Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 3.2e-155 552.0 332 100.0
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 5.9e-101 371.7 327 61.8
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 2.2e-100 369.8 324 64.8
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 4.7e-98 362.1 331 63.4
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 2.3e-97 359.8 316 62.0
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 1.5e-96 357.1 322 62.4
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 2.6e-96 356.3 327 65.7
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.7e-95 353.6 319 61.1
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 2.2e-95 353.2 321 61.1
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.1e-94 350.9 332 59.0
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.0e-93 346.7 319 59.9
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.0e-92 344.4 226 75.2
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 2.2e-92 343.2 333 60.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 2.9e-92 342.8 335 60.9
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 8.5e-92 341.3 230 71.7
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 3.2e-91 339.3 280 63.2
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 7.2e-91 338.2 316 61.7
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.2e-90 337.4 217 77.0
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.2e-90 337.4 329 59.0
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.4e-89 334.0 298 60.1
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 1.4e-89 334.0 320 62.8
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.8e-89 333.6 233 70.0
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 5.2e-89 332.0 322 67.7
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 5.2e-89 332.0 306 60.8
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.2e-89 332.0 323 57.9
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.2e-89 332.0 328 57.6
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 8.8e-89 331.3 321 57.9
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 8.8e-89 331.3 223 73.5
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 8.8e-89 331.3 306 58.8
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.5e-88 330.5 328 57.3
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.0e-88 330.1 322 69.3
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 2.0e-88 330.1 222 72.1
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 2.0e-88 330.1 306 71.9
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 2.6e-88 329.7 219 74.4
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 2.6e-88 329.7 302 59.6
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 2.6e-88 329.7 230 70.4
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 5.7e-88 328.6 313 58.8
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 7.4e-88 328.2 214 74.8
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.3e-87 327.4 212 74.1
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 1.7e-87 327.0 324 56.2
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.7e-87 327.0 320 67.2
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.7e-87 325.9 332 57.2
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 3.7e-87 325.9 301 59.5
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 4.8e-87 325.5 309 60.2
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 1.4e-86 323.9 299 63.9
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.4e-86 323.9 318 55.7
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.1e-86 322.4 299 57.9
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 7.0e-86 321.6 304 65.8
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 7.0e-86 321.6 223 69.1
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 9.1e-86 321.2 302 58.6
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.6e-85 320.5 316 55.7
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.6e-85 320.5 309 56.3
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 2.0e-85 320.1 299 57.5
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 2.6e-85 319.7 312 68.6
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 4.5e-85 318.9 194 76.8
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 5.9e-85 318.5 322 55.3
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 7.7e-85 318.2 288 71.9
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 5.0e-84 315.5 306 59.2
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 5.0e-84 315.5 305 56.4
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 6.5e-84 315.1 302 58.6
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.5e-83 313.9 269 76.6
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 1.5e-83 313.9 249 66.3
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 2.5e-83 313.2 323 54.8
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 5.5e-83 312.0 202 71.3
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 9.4e-83 311.2 221 71.9
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.6e-82 310.5 364 50.3
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 2.1e-82 310.1 299 57.9
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 3.6e-82 309.3 303 56.1
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 8.0e-82 308.1 225 70.7
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.0e-81 307.8 302 57.0
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.0e-81 307.8 309 63.1
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 1.8e-81 307.0 225 70.2
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 1.8e-81 307.0 330 65.2
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.8e-81 307.0 330 65.2
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 3.0e-81 306.2 227 69.6
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 4.0e-81 305.8 225 69.3
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 4.0e-81 305.8 225 69.3
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 4.0e-81 305.8 312 56.1
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 8.8e-81 304.7 307 64.8
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 8.8e-81 304.7 236 66.1
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.5e-80 303.9 330 64.5
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 7.5e-80 301.6 308 59.7
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 7.5e-80 301.6 240 65.0
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 2.2e-79 300.1 321 54.8
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.2e-79 300.1 301 60.5
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 2.8e-79 299.7 321 65.4
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 4.8e-79 298.9 227 66.1
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 6.3e-79 298.5 225 66.2
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 1.1e-78 297.7 305 53.8
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 1.4e-78 297.4 227 65.6
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 5.3e-78 295.4 322 53.1
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 7.0e-78 295.0 212 69.3
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 2.0e-77 293.5 293 52.6
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 4.5e-77 292.4 319 56.4
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 5.0e-76 288.9 234 63.7
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 5.0e-76 288.9 314 58.6
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 6.5e-76 288.5 310 52.3
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 1.1e-75 287.7 317 65.9
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 4.2e-75 285.8 336 63.4
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 9.4e-75 284.6 300 56.7
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 9.4e-75 284.6 212 67.5
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.2e-74 284.3 268 57.1
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.1e-70 269.2 181 69.6
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 7.7e-69 265.0 241 60.6
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 1.7e-68 263.8 244 58.2
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.5e-67 260.8 154 77.9
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 7.2e-67 258.5 226 58.8
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.5e-64 250.8 161 72.0
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 5.9e-61 238.8 149 81.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.3e-60 237.7 233 53.6
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 8.9e-57 224.9 202 53.5
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 4.9e-55 219.2 292 44.2
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 5.4e-54 215.7 211 51.2
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 9.5e-51 204.9 265 41.1
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 2.9e-47 193.4 135 66.7
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 6.4e-47 192.2 173 61.8
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 9.2e-46 188.3 186 48.9
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.2e-42 177.9 319 37.0
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 1.4e-41 174.5 372 39.0
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.6e-37 161.0 97 78.4
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.6e-37 161.0 99 76.8
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.1e-35 154.8 177 44.1
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.6e-34 149.8 216 37.5
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 8.4e-31 138.7 174 47.7
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.9e-27 127.5 255 33.3
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-26 122.9 214 30.8
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 4.0e-25 119.8 72 77.8
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 4.9e-23 112.8 207 32.4
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.7e-15 87.8 137 40.9
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 7.9e-13 79.0 191 29.3
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.0e-12 77.0 182 28.6
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 6.7e-12 75.9 173 39.9
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 6.7e-12 75.9 65 60.0
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 1.5e-11 74.7 199 29.6
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.3e-10 71.6 163 31.9
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.2e-08 65.1 56 66.1
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 9.9e-08 62.0 98 28.6
MCO12G371 Micromonas commoda HOM05D005493 ORTHO05D049008 3.2e-06 57.0 252 24.2


User provided reference genes

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