Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.7e-177 625.9 332 100.0
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.0e-137 493.8 335 80.9
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 7.9e-122 441.0 341 71.8
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 1.4e-118 430.3 343 71.1
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 2.6e-117 426.0 335 69.0
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 4.5e-117 425.2 302 75.8
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 1.3e-116 423.7 267 82.4
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 2.9e-116 422.5 356 66.3
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 4.9e-116 421.8 264 83.0
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.1e-115 420.6 338 69.2
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 1.1e-115 420.6 348 70.7
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.1e-115 420.6 264 83.0
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 1.9e-115 419.9 337 69.4
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 1.9e-115 419.9 316 70.3
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 3.2e-115 419.1 258 82.6
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 7.1e-115 417.9 334 70.4
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 7.1e-115 417.9 341 67.7
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.7e-114 416.0 347 69.5
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.0e-114 414.8 254 83.1
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 7.9e-114 414.5 334 68.3
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 7.9e-114 414.5 264 81.1
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 3.9e-113 412.1 262 79.8
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 6.7e-113 411.4 338 66.0
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.9e-112 409.8 330 68.2
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.5e-112 409.5 347 67.7
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 3.3e-112 409.1 342 66.4
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 3.3e-112 409.1 346 67.9
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 5.7e-112 408.3 252 81.3
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.3e-111 407.1 260 78.8
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.3e-111 407.1 260 78.8
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 2.2e-111 406.4 341 66.6
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.2e-111 406.4 332 68.1
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 2.8e-111 406.0 351 64.4
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 3.7e-111 405.6 252 81.0
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 4.8e-111 405.2 255 80.0
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 8.2e-111 404.4 303 71.3
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.1e-110 404.1 320 70.3
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 1.5e-109 400.2 326 67.8
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 2.0e-109 399.8 345 65.8
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 2.0e-109 399.8 271 77.5
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.6e-109 399.4 257 77.8
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 2.6e-109 399.4 259 76.8
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 5.9e-109 398.3 304 69.4
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 1.0e-108 397.5 274 77.4
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 1.3e-108 397.1 257 79.4
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 2.2e-108 396.4 347 65.4
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 3.8e-108 395.6 259 78.0
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 5.0e-108 395.2 368 64.9
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 6.5e-108 394.8 259 77.6
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 8.5e-108 394.4 252 77.4
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 8.5e-108 394.4 252 77.8
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 8.5e-108 394.4 254 78.3
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 2.5e-107 392.9 314 67.5
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 3.2e-107 392.5 339 64.9
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 5.5e-107 391.7 345 62.0
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 7.2e-107 391.3 323 66.6
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 9.3e-107 391.0 329 64.4
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 9.3e-107 391.0 245 79.2
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 1.2e-106 390.6 257 77.0
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 1.2e-106 390.6 276 72.5
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 2.7e-106 389.4 307 68.7
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 3.6e-106 389.0 334 63.8
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.8e-105 386.7 311 66.9
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.8e-105 386.7 326 66.0
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 6.7e-105 384.8 313 66.5
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 6.7e-105 384.8 350 65.7
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 4.3e-104 382.1 251 76.1
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 9.7e-104 380.9 254 75.6
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 2.8e-103 379.4 253 75.5
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 3.7e-103 379.0 257 74.3
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 3.7e-103 379.0 256 74.6
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 4.8e-103 378.6 332 63.6
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 8.2e-103 377.9 329 65.0
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.1e-102 377.5 360 61.9
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 1.4e-102 377.1 270 69.3
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.8e-102 376.7 308 66.6
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 5.3e-102 375.2 335 64.8
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 6.9e-102 374.8 279 70.3
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.5e-101 373.6 252 72.6
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.5e-101 373.6 253 74.7
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 1.5e-101 373.6 297 68.0
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 3.4e-101 372.5 341 62.5
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 3.4e-101 372.5 341 62.5
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 5.9e-101 371.7 285 67.0
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 5.9e-101 371.7 340 61.2
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 7.7e-101 371.3 300 67.3
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 1.0e-100 370.9 304 65.8
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.0e-100 370.9 304 65.8
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 3.8e-100 369.0 325 62.5
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 2.5e-99 366.3 252 73.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 9.4e-99 364.4 308 64.6
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 4.4e-96 355.5 290 64.1
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 4.2e-91 339.0 242 69.4
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 5.5e-91 338.6 251 67.7
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 9.4e-91 337.8 251 67.3
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 9.4e-91 337.8 303 60.7
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 4.7e-90 335.5 256 66.0
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 7.0e-86 321.6 220 73.6
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 1.0e-81 307.8 203 75.9
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 2.0e-80 303.5 311 55.6
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 3.5e-77 292.7 314 55.4
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 2.9e-76 289.7 263 60.5
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.9e-68 263.1 280 48.6
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 3.8e-68 262.7 285 49.5
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 6.1e-66 255.4 298 46.6
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 5.2e-65 252.3 165 75.8
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.5e-59 233.4 212 62.3
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 6.8e-57 225.3 238 50.0
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 8.9e-57 224.9 139 79.9
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.2e-55 220.3 233 57.5
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 1.2e-50 204.5 181 61.9
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 3.6e-50 203.0 231 46.8
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 4.0e-49 199.5 250 50.0
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 6.4e-47 192.2 127 78.7
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 8.1e-42 175.3 163 59.5
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 4.4e-40 169.5 181 57.5
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 9.9e-40 168.3 111 73.9
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 3.7e-39 166.4 184 53.3
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.1e-38 164.9 117 69.2
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.6e-36 155.6 110 71.8
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 7.3e-35 152.1 104 70.2
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 4.9e-31 139.4 101 73.3
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.1e-30 138.3 94 72.3
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.4e-30 137.9 126 57.1
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.2e-30 136.7 75 92.0
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 8.7e-28 128.6 120 58.3
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 6.2e-26 122.5 80 73.8
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 2.2e-23 114.0 200 33.0
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 2.9e-23 113.6 71 76.1
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.2e-21 108.2 88 64.8
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.3e-20 104.0 89 66.3
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.6e-20 102.4 92 59.8
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.1e-18 95.5 56 85.7
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 1.1e-17 95.1 50 90.0
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 4.0e-17 93.2 56 78.6
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 4.5e-16 89.7 151 37.7
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.2e-15 87.4 151 35.8
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 8.4e-15 85.5 149 33.6
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 8.4e-15 85.5 99 56.6
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.2e-13 81.6 162 32.7
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 5.6e-11 72.8 143 39.2
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 1.3e-10 71.6 63 61.9
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.1e-10 70.9 42 71.4
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 2.8e-10 70.5 70 60.0


User provided reference genes

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