Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015964m.g Citrus clementina HOM05D006178 ORTHO05D007504 3.3e-186 654.8 320 100.0
Atru.chr11.922 Acer truncatum HOM05D006178 ORTHO05D007504 1.2e-138 496.9 318 75.5
Thecc.02G292800 Theobroma cacao HOM05D006178 ORTHO05D007504 7.8e-135 484.2 314 74.5
Duzib251G0568 Durio zibethinus HOM05D006178 ORTHO05D007504 2.5e-133 479.2 315 74.0
Gohir.D01G139900 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.2e-131 471.5 316 71.2
Gorai.002G172000 Gossypium raimondii HOM05D006178 ORTHO05D007504 5.2e-131 471.5 316 71.2
Gohir.A01G146700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.9e-131 470.7 316 70.9
MD13G1020300 Malus domestica HOM05D006178 ORTHO05D007504 3.8e-129 465.3 315 71.7
Lj2g0017740 Lotus japonicus HOM05D006178 ORTHO05D007504 1.6e-127 459.9 311 69.5
CiPaw.05G188700 Carya illinoinensis HOM05D006178 ORTHO05D007504 2.7e-127 459.1 315 69.8
Psat6g046400 Pisum sativum HOM05D006178 ORTHO05D007504 3.5e-127 458.8 307 68.7
TWI74G1561 Tripterygium wilfordii HOM05D006178 ORTHO05D007504 2.3e-126 456.1 305 70.5
Medtr1g032430 Medicago truncatula HOM05D006178 ORTHO05D007504 6.6e-126 454.5 310 68.1
Prupe.1G333400 Prunus persica HOM05D006178 ORTHO05D007504 8.7e-126 454.1 322 69.3
QL03p035908 Quercus lobata HOM05D006178 ORTHO05D007504 3.3e-125 452.2 341 66.9
COL.COLO4_16591 Corchorus olitorius HOM05D006178 ORTHO05D007504 4.3e-125 451.8 298 73.5
FvH4_4g33550 Fragaria vesca HOM05D006178 ORTHO05D007504 5.6e-125 451.4 315 70.8
Glyma.02G085100 Glycine max HOM05D006178 ORTHO05D007504 6.2e-124 448.0 308 68.2
Actinidia38440 Actinidia chinensis HOM05D006178 ORTHO05D007504 1.8e-123 446.4 311 71.4
FAN07G2930 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.8e-123 446.4 315 69.8
FAN12G1191 Fragaria x ananassa HOM05D006178 ORTHO05D007504 1.8e-123 446.4 325 68.6
FAN22G2090 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.0e-123 445.3 325 68.3
GSVIVG01011660001 Vitis vinifera HOM05D006178 ORTHO05D007504 4.0e-123 445.3 314 66.9
Potri.010G106400 Populus trichocarpa HOM05D006178 ORTHO05D007504 6.9e-123 444.5 312 69.6
CsaV3_5G015780 Cucumis sativus L. HOM05D006178 ORTHO05D007504 1.3e-121 440.3 311 66.2
Hma1.2p1_0277F.1_g111690 Hydrangea macrophylla HOM05D006178 ORTHO05D007504 1.7e-121 439.9 315 65.7
FAN17G1905 Fragaria x ananassa HOM05D006178 ORTHO05D007504 4.9e-121 438.3 324 67.3
TPR.G36937 Trifolium pratense HOM05D006178 ORTHO05D007504 4.9e-121 438.3 308 66.6
Cpa.g.sc2.193 Carica papaya HOM05D006178 ORTHO05D007504 9.3e-120 434.1 315 67.6
Ca_12542_v3 Cicer arietinum L. HOM05D006178 ORTHO05D007504 9.3e-120 434.1 304 67.4
Lalb_Chr17g0338441 Lupinus albus HOM05D006178 ORTHO05D007504 7.9e-119 431.0 292 69.5
Cc11_g07280 Coffea canephora HOM05D006178 ORTHO05D007504 3.9e-118 428.7 313 64.2
ECA246G2474 Erigeron canadensis HOM05D006178 ORTHO05D007504 3.9e-118 428.7 315 66.0
MELO3C016656.2 Cucumis melo HOM05D006178 ORTHO05D007504 1.6e-116 423.3 325 63.7
THA.LOC104821906 Tarenaya hassleriana HOM05D006178 ORTHO05D007504 2.8e-116 422.5 316 64.2
Thhalv10007963m.g Eutrema salsugineum HOM05D006178 ORTHO05D007504 4.5e-114 415.2 312 65.4
Manes.15G134200 Manihot esculenta HOM05D006178 ORTHO05D007504 5.8e-114 414.8 316 64.6
HanXRQChr15g0476731 Helianthus annuus HOM05D006178 ORTHO05D007504 2.2e-113 412.9 308 63.6
Eucgr.B02675 Eucalyptus grandis HOM05D006178 ORTHO05D007504 3.8e-113 412.1 309 65.7
Sc04g0008610 Simmondsia chinensis HOM05D006178 ORTHO05D007504 3.8e-113 412.1 306 65.7
AT1G24793 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 8.4e-113 411.0 306 64.1
AT1G25054 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 8.4e-113 411.0 306 64.1
AT1G25145 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 8.4e-113 411.0 306 64.1
AT1G25210 Arabidopsis thaliana HOM05D006178 ORTHO05D007504 8.4e-113 411.0 306 64.1
AL1G40190 Arabidopsis lyrata HOM05D006178 ORTHO05D007504 1.1e-112 410.6 326 62.0
ClCG09G011820 Citrullus lanatus HOM05D006178 ORTHO05D007504 2.4e-112 409.5 304 65.1
arahy.Tifrunner.gnm1.ann1.56CUD8 Arachis hypogaea HOM05D006178 ORTHO05D007504 5.5e-112 408.3 307 63.8
PGSC0003DMG400028747 Solanum tuberosum HOM05D006178 ORTHO05D007504 5.5e-112 408.3 317 61.5
Sp1g23080 Schrenkiella parvula HOM05D006178 ORTHO05D007504 9.3e-112 407.5 309 63.8
arahy.Tifrunner.gnm1.ann1.M99K8C Arachis hypogaea HOM05D006178 ORTHO05D007504 2.7e-111 406.0 307 63.8
Carub.0001s2539 Capsella rubella HOM05D006178 ORTHO05D007504 3.5e-111 405.6 329 61.4
A08p26780 Brassica napus HOM05D006178 ORTHO05D007504 7.9e-111 404.4 312 63.5
Ah.02g128010 Amaranthus hybridus HOM05D006178 ORTHO05D007504 1.0e-110 404.1 312 61.9
Oeu044010.1 Olea europaea HOM05D006178 ORTHO05D007504 5.1e-110 401.7 293 65.2
EL10Ac2g02672 Beta vulgaris HOM05D006178 ORTHO05D007504 6.7e-110 401.4 307 62.9
Solyc07g008850.3 Solanum lycopersicum HOM05D006178 ORTHO05D007504 8.7e-110 401.0 317 60.3
CAN.G511.14 Capsicum annuum HOM05D006178 ORTHO05D007504 1.1e-109 400.6 315 61.6
Sopen07g004780 Solanum pennellii HOM05D006178 ORTHO05D007504 3.3e-109 399.1 321 60.4
PSO017G4246 Papaver somniferum HOM05D006178 ORTHO05D007504 4.3e-109 398.7 304 62.8
Phvul.003G019200 Phaseolus vulgaris HOM05D006178 ORTHO05D007504 9.6e-109 397.5 307 62.5
PSO478G4000 Papaver somniferum HOM05D006178 ORTHO05D007504 1.6e-108 396.7 304 62.2
Migut.E00482 Erythranthe guttata HOM05D006178 ORTHO05D007504 6.2e-108 394.8 317 62.8
DCAR_007330 Daucus carota HOM05D006178 ORTHO05D007504 8.1e-108 394.4 298 63.8
Lj6C738G3 Lonicera japonica HOM05D001486 ORTHO05D007504 1.4e-107 393.7 298 63.1
BraA08t34624Z Brassica rapa HOM05D006178 ORTHO05D007504 1.8e-107 393.3 308 61.7
Lsat_1_v5_gn_3_53481 Lactuca sativa HOM05D006178 ORTHO05D007504 2.4e-107 392.9 301 64.8
BcaB03g12042 Brassica carinata HOM05D006178 ORTHO05D007504 5.3e-107 391.7 299 63.2
C03p73180 Brassica napus HOM05D006178 ORTHO05D007504 1.2e-106 390.6 334 58.4
BolC3t19616H Brassica oleracea HOM05D006178 ORTHO05D007504 1.2e-106 390.6 334 58.4
BcaC01g01670 Brassica carinata HOM05D006178 ORTHO05D007504 1.5e-106 390.2 334 58.7
SalBow2G2905 Salvia bowleyana HOM05D006178 ORTHO05D007504 5.8e-106 388.3 320 58.8
MBI13_g29562_MAGBIO Magnolia biondii HOM05D006178 ORTHO05D007504 3.2e-104 382.5 313 62.3
Aqoxy3G00007 Aquilegia oxysepala HOM05D006178 ORTHO05D007504 1.2e-103 380.6 314 60.2
AUR62014248 Chenopodium quinoa HOM05D006178 ORTHO05D007504 6.0e-103 378.3 296 62.2
AUR62038473 Chenopodium quinoa HOM05D006178 ORTHO05D007504 2.3e-102 376.3 296 61.5
Aa31LG7G9330 Aethionema arabicum HOM05D006178 ORTHO05D007504 6.7e-102 374.8 327 57.8
Haze_10879 Corylus avellana HOM05D006178 ORTHO05D007504 1.4e-99 367.1 249 72.3
Hund24927 Selenicereus undatus HOM05D006178 ORTHO05D007504 1.1e-96 357.5 394 49.0
Peaxi162Scf00937g00336 Petunia axillaris HOM05D006178 ORTHO05D007504 5.5e-96 355.1 299 57.9
vmacro00552 Vaccinium macrocarpon HOM05D006178 ORTHO05D007504 9.3e-96 354.4 326 58.6
Dinv07729 Davidia involucrata HOM05D006178 ORTHO05D007504 7.9e-95 351.3 249 68.3
CANSAT01G0234 Cannabis sativa HOM05D006178 ORTHO05D007504 8.5e-89 331.3 249 66.3
Os03g0223900 Oryza sativa ssp. japonica HOM05D006178 ORTHO05D007504 8.5e-89 331.3 305 53.1
Sabra10G0077800 Salix brachista HOM05D006178 ORTHO05D007504 3.0e-86 322.8 263 62.4
Zm00001eb009130 Zea mays HOM05D006178 ORTHO05D007504 7.4e-85 318.2 311 52.1
ATR0753G153 Amborella trichopoda HOM05D006178 ORTHO05D007504 3.1e-83 312.8 285 55.4
RcHm_v2.0_Chr7g0235121 Rosa chinensis HOM05D006178 ORTHO05D007504 6.5e-81 305.1 211 68.7
Sed0021590 Sechium edule HOM05D006178 ORTHO05D007504 3.2e-80 302.8 229 63.8
SGA_v2.0_scaffold23G10206 Striga asiatica HOM05D006178 ORTHO05D007504 7.9e-79 298.1 281 53.7
Pp3c3_1850 Physcomitrium patens HOM05D006178 ORTHO05D007504 3.9e-78 295.8 305 51.5
HPP92_013128 Vanilla planifolia HOM05D006178 ORTHO05D007504 2.6e-77 293.1 271 55.0
unitig_22.g5599 Utricularia gibba HOM05D000369 ORTHO05D000253 2.4e-75 286.6 315 51.7
Mapoly0012s0127 Marchantia polymorpha HOM05D006178 ORTHO05D007504 1.0e-73 281.2 301 49.5
Nitab4.5_0000018g0160 Nicotiana tabacum HOM05D006178 ORTHO05D007504 6.7e-70 268.5 218 61.5
Gohir.D08G117400 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.7e-69 265.4 195 67.2
Gohir.D13G135551 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.5e-69 265.0 195 66.7
Gorai.001G151600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.8e-68 263.1 194 66.5
Gorai.010G050600 Gossypium raimondii HOM05D006178 ORTHO05D007504 3.7e-68 262.7 194 66.5
Gohir.D07G139600 Gossypium hirsutum HOM05D006178 ORTHO05D007504 1.1e-67 261.2 194 66.5
Gohir.D10G193800 Gossypium hirsutum HOM05D006178 ORTHO05D007504 2.4e-67 260.0 194 66.5
HPP92_013158 Vanilla planifolia HOM05D006178 ORTHO05D007504 1.6e-66 257.3 208 56.7
Nitab4.5_0009975g0010 Nicotiana tabacum HOM05D006178 ORTHO05D007504 2.9e-65 253.1 242 56.2
CSS0005024 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.2e-64 249.6 202 63.9
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 5.5e-64 248.8 231 55.0
CSS0001732 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.7e-63 246.5 194 64.4
Gohir.D11G251901 Gossypium hirsutum HOM05D006178 ORTHO05D007504 7.5e-61 238.4 194 62.4
CBR_g12524 Chara braunii HOM05D006178 ORTHO05D007504 8.3e-60 235.0 382 37.4
SMO232G0119 Selaginella moellendorffii HOM05D006178 ORTHO05D007504 9.1e-59 231.5 294 43.2
Gorai.005G149500 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.8e-55 219.9 195 58.5
TAR629G3300 Trochodendron aralioides HOM05D006178 ORTHO05D007504 1.2e-53 214.5 196 58.2
Gorai.005G145500 Gossypium raimondii HOM05D006178 ORTHO05D007504 4.9e-52 209.1 204 55.9
MCO09G291 Micromonas commoda HOM05D006178 ORTHO05D007504 1.5e-45 187.6 293 41.0
TAR629G1361 Trochodendron aralioides HOM05D006178 ORTHO05D007504 5.4e-43 179.1 107 72.0
CSS0007559 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 2.7e-42 176.8 104 76.9
CSS0004101 Camellia sinensis var. sinensis HOM05D006178 ORTHO05D007504 3.5e-42 176.4 104 76.9
PRCOL_00001866 Prasinoderma coloniale HOM05D006178 ORTHO05D007504 6.6e-41 172.2 310 37.7
Gorai.007G245600 Gossypium raimondii HOM05D006178 ORTHO05D007504 2.8e-39 166.8 123 65.9
Gohir.D11G228700 Gossypium hirsutum HOM05D006178 ORTHO05D007504 5.2e-38 162.5 121 65.3
QL03p035827 Quercus lobata HOM05D006178 ORTHO05D007504 3.7e-36 156.4 102 70.6
CARHR026360 Cardamine hirsuta HOM05D006178 ORTHO05D007504 6.4e-36 155.6 120 62.5
Gorai.009G391300 Gossypium raimondii HOM05D006178 ORTHO05D007504 7.8e-34 148.7 105 67.6
AagrBONN_evm.TU.Sc2ySwM_340.423 Anthoceros agrestis HOM05D006178 ORTHO05D007504 1.5e-32 144.4 207 41.5
SEGI_10880 Sequoiadendron giganteum HOM05D006178 ORTHO05D007504 1.5e-32 144.4 185 41.6
Cre16.g653350 Chlamydomonas reinhardtii HOM05D006178 ORTHO05D007504 3.6e-31 139.8 273 34.4
Nn3g18364 Nelumbo nucifera HOM05D006178 ORTHO05D007504 2.9e-28 130.2 112 58.0
Ca_29306_v3 Cicer arietinum L. HOM05D001616 ORTHO05D007504 2.7e-26 123.6 286 31.1
Nn3g18365 Nelumbo nucifera HOM05D006178 ORTHO05D007504 4.7e-23 112.8 65 75.4
Glyma.13G258800 Glycine max HOM05D006178 ORTHO05D007504 4.0e-22 109.8 85 60.0
Glyma.13G368200 Glycine max HOM05D006178 ORTHO05D007504 4.0e-22 109.8 85 60.0
Sed0025662 Sechium edule HOM05D006178 ORTHO05D007504 8.1e-15 85.5 42 85.7
Gohir.D08G060150 Gossypium hirsutum HOM05D006178 ORTHO05D007504 8.1e-07 58.9 40 62.5


User provided reference genes

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