Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 2.4e-96 355.9 239 100.0
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 1.1e-72 277.3 241 83.8
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 2.1e-68 263.1 239 81.6
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 8.0e-68 261.2 239 80.3
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 5.2e-67 258.5 239 82.4
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 3.4e-66 255.8 239 79.9
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 5.8e-66 255.0 240 80.4
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 5.8e-66 255.0 235 82.1
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 7.5e-66 254.6 238 79.8
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 2.2e-65 253.1 239 80.3
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 3.7e-65 252.3 239 78.7
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 8.3e-65 251.1 239 79.9
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.4e-64 250.4 239 79.9
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 4.1e-64 248.8 239 78.7
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 5.4e-64 248.4 239 79.5
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 5.4e-64 248.4 255 76.5
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.0e-64 248.1 241 79.3
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 1.6e-63 246.9 251 68.5
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 3.5e-63 245.7 239 75.3
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 7.8e-63 244.6 240 77.1
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 7.8e-63 244.6 239 77.8
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 7.8e-63 244.6 239 75.3
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 1.3e-62 243.8 239 75.3
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 1.3e-62 243.8 241 80.1
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 1.7e-62 243.4 239 79.9
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 2.3e-62 243.0 239 79.1
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 3.9e-62 242.3 239 77.8
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 5.0e-62 241.9 239 75.7
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 6.6e-62 241.5 239 77.8
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 7.3e-61 238.0 229 80.3
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 9.5e-61 237.7 239 76.6
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 9.5e-61 237.7 241 76.8
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.2e-60 237.3 239 78.2
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.8e-60 236.1 243 77.4
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 4.7e-60 235.3 240 74.6
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 1.4e-59 233.8 240 75.4
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 1.8e-59 233.4 244 76.6
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 3.1e-59 232.6 239 75.3
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 6.8e-59 231.5 241 76.3
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 1.2e-58 230.7 238 76.1
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 2.6e-58 229.6 263 59.3
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 3.4e-58 229.2 237 76.8
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 5.8e-58 228.4 236 77.5
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 9.9e-58 227.6 212 82.1
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 1.3e-57 227.3 239 76.2
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-57 227.3 239 76.2
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.3e-57 227.3 258 53.5
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 2.2e-57 226.5 240 75.0
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.7e-57 225.7 239 76.2
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 6.4e-57 224.9 239 75.3
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 6.4e-57 224.9 232 77.6
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 1.4e-56 223.8 239 75.7
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 1.4e-56 223.8 208 81.2
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.9e-56 223.4 239 75.7
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 1.9e-56 223.4 191 89.5
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.1e-56 221.5 205 84.4
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 1.2e-55 220.7 245 72.7
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.6e-55 220.3 200 85.5
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 1.6e-55 220.3 239 74.5
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 1.6e-55 220.3 245 73.9
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 2.1e-55 219.9 244 73.0
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 2.7e-55 219.5 242 75.6
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 2.7e-55 219.5 240 73.3
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 6.0e-55 218.4 244 74.2
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 1.0e-54 217.6 186 86.6
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 2.3e-54 216.5 200 83.0
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 5.1e-54 215.3 240 71.7
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 8.6e-54 214.5 160 68.1
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 8.6e-54 214.5 206 82.0
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 8.6e-54 214.5 193 86.0
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 1.1e-53 214.2 160 71.9
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 1.1e-53 214.2 204 83.3
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 4.3e-53 212.2 191 85.3
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 4.3e-53 212.2 197 83.8
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 7.3e-53 211.5 239 73.6
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 7.3e-53 211.5 243 72.0
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 9.5e-53 211.1 239 72.4
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.1e-52 209.9 258 50.8
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 2.8e-52 209.5 243 72.0
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 3.6e-52 209.1 243 71.6
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 4.7e-52 208.8 243 73.3
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-51 207.6 200 67.5
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 1.1e-51 207.6 198 82.3
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 1.8e-51 206.8 212 76.9
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 3.1e-51 206.1 239 61.9
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.2e-50 204.1 214 77.1
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 2.0e-50 203.4 242 71.5
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 7.6e-50 201.4 197 81.2
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 1.3e-49 200.7 240 72.1
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 1.7e-49 200.3 242 70.2
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 4.9e-49 198.7 246 69.5
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 4.9e-49 198.7 246 69.5
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 4.9e-49 198.7 204 78.4
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 1.1e-48 197.6 246 69.5
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 1.9e-48 196.8 244 69.7
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 3.2e-48 196.1 245 69.4
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 3.2e-48 196.1 242 69.0
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 3.2e-48 196.1 245 69.0
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 1.2e-47 194.1 242 69.8
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.1e-47 193.4 243 71.6
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 2.7e-47 193.0 242 68.6
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-47 193.0 131 75.6
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 4.6e-47 192.2 211 53.6
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 4.6e-47 192.2 211 53.6
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.6e-47 192.2 131 75.6
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.6e-47 192.2 131 75.6
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 1.3e-46 190.7 241 69.7
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 3.0e-46 189.5 120 76.7
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.0e-46 189.5 131 74.0
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 8.7e-46 188.0 131 74.0
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 1.9e-45 186.8 205 76.1
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.9e-45 186.8 131 73.3
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 7.3e-45 184.9 133 72.9
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 9.6e-45 184.5 242 67.8
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.8e-44 183.0 239 50.6
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.2e-42 177.6 239 50.6
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.4e-40 168.7 157 89.8
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 7.1e-40 168.3 158 88.0
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 9.3e-40 167.9 241 66.8
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.6e-39 167.2 255 63.9
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 1.6e-39 167.2 166 84.3
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 3.5e-39 166.0 205 68.8
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 5.8e-34 148.7 207 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 9.9e-34 147.9 138 56.5
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.7e-33 147.1 77 92.2
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 1.9e-32 143.7 106 68.9
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 1.9e-32 143.7 156 81.4
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 3.3e-21 106.3 64 76.6
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 6.7e-14 82.0 82 57.3
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 5.7e-13 79.0 116 78.4
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 4.8e-12 75.9 216 37.0


User provided reference genes

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