9.4e-132 474.2 387 71.3
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 2.5e-129 466.1 370 73.2
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 7.4e-129 464.5 355 70.1
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 1.8e-127 459.9 371 71.4
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 2.4e-127 459.5 371 72.0
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 2.6e-126 456.1 370 73.2
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 2.9e-125 452.6 385 69.6
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 3.2e-124 449.1 370 71.6
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 9.4e-124 447.6 402 67.2
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 1.2e-123 447.2 380 70.5
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 8.8e-122 441.0 334 71.6
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 2.6e-121 439.5 371 69.5
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 9.7e-121 437.6 380 64.2
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.1e-119 434.1 370 69.7
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 3.1e-119 432.6 377 70.3
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 2.5e-116 422.9 370 69.7
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 7.2e-116 421.4 370 62.7
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 5.2e-106 388.7 346 69.1
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 7.7e-102 374.8 370 54.6
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 6.8e-98 361.7 358 58.4
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.5e-97 360.5 329 69.9
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 5.6e-92 342.0 246 70.7
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 5.7e-89 332.0 373 55.2
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 1.1e-84 317.8 370 50.0
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 5.2e-82 308.9 265 72.8
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 9.2e-79 298.1 386 47.4
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 6.0e-78 295.4 303 56.4
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 6.6e-77 292.0 377 47.2
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 1.9e-76 290.4 294 55.4
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 6.4e-72 275.4 390 53.8
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 2.1e-67 260.4 212 62.3
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 6.2e-67 258.8 197 65.5
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 1.9e-60 237.3 354 44.1
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 4.4e-57 226.1 292 48.3
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 8.7e-53 211.8 205 59.5
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 1.3e-51 208.0 122 86.1
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 1.6e-43 181.0 125 74.4
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 1.8e-42 177.6 519 31.4
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 2.4e-42 177.2 394 32.2
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 6.9e-42 175.6 166 57.2
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 3.3e-36 156.8 129 72.1
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 2.1e-35 154.1 137 60.6
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 3.7e-35 153.3 379 32.2
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 1.8e-34 151.0 92 80.4
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 4.0e-34 149.8 141 58.2
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 4.6e-30 136.3 368 29.1
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 7.4e-28 129.0 151 49.7
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 7.4e-28 129.0 125 63.2
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 2.8e-27 127.1 104 64.4
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 6.3e-27 125.9 123 54.5
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 6.3e-27 125.9 111 63.1
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 5.3e-26 122.9 71 83.1
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.2e-24 117.5 88 69.3
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 3.2e-23 113.6 136 44.9
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 1.0e-21 108.6 130 63.8
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 1.3e-16 91.7 121 45.5
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 1.3e-16 91.7 47 83.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 1.6e-14 84.7 80 62.5
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 2.7e-14 84.0 47 72.3
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 1.3e-11 75.1 46 82.6
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 1.8e-10 71.2 51 72.5
FAN05G0601 Fragaria x ananassa HOM05D004899 ORTHO05D006580 5.3e-10 69.7 75 46.7
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 2.0e-09 67.8 38 84.2
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 2.6e-09 67.4 35 91.4
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 2.6e-09 67.4 39 74.4
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 1.0e-08 65.5 44 75.0


User provided reference genes

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