Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1270.0 634 100.0
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 1130.9 674 84.4
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 1077.8 674 80.6
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 7.6e-307 1056.6 674 79.2
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 1.4e-305 1052.4 674 79.4
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 6.0e-304 1047.0 674 79.2
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 3.3e-302 1041.2 673 79.0
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 5.6e-302 1040.4 675 78.5
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 9.6e-302 1039.6 674 79.1
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 8.1e-301 1036.6 674 79.5
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 5.2e-300 1033.9 673 77.0
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 5.2e-300 1033.9 673 78.5
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 4.4e-299 1030.8 674 79.2
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 9.9e-299 1029.6 675 76.7
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 1.7e-298 1028.9 673 77.3
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 4.9e-298 1027.3 675 76.6
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.1e-297 1026.2 674 78.8
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 1.9e-297 1025.4 674 76.6
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 4.2e-297 1024.2 674 77.4
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 6.0e-296 1020.4 674 76.4
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 6.0e-296 1020.4 676 76.9
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 1.3e-295 1019.2 674 76.1
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 2.8e-293 1011.5 676 76.0
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 1.4e-292 1009.2 676 76.2
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 2.4e-292 1008.4 736 70.7
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 3.1e-292 1008.1 674 75.8
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 6.9e-292 1006.9 674 76.6
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 2.6e-291 1005.0 674 75.8
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 5.8e-291 1003.8 673 76.1
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 7.6e-291 1003.4 714 73.4
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 9.9e-291 1003.0 674 76.1
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 1.7e-290 1002.3 674 75.8
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 4.9e-290 1000.7 675 74.8
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 3.2e-289 998.0 674 74.9
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 7.1e-289 996.9 674 75.7
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 1.2e-288 996.1 674 75.5
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 2.1e-288 995.3 676 75.4
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 3.5e-288 994.6 674 74.3
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 1.5e-286 989.2 674 76.4
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 9.6e-286 986.5 674 74.8
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 1.3e-282 976.1 675 74.1
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 1.7e-282 975.7 674 74.8
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 2.2e-282 975.3 676 74.6
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 2.9e-282 974.9 673 73.3
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 3.8e-282 974.5 676 73.4
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 4.9e-282 974.2 676 74.4
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 1.4e-281 972.6 676 74.4
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 1.9e-281 972.2 676 73.4
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 2.4e-281 971.8 682 74.0
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 4.2e-281 971.1 726 71.2
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 2.7e-280 968.4 682 73.8
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 3.5e-280 968.0 674 72.7
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 3.0e-279 964.9 674 72.3
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 5.1e-279 964.1 674 73.0
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 1.5e-278 962.6 677 72.7
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 1.9e-278 962.2 674 72.6
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 2.4e-276 955.3 674 71.2
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 5.3e-276 954.1 674 73.0
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 5.3e-276 954.1 674 73.0
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 2.6e-275 951.8 674 72.3
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 4.5e-275 951.0 674 71.8
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 5.8e-275 950.7 674 72.7
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 7.6e-275 950.3 674 71.4
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 2.9e-274 948.3 674 72.4
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 7.1e-273 943.7 669 71.9
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 6.0e-272 940.6 675 71.9
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 1.1e-270 936.4 674 71.5
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 2.5e-270 935.3 663 74.8
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 4.3e-270 934.5 675 71.3
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 1.8e-268 929.1 675 70.4
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 4.1e-268 927.9 675 70.4
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 2.7e-264 915.2 674 70.2
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 7.9e-264 913.7 672 69.8
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 2.3e-263 912.1 674 70.0
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 3.0e-263 911.8 674 69.9
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 5.1e-263 911.0 674 69.9
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 8.8e-263 910.2 674 69.7
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 6.3e-261 904.0 675 69.6
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 1.7e-258 896.0 667 69.6
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 1.7e-258 896.0 683 68.2
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 6.7e-255 884.0 692 67.1
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 1.9e-249 865.9 634 70.3
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.5e-249 865.5 675 66.4
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 6.1e-248 860.9 682 65.5
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 1.4e-247 859.8 634 70.7
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 1.4e-244 849.7 680 65.3
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 1.4e-244 849.7 590 73.6
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 7.0e-244 847.4 677 64.7
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 9.4e-233 810.4 680 62.2
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 8.0e-232 807.4 466 86.3
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 2.6e-230 802.4 673 62.3
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 5.4e-228 794.7 677 62.0
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 2.1e-224 782.7 669 61.1
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 5.0e-210 734.9 655 59.1
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 6.2e-208 728.0 465 79.6
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 3.5e-195 685.6 530 68.1
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 1.4e-151 540.8 401 72.3
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 1.5e-150 537.3 374 73.5
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 6.5e-141 505.4 307 82.7
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.5e-137 494.2 351 71.2
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.5e-134 484.2 366 67.8
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 1.3e-128 464.5 387 65.1
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 9.1e-127 458.4 283 84.5
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.7e-125 454.1 369 64.0
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 2.2e-120 437.2 280 78.2
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 8.9e-106 388.7 649 39.0
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.0e-102 377.5 464 50.9
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.8e-91 340.5 239 73.2
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 1.4e-87 328.2 297 58.2
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 4.6e-86 323.2 262 66.4
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 5.1e-85 319.7 761 32.7
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 1.5e-84 318.2 260 66.5
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 1.7e-69 268.1 159 83.6
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 8.7e-69 265.8 170 77.6
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 4.9e-64 250.0 229 62.0
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 5.4e-63 246.5 258 53.5
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 1.3e-61 241.9 685 31.5
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 2.8e-59 234.2 204 66.2
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 5.5e-55 219.9 257 56.0
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 6.0e-54 216.5 167 65.9
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.5e-52 211.8 220 56.4
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.3e-51 208.8 170 61.8
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 5.5e-47 193.4 184 56.0
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 7.9e-46 189.5 232 50.9
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.8e-37 161.8 212 48.1
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 1.1e-36 159.1 720 24.7
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 1.6e-30 138.7 109 69.7
Cpa.g.c39725 Carica papaya HOM05D003986 ORTHO05D004916 1.7e-27 128.6 87 69.0
Atru.chr2.736 Acer truncatum HOM05D003986 ORTHO05D004916 1.3e-24 119.0 88 68.2
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 1.3e-24 119.0 61 95.1
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 1.0e-21 109.4 66 75.8
CSS0042784 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 3.9e-21 107.5 82 61.0
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 6.7e-21 106.7 157 33.1
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 8.8e-21 106.3 130 50.8
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.0e-20 105.1 73 72.6
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 1.0e-16 92.8 48 93.8
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 2.5e-15 88.2 46 84.8
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 1.4e-13 82.4 60 60.0
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 1.4e-13 82.4 40 92.5
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 6.7e-13 80.1 40 90.0
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 2.2e-11 75.1 42 76.2


User provided reference genes

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