Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10019906m.g Citrus clementina HOM05D004013 ORTHO05D004710 3.1e-284 981.1 487 100.0
Atru.chr3.2025 Acer truncatum HOM05D004013 ORTHO05D004710 3.6e-232 808.1 487 80.5
Thecc.01G234100 Theobroma cacao HOM05D004013 ORTHO05D004710 4.7e-208 728.0 489 74.0
MD00G1055200 Malus domestica HOM05D004013 ORTHO05D004710 1.1e-207 726.9 489 73.4
Prupe.2G000200 Prunus persica HOM05D004013 ORTHO05D004710 6.8e-207 724.2 489 73.8
Cfa000589 Carpinus fangiana HOM05D004013 ORTHO05D004710 1.2e-206 723.4 501 72.5
QL05p046231 Quercus lobata HOM05D004013 ORTHO05D004710 4.4e-206 721.5 500 72.0
Duzib147G1378 Durio zibethinus HOM05D004013 ORTHO05D004710 2.4e-204 715.7 492 73.2
Gohir.A12G002200 Gossypium hirsutum HOM05D004013 ORTHO05D004710 1.6e-203 713.0 492 72.4
MD07G1000400 Malus domestica HOM05D004013 ORTHO05D004710 7.8e-203 710.7 489 72.0
Gohir.D12G001900 Gossypium hirsutum HOM05D004013 ORTHO05D004710 5.1e-202 708.0 492 71.5
Duzib264G0158 Durio zibethinus HOM05D004013 ORTHO05D004710 1.5e-201 706.4 489 72.2
COL.COLO4_06916 Corchorus olitorius HOM05D004013 ORTHO05D004710 3.3e-201 705.3 498 71.7
Gorai.008G001300 Gossypium raimondii HOM05D004013 ORTHO05D004710 2.1e-200 702.6 492 70.9
Dinv28066 Davidia involucrata HOM05D004013 ORTHO05D004710 2.0e-198 696.0 489 70.8
Potri.017G000500 Populus trichocarpa HOM05D004013 ORTHO05D004710 1.7e-197 693.0 489 71.0
GSVIVG01003913001 Vitis vinifera HOM05D004013 ORTHO05D004710 2.4e-196 689.1 494 71.7
CiPaw.10G057600 Carya illinoinensis HOM05D004013 ORTHO05D004710 7.8e-195 684.1 489 69.7
Potri.007G147100 Populus trichocarpa HOM05D004013 ORTHO05D004710 5.6e-193 677.9 489 70.1
VMungo1383G0353 Vigna mungo HOM05D004013 ORTHO05D004710 4.8e-192 674.9 490 69.8
TWI63G0479 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 2.0e-190 669.5 492 68.9
Phvul.008G048900 Phaseolus vulgaris HOM05D004013 ORTHO05D004710 1.9e-188 662.9 490 69.2
TWI15G0551 Tripterygium wilfordii HOM05D004013 ORTHO05D004710 4.2e-188 661.8 492 68.3
Glyma.09G244800 Glycine max HOM05D004013 ORTHO05D004710 1.2e-187 660.2 490 68.8
Lj1g0014615 Lotus japonicus HOM05D004013 ORTHO05D004710 3.0e-186 655.6 489 68.1
Hma1.2p1_0940F.1_g239620 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 5.1e-186 654.8 489 66.1
CSS0003826 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 8.7e-186 654.1 491 67.0
CSS0048139 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 8.7e-186 654.1 491 67.0
TAR633G1686 Trochodendron aralioides HOM05D004013 ORTHO05D004710 8.7e-186 654.1 495 67.3
MELO3C008520.2 Cucumis melo HOM05D004013 ORTHO05D004710 4.3e-185 651.7 484 69.0
Sed0016347 Sechium edule HOM05D004013 ORTHO05D004710 4.3e-185 651.7 481 69.6
Ca_08048_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.4e-183 646.0 491 67.4
Ca_08054_v3 Cicer arietinum L. HOM05D004013 ORTHO05D004710 2.4e-183 646.0 491 67.4
Manes.01G009000 Manihot esculenta HOM05D004013 ORTHO05D004710 2.4e-183 646.0 399 78.2
CANSAT78G0639 Cannabis sativa HOM05D004013 ORTHO05D004710 3.1e-183 645.6 441 70.5
Eucgr.K03157 Eucalyptus grandis HOM05D004013 ORTHO05D004710 3.1e-183 645.6 489 66.9
CsaV3_2G011360 Cucumis sativus L. HOM05D004013 ORTHO05D004710 6.9e-183 644.4 484 68.6
TAR365G0341 Trochodendron aralioides HOM05D004013 ORTHO05D004710 6.9e-183 644.4 491 67.2
vmacro09116 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 2.4e-180 636.0 489 64.8
CiPaw.09G068100 Carya illinoinensis HOM05D004013 ORTHO05D004710 4.2e-180 635.2 399 76.2
Medtr7g081230 Medicago truncatula HOM05D004013 ORTHO05D004710 2.7e-179 632.5 489 65.4
Haze_06261 Corylus avellana HOM05D004013 ORTHO05D004710 1.8e-178 629.8 741 49.3
TPR.G29111 Trifolium pratense HOM05D004013 ORTHO05D004710 2.3e-178 629.4 490 65.1
Lalb_Chr01g0021691 Lupinus albus HOM05D004013 ORTHO05D004710 9.6e-177 624.0 460 67.8
arahy.Tifrunner.gnm1.ann1.M4STP7 Arachis hypogaea HOM05D004013 ORTHO05D004710 2.8e-176 622.5 489 64.6
Glyma.18G248400 Glycine max HOM05D004013 ORTHO05D004710 5.3e-175 618.2 490 65.7
arahy.Tifrunner.gnm1.ann1.LVD0DC Arachis hypogaea HOM05D004013 ORTHO05D004710 6.9e-175 617.8 489 65.0
Cpa.g.sc9.235 Carica papaya HOM05D004013 ORTHO05D004710 4.5e-174 615.1 404 73.5
Nn1g09391 Nelumbo nucifera HOM05D004013 ORTHO05D004710 6.0e-171 604.7 438 68.9
PSO675G0050 Papaver somniferum HOM05D004013 ORTHO05D004710 7.9e-171 604.4 459 65.8
arahy.Tifrunner.gnm1.ann1.ERJ0Z2 Arachis hypogaea HOM05D004013 ORTHO05D004710 1.0e-170 604.0 500 63.2
PSO732G0206 Papaver somniferum HOM05D004013 ORTHO05D004710 3.9e-170 602.1 459 66.0
Lalb_Chr03g0040611 Lupinus albus HOM05D004013 ORTHO05D004710 8.7e-170 600.9 459 66.0
Rhsim09G0091900 Rhododendron simsii HOM05D004013 ORTHO05D004710 8.7e-170 600.9 557 58.2
Lj3C865T7 Lonicera japonica HOM05D004013 ORTHO05D004710 7.4e-169 597.8 474 64.1
Lj6A740G51 Lonicera japonica HOM05D004013 ORTHO05D004710 2.1e-168 596.3 496 63.1
ECA232G0201 Erigeron canadensis HOM05D004013 ORTHO05D004710 8.2e-168 594.3 473 63.8
DCAR_023584 Daucus carota HOM05D004013 ORTHO05D004710 1.4e-167 593.6 489 60.7
ECA233G0032 Erigeron canadensis HOM05D004013 ORTHO05D004710 9.0e-167 590.9 473 63.4
Psat0s3112g0040 Pisum sativum HOM05D004013 ORTHO05D004710 2.0e-166 589.7 489 61.8
arahy.Tifrunner.gnm1.ann1.AL59ZJ Arachis hypogaea HOM05D004013 ORTHO05D004710 1.4e-164 583.6 489 62.6
PGR142G2472 Punica granatum HOM05D004013 ORTHO05D004710 2.8e-160 569.3 445 64.5
ATR0706G248 Amborella trichopoda HOM05D004013 ORTHO05D004710 3.7e-160 568.9 498 59.6
Aa31LG1G25800 Aethionema arabicum HOM05D004013 ORTHO05D004710 1.1e-159 567.4 475 60.2
AL4G43020 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 9.1e-159 564.3 488 59.2
Lsat_1_v5_gn_8_45601 Lactuca sativa HOM05D004013 ORTHO05D004710 2.6e-158 562.8 467 63.4
Hund22667 Selenicereus undatus HOM05D004013 ORTHO05D004710 2.6e-158 562.8 461 63.3
vmacro10687 Vaccinium macrocarpon HOM05D004013 ORTHO05D004710 3.4e-158 562.4 560 53.8
Sp4g26220 Schrenkiella parvula HOM05D004013 ORTHO05D004710 4.5e-158 562.0 488 58.4
MBI15_g08971_MAGBIO Magnolia biondii HOM05D004013 ORTHO05D004710 2.2e-157 559.7 416 67.3
EL10Ac3g06192 Beta vulgaris HOM05D004013 ORTHO05D004710 1.1e-156 557.4 534 56.7
CDE06G1594 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.5e-156 556.2 491 59.5
AT2G44140 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 7.2e-156 554.7 488 58.6
AL5G42130 Arabidopsis lyrata HOM05D004013 ORTHO05D004710 6.1e-155 551.6 488 57.6
Sp5g03230 Schrenkiella parvula HOM05D004013 ORTHO05D004710 1.4e-154 550.4 490 57.6
CSS0004368 Camellia sinensis var. sinensis HOM05D004013 ORTHO05D004710 3.9e-154 548.9 497 59.0
HanXRQChr12g0363401 Helianthus annuus HOM05D004013 ORTHO05D004710 3.9e-154 548.9 397 68.0
CAN.G140.48 Capsicum annuum HOM05D004013 ORTHO05D004710 5.1e-154 548.5 517 56.3
Ah.07g203370 Amaranthus hybridus HOM05D004013 ORTHO05D004710 9.7e-153 544.3 501 58.3
Os04g0682000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 1.3e-152 543.9 487 56.7
CDE04G0030 Ceratophyllum demersum HOM05D004013 ORTHO05D004710 2.8e-152 542.7 491 58.5
Sopen01g002230 Solanum pennellii HOM05D004013 ORTHO05D004710 3.7e-152 542.3 484 57.0
AUR62002510 Chenopodium quinoa HOM05D004013 ORTHO05D004710 4.8e-152 542.0 516 57.8
Solyc01g006230.3 Solanum lycopersicum HOM05D004013 ORTHO05D004710 8.2e-152 541.2 484 56.8
HanXRQChr08g0212421 Helianthus annuus HOM05D004013 ORTHO05D004710 1.4e-151 540.4 402 65.7
AT3G59950 Arabidopsis thaliana HOM05D004013 ORTHO05D004710 3.1e-151 539.3 489 56.4
CARHR139300 Cardamine hirsuta HOM05D004013 ORTHO05D004710 9.1e-151 537.7 427 60.4
Nitab4.5_0001568g0070 Nicotiana tabacum HOM05D004013 ORTHO05D004710 1.2e-150 537.3 406 64.8
C04p32840 Brassica napus HOM05D004013 ORTHO05D004710 1.5e-150 537.0 429 60.6
Nitab4.5_0005132g0050 Nicotiana tabacum HOM05D004013 ORTHO05D004710 2.6e-150 536.2 406 64.3
BcaC02g10096 Brassica carinata HOM05D004013 ORTHO05D004710 4.5e-150 535.4 429 60.6
BolC4t24846H Brassica oleracea HOM05D004013 ORTHO05D004710 4.5e-150 535.4 429 60.6
BraA04t15923Z Brassica rapa HOM05D004013 ORTHO05D004710 7.7e-150 534.6 427 61.1
PGSC0003DMG400032144 Solanum tuberosum HOM05D004013 ORTHO05D004710 1.0e-149 534.3 489 57.5
Migut.L00278 Erythranthe guttata HOM05D004013 ORTHO05D004710 8.5e-149 531.2 514 57.4
Oeu011024.1 Olea europaea HOM05D004013 ORTHO05D004710 8.5e-149 531.2 398 65.1
CARHR170260 Cardamine hirsuta HOM05D004013 ORTHO05D004710 1.1e-148 530.8 433 61.2
AUR62023683 Chenopodium quinoa HOM05D004013 ORTHO05D004710 1.1e-148 530.8 405 66.4
RcHm_v2.0_Chr6g0259021 Rosa chinensis HOM05D004013 ORTHO05D004710 1.4e-148 530.4 426 66.0
FAN24G3388 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.9e-148 530.0 429 64.1
FAN20G2928 Fragaria x ananassa HOM05D004013 ORTHO05D004710 2.5e-148 529.6 430 64.9
A04p01980 Brassica napus HOM05D004013 ORTHO05D004710 3.2e-148 529.3 430 60.5
FvH4_2g06800 Fragaria vesca HOM05D004013 ORTHO05D004710 3.2e-148 529.3 430 64.4
BcaB02g08204 Brassica carinata HOM05D004013 ORTHO05D004710 7.2e-148 528.1 402 62.9
MSTRG.23493 Avicennia marina HOM05D004013 ORTHO05D004710 9.4e-148 527.7 512 55.9
Thhalv10005940m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 1.6e-147 526.9 402 63.2
FAN27G1923 Fragaria x ananassa HOM05D004013 ORTHO05D004710 1.4e-146 523.9 421 64.4
Carub.0004s2669 Capsella rubella HOM05D004013 ORTHO05D004710 3.0e-146 522.7 402 61.9
Carub.0005s2667 Capsella rubella HOM05D004013 ORTHO05D004710 8.8e-146 521.2 446 58.1
Os03g0391000 Oryza sativa ssp. japonica HOM05D004013 ORTHO05D004710 2.0e-145 520.0 478 56.7
BcaC07g40400 Brassica carinata HOM05D004013 ORTHO05D004710 1.7e-144 516.9 437 58.8
Sed0011939 Sechium edule HOM05D004013 ORTHO05D004710 2.8e-144 516.2 364 70.9
BraA09t40658Z Brassica rapa HOM05D004013 ORTHO05D004710 4.8e-144 515.4 433 58.7
FAN15G0687 Fragaria x ananassa HOM05D004013 ORTHO05D004710 6.3e-144 515.0 401 65.6
SalBow7G0073 Salvia bowleyana HOM05D004013 ORTHO05D004710 8.2e-144 514.6 556 53.2
Migut.L00578 Erythranthe guttata HOM05D004013 ORTHO05D004710 1.1e-143 514.2 397 65.5
Zm00001eb065800 Zea mays HOM05D004013 ORTHO05D004710 1.1e-143 514.2 473 56.2
SHI01175 Sapria himalayana HOM05D004013 ORTHO05D004710 4.1e-143 512.3 455 59.6
ClCG06G010000 Citrullus lanatus HOM05D004013 ORTHO05D004710 2.0e-142 510.0 362 70.4
HPP92_020809 Vanilla planifolia HOM05D004013 ORTHO05D004710 2.6e-142 509.6 465 57.2
BcaB02g08917 Brassica carinata HOM05D004013 ORTHO05D004710 1.3e-141 507.3 493 53.5
SEGI_37986 Sequoiadendron giganteum HOM05D004013 ORTHO05D004710 2.2e-141 506.5 472 56.6
BcaC02g12335 Brassica carinata HOM05D004013 ORTHO05D004710 1.1e-140 504.2 459 56.0
C04p05030 Brassica napus HOM05D004013 ORTHO05D004710 1.1e-140 504.2 459 56.0
BolC4t22136H Brassica oleracea HOM05D004013 ORTHO05D004710 1.1e-140 504.2 459 56.0
BolC8t51099H Brassica oleracea HOM05D004013 ORTHO05D004710 3.2e-140 502.7 444 58.1
A09p52290 Brassica napus HOM05D004013 ORTHO05D004710 7.2e-140 501.5 458 55.5
SGA_v2.0_scaffold37G14795 Striga asiatica HOM05D004013 ORTHO05D004710 1.6e-139 500.4 407 61.7
Thhalv10001432m.g Eutrema salsugineum HOM05D004013 ORTHO05D004710 2.7e-139 499.6 402 60.9
Ah.13g073110 Amaranthus hybridus HOM05D004013 ORTHO05D004710 4.7e-139 498.8 402 62.2
Dinv18636 Davidia involucrata HOM05D004013 ORTHO05D004710 1.4e-138 497.3 317 76.0
BcaC07g40539 Brassica carinata HOM05D004013 ORTHO05D004710 1.8e-138 496.9 404 60.4
A05p04250 Brassica napus HOM05D004013 ORTHO05D004710 5.2e-138 495.4 460 56.5
BraA05t19410Z Brassica rapa HOM05D004013 ORTHO05D004710 6.7e-138 495.0 460 56.5
DCAR_026793 Daucus carota HOM05D004013 ORTHO05D004710 3.7e-136 489.2 400 61.5
SGA_v2.0_scaffold3G01797 Striga asiatica HOM05D004013 ORTHO05D004710 3.1e-135 486.1 517 51.8
unitig_748.g8760 Utricularia gibba HOM05D004013 ORTHO05D004710 3.5e-134 482.6 437 57.2
Zm00001eb433950 Zea mays HOM05D004013 ORTHO05D004710 1.5e-132 477.2 372 64.0
Oeu034368.2 Olea europaea HOM05D004013 ORTHO05D004710 4.4e-129 465.7 634 45.1
Peaxi162Scf00441g00621 Petunia axillaris HOM05D004013 ORTHO05D004710 2.7e-126 456.4 405 57.3
Sc08g0007990 Simmondsia chinensis HOM05D004013 ORTHO05D004710 5.9e-126 455.3 377 61.3
Pp3c11_22820 Physcomitrium patens HOM05D004013 ORTHO05D004710 2.2e-125 453.4 401 55.6
THA.LOC104808419 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 9.5e-124 448.0 311 68.8
Pp3c7_280 Physcomitrium patens HOM05D004013 ORTHO05D004710 5.9e-118 428.7 403 53.8
Mapoly0153s0038 Marchantia polymorpha HOM05D004013 ORTHO05D004710 2.1e-115 420.2 447 47.7
SMO145G0104 Selaginella moellendorffii HOM05D004013 ORTHO05D004710 1.3e-109 401.0 376 54.8
Sabra17G0005400 Salix brachista HOM05D004013 ORTHO05D004710 4.7e-91 339.3 279 63.8
Oeu053147.1 Olea europaea HOM05D004013 ORTHO05D004710 2.6e-89 333.6 350 54.3
Actinidia29462 Actinidia chinensis HOM05D004013 ORTHO05D004710 1.5e-81 307.8 220 68.6
Hma1.2p1_1910F.1_g307280 Hydrangea macrophylla HOM05D004013 ORTHO05D004710 4.9e-80 302.8 251 61.0
Zm00001eb419970 Zea mays HOM05D004013 ORTHO05D004710 6.0e-78 295.8 203 68.5
Actinidia29461 Actinidia chinensis HOM05D004013 ORTHO05D004710 2.5e-76 290.4 227 66.1
C08p34940 Brassica napus HOM05D004013 ORTHO05D004710 2.9e-72 276.9 218 59.6
CBR_g21952 Chara braunii HOM05D004013 ORTHO05D004710 1.6e-67 261.2 310 45.5
Zm00001eb264230 Zea mays HOM05D004013 ORTHO05D004710 2.6e-65 253.8 237 54.4
Actinidia36638 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.8e-59 233.0 415 40.5
Oeu037862.1 Olea europaea HOM05D004013 ORTHO05D004710 6.3e-51 206.1 266 42.5
PRCOL_00001711 Prasinoderma coloniale HOM05D004013 ORTHO05D004710 1.5e-49 201.4 474 32.7
unitig_32.g11897 Utricularia gibba HOM05D004013 ORTHO05D004710 2.2e-40 171.0 264 42.4
C08p34950 Brassica napus HOM05D004013 ORTHO05D004710 2.0e-36 157.9 160 55.0
THA.LOC104804900 Tarenaya hassleriana HOM05D004013 ORTHO05D004710 1.6e-30 138.3 215 40.5
Cre12.g510100 Chlamydomonas reinhardtii HOM05D004013 ORTHO05D004710 1.0e-29 135.6 653 23.1
MCO13G568 Micromonas commoda HOM05D004013 ORTHO05D004710 1.0e-29 135.6 286 32.2
Peaxi162Scf00271g00518 Petunia axillaris HOM05D004013 ORTHO05D004710 3.9e-29 133.7 120 55.0
ClCG06G009970 Citrullus lanatus HOM05D004013 ORTHO05D004710 3.3e-28 130.6 105 63.8
Atru.chr3.2624 Acer truncatum HOM05D004013 ORTHO05D004710 1.4e-26 125.2 237 39.2
Actinidia03474 Actinidia chinensis HOM05D004013 ORTHO05D004710 4.1e-26 123.6 143 47.6
arahy.Tifrunner.gnm1.ann1.MVA4LE Arachis hypogaea HOM05D004013 ORTHO05D004710 7.0e-26 122.9 123 56.9
Actinidia03477 Actinidia chinensis HOM05D004013 ORTHO05D004710 5.0e-24 116.7 102 63.7
arahy.Tifrunner.gnm1.ann1.AC7664 Arachis hypogaea HOM05D004013 ORTHO05D004710 3.7e-19 100.5 99 56.6
ATR0807G232 Amborella trichopoda HOM05D004013 ORTHO05D004710 2.6e-12 77.8 65 61.5
Cfa022146 Carpinus fangiana HOM05D004013 ORTHO05D124891 8.3e-11 72.8 354 26.3
ATR0807G053 Amborella trichopoda HOM05D004013 ORTHO05D004710 1.1e-10 72.4 50 66.0
CBR_g50173 Chara braunii HOM05D004013 ORTHO05D004710 5.0e-08 63.5 50 60.0


User provided reference genes

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