Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 9.7e-187 656.8 353 100.0
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 2.8e-101 372.9 466 54.9
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 5.7e-78 295.4 472 43.2
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 5.7e-78 295.4 466 43.8
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 1.1e-76 291.2 467 44.8
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 1.1e-76 291.2 467 44.8
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 9.1e-76 288.1 468 42.5
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 2.6e-75 286.6 491 43.2
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 1.7e-74 283.9 473 42.3
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 3.8e-74 282.7 467 42.4
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 2.5e-73 280.0 467 41.8
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 3.2e-73 279.6 467 41.5
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 4.2e-73 279.3 467 41.5
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 2.7e-72 276.6 478 42.7
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 3.6e-72 276.2 469 42.4
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 6.1e-72 275.4 467 41.8
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 7.9e-72 275.0 466 41.6
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.8e-71 273.9 470 43.0
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 2.3e-71 273.5 404 44.1
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.0e-71 273.1 474 40.9
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.0e-71 273.1 474 40.9
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 8.8e-71 271.6 469 40.5
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.5e-70 270.8 466 41.2
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 5.7e-70 268.9 466 41.0
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 7.4e-70 268.5 463 41.5
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 7.4e-70 268.5 469 42.6
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 1.3e-69 267.7 466 40.6
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 1.3e-69 267.7 467 40.0
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 1.7e-69 267.3 466 40.6
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.7e-69 267.3 469 42.6
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 3.7e-69 266.2 469 42.4
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 6.3e-69 265.4 527 38.3
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 8.2e-69 265.0 466 41.4
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 8.2e-69 265.0 467 39.8
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 8.2e-69 265.0 466 41.0
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 1.1e-68 264.6 471 40.8
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 5.3e-68 262.3 466 41.4
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 5.3e-68 262.3 470 40.2
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 1.6e-67 260.8 466 39.9
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 3.5e-67 259.6 467 40.7
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 4.5e-67 259.2 466 39.9
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 1.0e-66 258.1 474 39.5
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-66 257.7 467 38.8
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.3e-66 257.7 467 41.5
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.3e-66 257.7 441 41.5
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.3e-66 257.7 473 38.9
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 2.2e-66 256.9 466 40.8
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 2.9e-66 256.5 467 38.5
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.9e-66 256.5 480 40.4
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 5.0e-66 255.8 400 42.8
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 5.0e-66 255.8 491 38.7
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 8.5e-66 255.0 475 42.3
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 1.1e-65 254.6 467 40.5
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 1.5e-65 254.2 466 39.3
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.2e-65 253.1 467 38.3
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 7.2e-65 251.9 472 38.1
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 9.4e-65 251.5 470 39.6
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 9.4e-65 251.5 468 39.3
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 1.2e-64 251.1 477 42.8
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.6e-64 250.8 467 40.5
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 2.1e-64 250.4 466 38.6
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 2.1e-64 250.4 467 39.6
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 2.7e-64 250.0 467 39.0
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 2.7e-64 250.0 461 39.9
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 4.7e-64 249.2 343 47.2
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 4.7e-64 249.2 466 39.3
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 4.7e-64 249.2 472 40.0
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 4.7e-64 249.2 484 38.8
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 6.1e-64 248.8 479 38.8
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 1.4e-63 247.7 482 39.2
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 2.3e-63 246.9 470 40.0
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 4.0e-63 246.1 466 38.6
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 4.0e-63 246.1 467 38.8
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 1.2e-62 244.6 474 39.2
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 1.5e-62 244.2 467 40.3
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.6e-62 243.4 531 36.5
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 2.6e-62 243.4 517 37.1
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 3.3e-62 243.0 467 41.8
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 3.3e-62 243.0 476 37.8
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 4.4e-62 242.7 473 41.4
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 4.4e-62 242.7 473 41.4
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 4.4e-62 242.7 477 42.3
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.3e-61 241.1 343 45.5
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 1.3e-61 241.1 343 45.2
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 6.3e-61 238.8 398 44.5
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 6.3e-61 238.8 491 39.1
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 6.3e-61 238.8 467 37.5
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 8.2e-61 238.4 376 42.6
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 1.1e-60 238.0 466 40.1
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.4e-60 237.7 488 38.1
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 4.1e-60 236.1 379 42.2
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 4.1e-60 236.1 457 38.3
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 5.3e-60 235.7 399 42.9
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 7.0e-60 235.3 467 41.1
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 9.1e-60 235.0 481 38.7
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 2.0e-59 233.8 467 37.7
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 3.5e-59 233.0 467 41.3
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 1.0e-58 231.5 404 39.6
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 1.3e-58 231.1 343 42.9
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.7e-58 230.7 474 39.0
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 6.5e-58 228.8 472 37.1
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 6.5e-58 228.8 477 39.0
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 8.5e-58 228.4 479 38.6
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.5e-57 227.6 501 36.5
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 1.9e-57 227.3 465 37.6
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 1.9e-57 227.3 481 36.0
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 1.6e-56 224.2 331 45.0
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 2.7e-56 223.4 479 38.8
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 2.7e-56 223.4 343 42.6
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 1.0e-55 221.5 466 39.9
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.8e-55 220.7 466 39.5
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.8e-55 220.7 470 40.2
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 9.8e-54 214.9 466 39.3
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 1.3e-53 214.5 468 40.6
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 2.2e-53 213.8 440 37.7
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 6.3e-53 212.2 343 42.9
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 8.3e-53 211.8 467 36.6
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 4.1e-52 209.5 343 42.3
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 9.1e-52 208.4 474 36.7
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 1.7e-50 204.1 411 37.0
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 2.3e-50 203.8 469 35.0
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 2.3e-50 203.8 332 42.8
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 7.2e-49 198.7 342 40.4
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.6e-48 197.6 357 40.1
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 2.8e-48 196.8 470 33.0
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 4.7e-48 196.1 308 44.5
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 8.0e-48 195.3 464 37.7
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 1.0e-47 194.9 319 42.3
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.8e-46 188.3 364 38.7
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.7e-45 187.6 229 52.0
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 1.8e-44 184.1 471 35.0
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.4e-44 182.6 252 48.0
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 1.6e-43 181.0 495 34.3
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 3.5e-43 179.9 334 39.5
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 7.8e-43 178.7 274 43.4
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 3.8e-42 176.4 364 36.0
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 1.6e-40 171.0 279 41.9
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.4e-39 167.9 309 41.4
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.2e-38 164.9 426 33.3
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 2.0e-38 164.1 328 36.9
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 8.3e-37 158.7 236 44.9
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 1.1e-36 158.3 467 32.5
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.4e-36 157.9 313 39.9
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 1.8e-36 157.5 223 43.5
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.0e-34 150.2 111 69.4
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 9.5e-25 118.6 277 33.6
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.2e-24 118.2 166 46.4
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 1.2e-22 111.7 113 53.1
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 1.1e-20 105.1 255 31.0
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 9.2e-20 102.1 335 28.1
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.5e-19 100.1 216 37.0
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 4.0e-15 86.7 100 50.0
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 5.2e-15 86.3 100 50.0
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 3.3e-09 67.0 217 32.3
Oeu061378.1 Olea europaea HOM05D004480 ORTHO05D005546 1.6e-08 64.7 194 29.4
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 3.4e-06 57.0 240 26.7
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 7.6e-06 55.8 75 45.3


User provided reference genes

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