Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10018449m.g Citrus clementina HOM05D004392 ORTHO05D004846 0.0e+00 3780.3 1951 100.0
Atru.chr5.766 Acer truncatum HOM05D004392 ORTHO05D004846 0.0e+00 2952.9 1985 78.8
Thecc.01G333400 Theobroma cacao HOM05D004392 ORTHO05D004846 0.0e+00 2620.9 1975 70.8
Manes.01G240000 Manihot esculenta HOM05D004392 ORTHO05D004846 0.0e+00 2553.1 1994 69.1
Gohir.D12G120100 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2539.2 1961 68.8
Gorai.008G130800 Gossypium raimondii HOM05D004392 ORTHO05D004846 0.0e+00 2533.4 1961 68.7
Gohir.A12G116600 Gossypium hirsutum HOM05D004392 ORTHO05D004846 0.0e+00 2528.4 1961 68.6
Potri.014G105601 Populus trichocarpa HOM05D004392 ORTHO05D004846 0.0e+00 2512.3 1985 69.0
Cfa003736 Carpinus fangiana HOM05D004392 ORTHO05D004846 0.0e+00 2511.5 1989 68.8
QL08p047226 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 2496.8 1991 68.2
GSVIVG01027438001 Vitis vinifera HOM05D004392 ORTHO05D004846 0.0e+00 2489.5 1962 68.7
Sabra14G0077700 Salix brachista HOM05D004392 ORTHO05D004846 0.0e+00 2481.8 1982 68.4
Haze_15733 Corylus avellana HOM05D004392 ORTHO05D004846 0.0e+00 2476.4 2140 64.3
TWI59G0442 Tripterygium wilfordii HOM05D004392 ORTHO05D004846 0.0e+00 2437.5 1999 66.0
CiPaw.01G082300 Carya illinoinensis HOM05D004392 ORTHO05D004846 0.0e+00 2426.0 2012 66.3
Prupe.2G197500 Prunus persica HOM05D004392 ORTHO05D004846 0.0e+00 2421.0 1975 66.8
MD07G1159400 Malus domestica HOM05D004392 ORTHO05D004846 0.0e+00 2393.2 1968 66.4
COL.COLO4_23048 Corchorus olitorius HOM05D004392 ORTHO05D004846 0.0e+00 2376.7 1958 65.9
Duzib138G1478 Durio zibethinus HOM05D004392 ORTHO05D004846 0.0e+00 2376.7 1973 65.6
FAN06G0296 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2325.8 1987 64.0
FvH4_7g17640 Fragaria vesca HOM05D004392 ORTHO05D004846 0.0e+00 2313.9 1974 64.1
FAN06G0139 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2305.4 1967 64.0
Rhsim07G0000300 Rhododendron simsii HOM05D004392 ORTHO05D004846 0.0e+00 2297.3 1997 63.1
FAN03G2506 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2292.7 1951 64.3
RcHm_v2.0_Chr1g0361071 Rosa chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2280.4 1990 63.6
FAN10G3859 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2270.4 1966 63.4
TAR636G2848 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 2270.0 2007 62.8
FAN10G1489 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2265.0 1958 63.0
FAN01G0919 Fragaria x ananassa HOM05D004392 ORTHO05D004846 0.0e+00 2248.8 1984 62.7
Phvul.010G119400 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 2224.5 1958 62.7
Lj3g0000602 Lotus japonicus HOM05D004392 ORTHO05D004846 0.0e+00 2208.7 1944 62.8
Eucgr.D02650 Eucalyptus grandis HOM05D004392 ORTHO05D004846 0.0e+00 2202.2 1984 61.5
Glyma.07G049700 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2193.3 1956 61.9
Sc01g0002200 Simmondsia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2189.1 1996 61.0
Lalb_Chr10g0100861 Lupinus albus HOM05D004392 ORTHO05D004846 0.0e+00 2188.3 1969 62.0
Glyma.16G018400 Glycine max HOM05D004392 ORTHO05D004846 0.0e+00 2187.5 1949 61.5
VMungo0331G0990 Vigna mungo HOM05D004392 ORTHO05D004846 0.0e+00 2183.3 1999 60.8
CsaV3_3G007340 Cucumis sativus L. HOM05D004392 ORTHO05D004846 0.0e+00 2179.1 2014 59.7
Hma1.2p1_0074F.1_g038710 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 0.0e+00 2178.3 1627 69.9
PGR031G1055 Punica granatum HOM05D004392 ORTHO05D004846 0.0e+00 2178.3 2000 61.1
arahy.Tifrunner.gnm1.ann1.9PW2R5 Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2177.9 1987 61.1
Actinidia08006 Actinidia chinensis HOM05D004392 ORTHO05D004846 0.0e+00 2174.4 1547 71.8
CSS0009785 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 2174.4 1551 71.6
arahy.Tifrunner.gnm1.ann1.H04KSL Arachis hypogaea HOM05D004392 ORTHO05D004846 0.0e+00 2163.3 1999 60.7
MBI12_g11801_MAGBIO Magnolia biondii HOM05D004392 ORTHO05D004846 0.0e+00 2154.4 2002 59.0
Ca_26063_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 0.0e+00 2142.5 1956 61.2
THA.LOC104801349 Tarenaya hassleriana HOM05D004392 ORTHO05D004846 0.0e+00 2134.4 1983 59.6
TPR.G19826 Trifolium pratense HOM05D004392 ORTHO05D004846 0.0e+00 2126.7 1950 60.9
Psat4g164000 Pisum sativum HOM05D004392 ORTHO05D004846 0.0e+00 2124.7 1963 60.8
Medtr8g024320 Medicago truncatula HOM05D004392 ORTHO05D004846 0.0e+00 2076.2 1932 60.4
Hund27149 Selenicereus undatus HOM05D004392 ORTHO05D004846 0.0e+00 2068.1 2087 57.5
ClCG05G000190 Citrullus lanatus HOM05D004392 ORTHO05D004846 0.0e+00 2059.3 1991 57.6
Aqoxy5G04345 Aquilegia oxysepala HOM05D004392 ORTHO05D004846 0.0e+00 2039.6 2012 57.5
Thhalv10028358m.g Eutrema salsugineum HOM05D004392 ORTHO05D004846 0.0e+00 2030.8 1979 57.5
Aa31LG5G1150 Aethionema arabicum HOM05D004392 ORTHO05D004846 0.0e+00 2026.5 1988 57.4
MELO3C005953.2 Cucumis melo HOM05D004392 ORTHO05D004846 0.0e+00 2026.5 2109 54.8
Lj9C607G8 Lonicera japonica HOM05D004392 ORTHO05D004846 0.0e+00 2026.1 2138 55.9
AL6G52660 Arabidopsis lyrata HOM05D004392 ORTHO05D004846 0.0e+00 2013.8 1980 56.7
Carub.0006s3583 Capsella rubella HOM05D004392 ORTHO05D004846 0.0e+00 2009.6 1971 57.2
AT4G00800 Arabidopsis thaliana HOM05D004392 ORTHO05D004846 0.0e+00 1997.6 1969 56.6
BolC9t53041H Brassica oleracea HOM05D004392 ORTHO05D004846 0.0e+00 1997.6 1851 59.2
Sed0010760 Sechium edule HOM05D004392 ORTHO05D004846 0.0e+00 1997.2 1986 56.2
BcaC04g24098 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1994.5 1871 58.8
C09p01080 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1992.2 1944 57.2
Sp6g01320 Schrenkiella parvula HOM05D004392 ORTHO05D004846 0.0e+00 1988.0 1983 56.5
AUR62004560 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1984.9 1962 57.7
PSO063G6286 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1980.3 2022 56.0
A09p00990 Brassica napus HOM05D004392 ORTHO05D004846 0.0e+00 1973.4 1854 58.8
BcaB01g02315 Brassica carinata HOM05D004392 ORTHO05D004846 0.0e+00 1972.6 1967 57.2
Nn3g18803 Nelumbo nucifera HOM05D004392 ORTHO05D004846 0.0e+00 1972.2 1476 68.6
Dinv34257 Davidia involucrata HOM05D004392 ORTHO05D004846 0.0e+00 1965.7 1691 64.4
AUR62022676 Chenopodium quinoa HOM05D004392 ORTHO05D004846 0.0e+00 1963.0 1990 56.8
PSO782G2296 Papaver somniferum HOM05D004392 ORTHO05D004846 0.0e+00 1959.9 2014 56.2
BraA09t35770Z Brassica rapa HOM05D004392 ORTHO05D004846 0.0e+00 1958.7 1947 56.8
EL10Ac1g00187 Beta vulgaris HOM05D004392 ORTHO05D004846 0.0e+00 1952.6 2067 55.0
Ah.05g178970 Amaranthus hybridus HOM05D004392 ORTHO05D004846 0.0e+00 1948.7 1983 56.3
Migut.B01921 Erythranthe guttata HOM05D004392 ORTHO05D004846 0.0e+00 1942.9 1972 56.0
Oeu028215.3 Olea europaea HOM05D004392 ORTHO05D004846 0.0e+00 1939.5 1996 56.3
Cc02_g39950 Coffea canephora HOM05D004392 ORTHO05D004846 0.0e+00 1894.0 1874 55.8
CSS0004566 Camellia sinensis var. sinensis HOM05D004392 ORTHO05D004846 0.0e+00 1887.8 1339 72.1
CDE02G2120 Ceratophyllum demersum HOM05D004392 ORTHO05D004846 0.0e+00 1862.8 1963 53.5
MSTRG.17382 Avicennia marina HOM05D004392 ORTHO05D004846 0.0e+00 1845.9 1989 52.6
Sopen05g026910 Solanum pennellii HOM05D004392 ORTHO05D004846 0.0e+00 1838.5 1971 52.5
CAN.G929.34 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1828.5 1859 54.7
Solyc05g044610.3 Solanum lycopersicum HOM05D004392 ORTHO05D004846 0.0e+00 1828.1 1952 53.2
SalBow3G1181 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1822.0 1946 53.4
Peaxi162Scf00462g00512 Petunia axillaris HOM05D004392 ORTHO05D004846 0.0e+00 1821.2 1993 52.5
Nitab4.5_0000006g0150 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1806.6 1898 53.8
SGA_v2.0_scaffold98G29423 Striga asiatica HOM05D004392 ORTHO05D004846 0.0e+00 1804.6 1967 53.3
ECA233G3878 Erigeron canadensis HOM05D004392 ORTHO05D004846 0.0e+00 1754.6 1976 52.6
TAR629G2483 Trochodendron aralioides HOM05D004392 ORTHO05D004846 0.0e+00 1747.3 1241 72.3
HanXRQChr11g0352941 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1737.2 1960 52.8
HanXRQChr11g0352951 Helianthus annuus HOM05D004392 ORTHO05D004846 0.0e+00 1737.2 1960 52.8
Lsat_1_v5_gn_3_140700 Lactuca sativa HOM05D004392 ORTHO05D004846 0.0e+00 1726.8 1969 52.4
Nitab4.5_0011074g0010 Nicotiana tabacum HOM05D004392 ORTHO05D004846 0.0e+00 1718.4 1882 52.4
SalBow3G3735 Salvia bowleyana HOM05D004392 ORTHO05D004846 0.0e+00 1717.6 1946 51.3
DCAR_013954 Daucus carota HOM05D004392 ORTHO05D004846 0.0e+00 1710.3 1754 54.5
ATR0304G014 Amborella trichopoda HOM05D004392 ORTHO05D004846 0.0e+00 1660.2 1479 58.8
QL10p065016 Quercus lobata HOM05D004392 ORTHO05D004846 0.0e+00 1615.1 1184 71.9
Zm00001eb230740 Zea mays HOM05D004392 ORTHO05D004846 0.0e+00 1615.1 1859 49.6
vmacro00026 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 0.0e+00 1177.9 1114 60.9
Mapoly0063s0095 Marchantia polymorpha HOM05D004392 ORTHO05D004846 0.0e+00 1137.9 1791 39.6
CARHR249530 Cardamine hirsuta HOM05D004392 ORTHO05D004846 0.0e+00 1090.1 977 59.8
AagrBONN_evm.TU.Sc2ySwM_368.256 Anthoceros agrestis HOM05D004392 ORTHO05D004846 0.0e+00 1089.7 1993 37.6
CAN.G1674.1 Capsicum annuum HOM05D004392 ORTHO05D004846 0.0e+00 1088.9 1875 40.1
unitig_736.g22806 Utricularia gibba HOM05D004392 ORTHO05D004846 2.7e-311 1073.2 1975 38.4
SMO114G0120 Selaginella moellendorffii HOM05D004392 ORTHO05D004846 5.9e-310 1068.5 1635 39.6
vmacro00027 Vaccinium macrocarpon HOM05D004392 ORTHO05D004846 1.8e-303 1047.0 899 62.4
Cpa.g.sc193.6 Carica papaya HOM05D004392 ORTHO05D004846 3.1e-303 1046.2 1110 57.6
Pp3c17_2710 Physcomitrium patens HOM05D004392 ORTHO05D004846 5.4e-303 1045.4 1704 38.8
SHI29621 Sapria himalayana HOM05D004392 ORTHO05D004846 2.3e-290 1003.4 1167 51.8
Hma1.2p1_0074F.1_g038700 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 5.6e-276 955.7 988 57.4
SEGI_06399 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.6e-254 882.9 1223 45.1
HPP92_014634 Vanilla planifolia HOM05D004392 ORTHO05D004846 2.5e-252 877.1 1101 48.7
CBR_g34692 Chara braunii HOM05D004392 ORTHO05D004846 1.9e-223 781.2 1778 32.1
Pp3c7_20800 Physcomitrium patens HOM05D004392 ORTHO05D004846 1.4e-221 775.0 1476 36.0
Hma1.2p1_0074F.1_g038720 Hydrangea macrophylla HOM05D004392 ORTHO05D004846 6.5e-208 729.6 582 66.3
Cpa.g.sc193.10 Carica papaya HOM05D004392 ORTHO05D004846 1.0e-200 705.7 541 67.3
CAN.G929.33 Capsicum annuum HOM05D004392 ORTHO05D004846 1.3e-200 705.3 1167 39.8
QL10p065024 Quercus lobata HOM05D004392 ORTHO05D004846 3.6e-182 644.0 471 71.1
CAN.G929.32 Capsicum annuum HOM05D004392 ORTHO05D004846 1.4e-165 589.0 844 45.0
SEGI_29076 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 1.2e-148 532.7 666 46.8
Os02g0124700 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 3.2e-146 524.6 572 50.5
TAR629G0818 Trochodendron aralioides HOM05D004392 ORTHO05D004846 1.8e-136 492.3 748 46.0
HPP92_014635 Vanilla planifolia HOM05D004392 ORTHO05D004846 5.6e-135 487.3 543 50.5
SEGI_11710 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 4.8e-134 484.2 565 45.0
HanXRQChr14g0445111 Helianthus annuus HOM05D004392 ORTHO05D004846 1.0e-99 370.2 277 68.6
SHI29617 Sapria himalayana HOM05D004392 ORTHO05D004846 4.0e-80 305.1 378 47.4
Cc06_g21290 Coffea canephora HOM05D004392 ORTHO05D004846 4.1e-77 295.0 468 40.6
Psat3g045760 Pisum sativum HOM05D004392 ORTHO05D004846 1.0e-64 253.8 381 42.0
BcaB01g02314 Brassica carinata HOM05D004392 ORTHO05D004846 2.2e-62 246.1 743 35.0
Cc00_g18720 Coffea canephora HOM05D004392 ORTHO05D004846 1.1e-56 227.3 227 52.0
Mapoly0036s0138 Marchantia polymorpha HOM05D004392 ORTHO05D004846 6.4e-54 218.0 586 31.7
Cc00_g00890 Coffea canephora HOM05D004392 ORTHO05D004846 3.1e-48 199.1 347 38.9
ATR0304G056 Amborella trichopoda HOM05D004392 ORTHO05D004846 4.0e-48 198.7 549 34.6
Cc05_g02700 Coffea canephora HOM05D004392 ORTHO05D004846 1.0e-43 184.1 192 52.6
Psat3g193680 Pisum sativum HOM05D003463 ORTHO05D030491 4.0e-40 172.2 137 61.3
SEGI_35470 Sequoiadendron giganteum HOM05D004392 ORTHO05D004846 3.4e-39 169.1 226 37.6
Cfa022536 Carpinus fangiana HOM05D004392 ORTHO05D004846 1.2e-33 150.6 1223 21.7
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 3.6e-33 149.1 113 69.0
Cc08_g08700 Coffea canephora HOM05D004392 ORTHO05D004846 4.7e-33 148.7 160 49.4
Cc00_g21570 Coffea canephora HOM05D004392 ORTHO05D004846 5.8e-31 141.7 159 48.4
Psat0s3706g0080 Pisum sativum HOM05D004392 ORTHO05D004846 1.7e-30 140.2 372 32.5
HanXRQChr14g0436131 Helianthus annuus HOM05D004392 ORTHO05D004846 1.9e-29 136.7 121 57.9
Cc07_g19980 Coffea canephora HOM05D004392 ORTHO05D004846 7.1e-29 134.8 162 45.1
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 3.5e-28 132.5 95 72.6
Cre13.g606350 Chlamydomonas reinhardtii HOM05D004392 ORTHO05D004846 7.8e-28 131.3 1043 21.4
arahy.Tifrunner.gnm1.ann1.IVU47Y Arachis hypogaea HOM05D004392 ORTHO05D004846 8.7e-27 127.9 140 55.7
Psat0s2140g0040 Pisum sativum HOM05D004392 ORTHO05D004846 5.6e-26 125.2 82 76.8
Nitab4.5_0002816g0010 Nicotiana tabacum HOM05D003975 ORTHO05D009762 1.3e-25 124.0 116 55.2
Ca_09729_v3 Cicer arietinum L. HOM05D004392 ORTHO05D004846 1.6e-25 123.6 80 71.2
Lsat_1_v5_gn_7_90420 Lactuca sativa HOM05D004392 ORTHO05D004846 6.9e-24 118.2 230 38.3
Cc00_g33390 Coffea canephora HOM05D004392 ORTHO05D004846 2.2e-14 86.7 100 52.0
RcHm_v2.0_Chr1g0361181 Rosa chinensis HOM05D004392 ORTHO05D004846 4.9e-14 85.5 104 44.2
Psat3g157320 Pisum sativum HOM05D004392 ORTHO05D004846 1.1e-13 84.3 165 37.0
Psat0s2975g0200 Pisum sativum HOM05D000832 ORTHO05D019229 1.4e-13 84.0 138 39.9
Psat2g063360 Pisum sativum HOM05D004963 ORTHO05D006638 2.5e-13 83.2 55 69.1
Os10g0182300 Oryza sativa ssp. japonica HOM05D004392 ORTHO05D004846 1.6e-12 80.5 73 57.5
Ah.07g200480 Amaranthus hybridus HOM05D004392 ORTHO05D004846 2.3e-11 76.6 70 57.1
Phvul.002G075100 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 1.5e-10 73.9 145 46.2
FAN07G2918 Fragaria x ananassa HOM05D004392 ORTHO05D004846 1.3e-09 70.9 116 44.8
Psat0s2154g0040 Pisum sativum HOM05D003471 ORTHO05D004079 9.0e-08 64.7 42 73.8
Cpa.g.sc193.11 Carica papaya HOM05D004392 ORTHO05D004846 1.5e-07 63.9 65 50.8
FAN06G3220 Fragaria x ananassa HOM05D011336 ORTHO05D017014 1.5e-07 63.9 201 36.8
FvH4_7g01070 Fragaria vesca HOM05D011336 ORTHO05D017014 2.0e-07 63.5 116 43.1
Phvul.011G172900 Phaseolus vulgaris HOM05D004392 ORTHO05D004846 2.0e-07 63.5 144 41.0
Psat0s3955g0040 Pisum sativum HOM05D000832 ORTHO05D000900 2.0e-07 63.5 105 39.0
Sc25g0003360 Simmondsia chinensis HOM05D004392 ORTHO05D004846 2.2e-06 60.1 77 51.9


User provided reference genes

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