Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 2.7e-118 428.7 219 100.0
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 5.2e-106 387.9 220 87.7
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 5.2e-106 387.9 219 87.2
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.4e-103 379.8 220 86.8
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 3.2e-103 378.6 217 86.2
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 9.2e-103 377.1 219 86.8
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 1.2e-102 376.7 219 86.3
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 1.6e-102 376.3 217 85.7
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.0e-101 373.6 219 84.9
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.3e-101 373.2 221 84.2
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.3e-101 373.2 219 84.9
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.3e-101 373.2 217 84.8
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 2.3e-101 372.5 217 84.8
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 3.0e-101 372.1 216 83.8
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 3.0e-101 372.1 219 84.9
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 3.9e-101 371.7 220 85.5
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 5.1e-101 371.3 217 86.6
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 6.6e-101 370.9 219 85.8
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 6.6e-101 370.9 219 85.8
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 1.1e-100 370.2 219 83.6
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.5e-100 369.0 217 83.9
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 5.6e-100 367.9 219 84.9
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 9.5e-100 367.1 219 82.6
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 9.5e-100 367.1 219 84.5
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 9.5e-100 367.1 219 84.5
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 1.6e-99 366.3 219 83.6
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 2.1e-99 365.9 218 83.0
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 2.1e-99 365.9 219 83.1
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.1e-99 365.9 219 83.6
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 3.6e-99 365.2 219 84.0
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 3.6e-99 365.2 219 82.2
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.7e-99 364.8 220 83.6
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 8.1e-99 364.0 219 81.7
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 1.1e-98 363.6 218 84.4
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.1e-98 363.6 220 81.8
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 1.1e-98 363.6 220 82.3
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 1.4e-98 363.2 218 82.1
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 1.4e-98 363.2 230 81.3
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 1.4e-98 363.2 219 80.8
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.8e-98 362.8 218 82.6
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 2.3e-98 362.5 219 83.1
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 2.3e-98 362.5 219 82.2
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 2.3e-98 362.5 218 83.5
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 2.3e-98 362.5 220 83.2
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 2.3e-98 362.5 221 81.9
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 2.3e-98 362.5 217 82.5
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.0e-98 361.7 220 82.3
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 4.0e-98 361.7 220 82.3
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.2e-98 361.3 221 81.9
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 5.2e-98 361.3 219 82.2
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 6.8e-98 360.9 220 83.2
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 2.0e-97 359.4 221 81.9
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 2.0e-97 359.4 221 81.9
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 2.0e-97 359.4 217 80.2
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 2.0e-97 359.4 220 83.2
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 2.6e-97 359.0 218 83.5
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 2.6e-97 359.0 221 84.2
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 4.4e-97 358.2 216 81.5
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 5.8e-97 357.8 221 81.4
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 9.9e-97 357.1 220 82.3
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 9.9e-97 357.1 220 81.4
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 1.7e-96 356.3 218 84.4
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.7e-96 356.3 220 82.3
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 2.2e-96 355.9 221 81.4
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 2.2e-96 355.9 221 80.5
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 2.2e-96 355.9 221 81.0
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 82.7
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 2.9e-96 355.5 220 81.4
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 2.9e-96 355.5 219 80.4
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 2.9e-96 355.5 219 80.4
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 2.9e-96 355.5 218 82.1
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 6.4e-96 354.4 218 83.9
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 6.4e-96 354.4 221 80.5
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 8.4e-96 354.0 218 80.3
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 8.4e-96 354.0 215 84.2
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 1.1e-95 353.6 219 79.5
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 1.1e-95 353.6 220 80.0
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.4e-95 353.2 220 80.9
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 1.4e-95 353.2 219 79.5
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.9e-95 352.8 220 81.4
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 1.9e-95 352.8 220 80.5
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 1.9e-95 352.8 219 79.9
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 1.9e-95 352.8 221 79.6
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 2.4e-95 352.4 220 80.5
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 3.2e-95 352.1 220 80.5
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 3.2e-95 352.1 220 80.5
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 3.2e-95 352.1 220 80.5
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 4.1e-95 351.7 220 79.5
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 4.1e-95 351.7 220 80.5
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 80.0
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 80.0
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 80.0
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 7.1e-95 350.9 218 80.7
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 1.2e-94 350.1 218 81.7
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 1.2e-94 350.1 218 81.2
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 1.2e-94 350.1 221 79.6
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 1.2e-94 350.1 218 80.7
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.6e-94 349.7 220 80.0
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 1.6e-94 349.7 220 80.0
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 1.6e-94 349.7 221 79.6
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 2.1e-94 349.4 220 80.0
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.1e-94 349.4 221 79.6
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 2.7e-94 349.0 219 79.5
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 2.7e-94 349.0 225 78.7
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 2.7e-94 349.0 220 79.5
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 80.0
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 79.5
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 7.8e-94 347.4 214 82.2
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 2.3e-93 345.9 218 80.7
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 3.0e-93 345.5 220 79.1
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 3.9e-93 345.1 220 79.5
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 6.6e-93 344.4 220 80.9
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.9e-92 342.8 219 79.9
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 2.5e-92 342.4 220 80.9
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 2.1e-91 339.3 218 77.5
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 2.1e-91 339.3 218 77.5
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 6.2e-91 337.8 219 77.6
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 6.2e-91 337.8 215 80.0
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 6.8e-90 334.3 214 77.6
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.6e-86 323.2 219 75.3
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 3.1e-82 308.9 216 74.5
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 3.4e-81 305.4 165 89.7
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 3.4e-81 305.4 172 84.9
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 5.8e-81 304.7 193 78.2
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 3.8e-80 302.0 224 72.8
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 3.3e-76 288.9 163 84.0
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 2.1e-75 286.2 186 75.8
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.2e-72 276.2 165 83.0
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.9e-72 275.8 184 72.8
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 5.5e-71 271.6 173 75.1
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 9.3e-71 270.8 162 79.6
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 9.3e-71 270.8 162 80.9
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 1.1e-68 263.8 219 65.8
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 2.4e-58 229.6 218 56.9
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.4e-58 229.6 219 58.0
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 1.9e-55 219.9 220 56.8
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.2e-46 190.7 216 50.5
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 2.1e-46 189.9 127 74.8
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 1.8e-45 186.8 170 57.1
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 3.0e-45 186.0 142 71.8
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 4.8e-43 178.7 150 56.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 2.1e-30 136.7 107 71.0
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-15 87.8 59 72.9
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.1e-15 87.8 59 72.9
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.1e-07 61.2 57 56.1
Nitab4.5_0007144g0010 Nicotiana tabacum HOM05D005229 ORTHO05D006378 3.6e-06 56.2 55 52.7
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 6.1e-06 55.5 101 39.6


User provided reference genes

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