Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10015353m.g Citrus clementina HOM05D001104 ORTHO05D006624 2.1e-252 875.2 424 100.0
Cpa.g.sc215.8 Carica papaya HOM05D001104 ORTHO05D006624 5.4e-224 780.8 424 85.8
Atru.chr6.2305 Acer truncatum HOM05D001104 ORTHO05D006624 3.5e-223 778.1 424 85.8
TWI12G0063 Tripterygium wilfordii HOM05D001104 ORTHO05D006624 2.3e-219 765.4 424 84.2
Potri.001G348700 Populus trichocarpa HOM05D001104 ORTHO05D006624 1.5e-218 762.7 424 84.7
CiPaw.03G038600 Carya illinoinensis HOM05D001104 ORTHO05D006624 2.6e-218 761.9 424 84.4
Haze_14675 Corylus avellana HOM05D001104 ORTHO05D006624 5.7e-218 760.8 422 84.6
CsaV3_5G027380 Cucumis sativus L. HOM05D001104 ORTHO05D006624 2.4e-216 755.4 426 83.6
Dinv35069 Davidia involucrata HOM05D001104 ORTHO05D006624 7.8e-215 750.4 426 82.2
Prupe.3G285400 Prunus persica HOM05D001104 ORTHO05D006624 6.6e-214 747.3 433 81.1
MELO3C021546.2 Cucumis melo HOM05D001104 ORTHO05D006624 1.5e-213 746.1 426 82.4
Thecc.04G010000 Theobroma cacao HOM05D001104 ORTHO05D006624 9.5e-213 743.4 424 81.8
Sed0005946 Sechium edule HOM05D001104 ORTHO05D006624 1.2e-212 743.0 424 81.4
Dinv33487 Davidia involucrata HOM05D001104 ORTHO05D006624 1.8e-211 739.2 424 81.4
CSS0039746 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 2.3e-211 738.8 426 81.5
Duzib147G0036 Durio zibethinus HOM05D001104 ORTHO05D006624 5.7e-210 734.2 423 79.7
Hma1.2p1_0993F.1_g245480 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 5.7e-210 734.2 426 80.8
CSS0024274 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 8.3e-209 730.3 430 80.5
MD17G1034200 Malus domestica HOM05D001104 ORTHO05D006624 1.1e-208 729.9 445 76.2
Actinidia35743 Actinidia chinensis HOM05D001104 ORTHO05D006624 1.0e-206 723.4 425 79.5
Cc07_g02180 Coffea canephora HOM05D001104 ORTHO05D006624 1.3e-206 723.0 426 79.6
Rhsim10G0021500 Rhododendron simsii HOM05D001104 ORTHO05D006624 3.0e-206 721.8 426 79.1
Eucgr.I01793 Eucalyptus grandis HOM05D001104 ORTHO05D006624 1.5e-205 719.5 427 79.6
Gorai.001G262300 Gossypium raimondii HOM05D001104 ORTHO05D006624 1.5e-205 719.5 424 78.5
TAR374G1405 Trochodendron aralioides HOM05D001104 ORTHO05D006624 3.3e-205 718.4 424 78.3
Actinidia06020 Actinidia chinensis HOM05D001104 ORTHO05D006624 5.6e-205 717.6 424 79.7
Oeu062922.1 Olea europaea HOM05D001104 ORTHO05D006624 2.8e-204 715.3 426 78.4
MSTRG.15512 Avicennia marina HOM05D001104 ORTHO05D006624 1.8e-203 712.6 426 77.5
Solyc02g067740.4 Solanum lycopersicum HOM05D001104 ORTHO05D006624 6.8e-203 710.7 427 78.5
Gohir.A07G220700 Gossypium hirsutum HOM05D001104 ORTHO05D006624 8.9e-203 710.3 424 77.6
Nitab4.5_0001709g0040 Nicotiana tabacum HOM05D001104 ORTHO05D006624 1.2e-202 709.9 426 77.5
PGSC0003DMG400006955 Solanum tuberosum HOM05D001104 ORTHO05D006624 1.2e-202 709.9 427 78.7
Sopen02g016860 Solanum pennellii HOM05D001104 ORTHO05D006624 1.3e-201 706.4 427 78.0
COL.COLO4_28978 Corchorus olitorius HOM05D001104 ORTHO05D006624 2.9e-201 705.3 448 75.4
CAN.G973.9 Capsicum annuum HOM05D001104 ORTHO05D006624 6.4e-201 704.1 426 77.5
Cfa007422 Carpinus fangiana HOM05D001104 ORTHO05D006624 3.2e-200 701.8 388 85.1
Migut.H00115 Erythranthe guttata HOM05D001104 ORTHO05D006624 9.2e-200 700.3 427 76.8
QL02p076349 Quercus lobata HOM05D001104 ORTHO05D006624 1.0e-198 696.8 423 77.1
GSVIVG01032469001 Vitis vinifera HOM05D001104 ORTHO05D006624 1.0e-198 696.8 424 76.2
Nn4g22776 Nelumbo nucifera HOM05D001104 ORTHO05D006624 2.3e-198 695.7 425 75.5
ClCG09G018970 Citrullus lanatus HOM05D001104 ORTHO05D006624 3.9e-198 694.9 476 71.0
RcHm_v2.0_Chr2g0171701 Rosa chinensis HOM05D001104 ORTHO05D006624 8.6e-198 693.7 439 73.8
CANSAT64G0855 Cannabis sativa HOM05D001104 ORTHO05D006624 1.5e-197 693.0 424 76.2
MD09G1032600 Malus domestica HOM05D001104 ORTHO05D006624 5.6e-197 691.0 446 73.8
vmacro05831 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 2.3e-195 685.6 434 75.3
HanXRQChr14g0450311 Helianthus annuus HOM05D001104 ORTHO05D006624 1.5e-194 682.9 426 74.2
arahy.Tifrunner.gnm1.ann1.PA6DSG Arachis hypogaea HOM05D001104 ORTHO05D006624 5.8e-194 681.0 426 74.4
FAN05G2035 Fragaria x ananassa HOM05D001104 ORTHO05D006624 9.9e-194 680.2 440 73.2
FAN14G0697 Fragaria x ananassa HOM05D001104 ORTHO05D006624 4.9e-193 677.9 440 72.7
FvH4_6g50760 Fragaria vesca HOM05D001104 ORTHO05D006624 1.9e-192 676.0 440 72.5
Lj7C592G4 Lonicera japonica HOM05D001104 ORTHO05D006624 1.7e-190 669.5 426 74.6
Medtr6g007040 Medicago truncatula HOM05D001104 ORTHO05D006624 3.0e-190 668.7 417 75.1
PSO478G3469 Papaver somniferum HOM05D001104 ORTHO05D006624 3.9e-190 668.3 428 75.7
arahy.Tifrunner.gnm1.ann1.S5BZSG Arachis hypogaea HOM05D001104 ORTHO05D006624 4.3e-189 664.8 446 70.9
PGR142G0881 Punica granatum HOM05D001104 ORTHO05D006624 4.3e-189 664.8 421 74.8
ECA238G2799 Erigeron canadensis HOM05D001104 ORTHO05D006624 5.6e-189 664.5 423 72.1
SalBow1G5303 Salvia bowleyana HOM05D001104 ORTHO05D006624 2.1e-188 662.5 428 73.4
Phvul.004G013700 Phaseolus vulgaris HOM05D001104 ORTHO05D006624 6.2e-188 661.0 417 74.8
VMungo0464G0407 Vigna mungo HOM05D001104 ORTHO05D006624 8.1e-188 660.6 427 72.4
Glyma.19G007900 Glycine max HOM05D001104 ORTHO05D006624 1.1e-187 660.2 428 73.4
Peaxi162Scf00933g00005 Petunia axillaris HOM05D001104 ORTHO05D006624 1.1e-187 660.2 392 77.6
ECA232G2826 Erigeron canadensis HOM05D001104 ORTHO05D006624 5.2e-187 657.9 416 71.6
Hma1.2p1_3249F.1_g334430 Hydrangea macrophylla HOM05D001104 ORTHO05D006624 6.8e-187 657.5 394 77.7
Gohir.D07G227400 Gossypium hirsutum HOM05D001104 ORTHO05D006624 5.8e-186 654.4 394 77.2
THA.LOC104825337 Tarenaya hassleriana HOM05D001104 ORTHO05D006624 4.9e-185 651.4 427 71.9
Sp2g16980 Schrenkiella parvula HOM05D001104 ORTHO05D006624 1.2e-183 646.7 426 72.3
BcaC06g30950 Brassica carinata HOM05D001104 ORTHO05D006624 4.6e-183 644.8 427 72.4
HanXRQChr09g0266171 Helianthus annuus HOM05D001104 ORTHO05D006624 4.6e-183 644.8 412 71.8
Aqoxy3G01030 Aquilegia oxysepala HOM05D001104 ORTHO05D006624 3.0e-182 642.1 423 72.6
Ca_04192_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006624 5.1e-182 641.3 425 72.2
BcaC06g33770 Brassica carinata HOM05D001104 ORTHO05D006624 1.9e-181 639.4 426 71.6
C07p37130 Brassica napus HOM05D001104 ORTHO05D006624 1.9e-181 639.4 426 71.6
Lj2g0012499 Lotus japonicus HOM05D001104 ORTHO05D006624 1.9e-181 639.4 428 71.5
Thhalv10004293m.g Eutrema salsugineum HOM05D001104 ORTHO05D006624 1.1e-179 633.6 425 72.5
Lalb_Chr06g0176011 Lupinus albus HOM05D001104 ORTHO05D006624 1.8e-179 632.9 433 69.1
PSO017G6424 Papaver somniferum HOM05D001104 ORTHO05D006624 9.0e-179 630.6 428 72.2
DCAR_011201 Daucus carota HOM05D001104 ORTHO05D006624 4.4e-178 628.2 395 73.7
MBI16_g05636_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006624 2.1e-172 609.4 394 71.3
CARHR149500 Cardamine hirsuta HOM05D001104 ORTHO05D006624 3.6e-172 608.6 430 67.9
AL5G17430 Arabidopsis lyrata HOM05D001104 ORTHO05D006624 6.2e-172 607.8 426 68.3
DCAR_015045 Daucus carota HOM05D001104 ORTHO05D006624 3.1e-171 605.5 473 62.8
FAN02G3192 Fragaria x ananassa HOM05D001104 ORTHO05D006624 5.3e-171 604.7 495 61.4
Carub.0005s0650 Capsella rubella HOM05D001104 ORTHO05D006624 1.2e-170 603.6 425 67.8
AT3G27930 Arabidopsis thaliana HOM05D001104 ORTHO05D006624 1.5e-170 603.2 426 68.5
SGA_v2.0_scaffold135G34875 Striga asiatica HOM05D001104 ORTHO05D006624 4.5e-170 601.7 370 77.6
EL10Ac4g08579 Beta vulgaris HOM05D001104 ORTHO05D006624 1.4e-168 596.7 424 67.0
ATR0730G148 Amborella trichopoda HOM05D001104 ORTHO05D006624 4.2e-168 595.1 422 66.4
Lsat_1_v5_gn_4_182480 Lactuca sativa HOM05D001104 ORTHO05D006624 5.1e-166 588.2 420 65.7
Manes.17G117000 Manihot esculenta HOM05D001104 ORTHO05D006624 5.1e-166 588.2 424 68.2
CSS0016338 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 7.6e-162 574.3 456 65.4
Aa31LG2G4840 Aethionema arabicum HOM05D001104 ORTHO05D006285 2.2e-161 572.8 381 72.2
Sc03g0007930 Simmondsia chinensis HOM05D001104 ORTHO05D006624 2.4e-160 569.3 343 77.3
Os05g0577800 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 4.3e-157 558.5 421 62.2
CDE06G1183 Ceratophyllum demersum HOM05D001104 ORTHO05D006624 1.1e-152 543.9 424 62.0
vmacro18250 Vaccinium macrocarpon HOM05D001104 ORTHO05D006624 1.1e-149 533.9 425 62.8
Oeu043054.1 Olea europaea HOM05D001104 ORTHO05D006285 4.3e-149 531.9 382 67.8
Nitab4.5_0001125g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006624 7.4e-149 531.2 431 61.9
HPP92_024321 Vanilla planifolia HOM05D001104 ORTHO05D006285 4.5e-146 521.9 356 68.3
CSS0012459 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006624 1.5e-141 506.9 435 61.1
BcaC03g17495 Brassica carinata HOM05D001104 ORTHO05D006624 6.3e-140 501.5 406 62.6
Psat1g057160 Pisum sativum HOM05D001104 ORTHO05D006624 6.7e-134 481.5 302 74.5
unitig_899.g15491 Utricularia gibba HOM05D000928 ORTHO05D001186 1.0e-129 467.6 401 56.9
AUR62029365 Chenopodium quinoa HOM05D001104 ORTHO05D006624 2.1e-127 459.9 426 55.4
Os05g0577900 Oryza sativa ssp. japonica HOM05D001104 ORTHO05D006624 6.5e-121 438.3 420 51.9
A06p40770 Brassica napus HOM05D001104 ORTHO05D006624 3.2e-120 436.0 289 72.7
BolC7t44224H Brassica oleracea HOM05D001104 ORTHO05D006624 5.5e-120 435.3 288 72.6
AUR62043218 Chenopodium quinoa HOM05D001104 ORTHO05D006624 7.2e-120 434.9 424 54.7
BraA06t26998Z Brassica rapa HOM05D001104 ORTHO05D006624 1.2e-119 434.1 288 72.6
Rhsim08G0054100 Rhododendron simsii HOM05D001104 ORTHO05D006285 2.7e-119 433.0 423 55.3
C02p54520 Brassica napus HOM05D001104 ORTHO05D006624 1.8e-118 430.3 433 54.0
AagrBONN_evm.TU.Sc2ySwM_340.221 Anthoceros agrestis HOM05D001104 ORTHO05D006624 5.9e-114 415.2 434 48.4
C02p54570 Brassica napus HOM05D001104 ORTHO05D006624 5.9e-114 415.2 455 51.4
Pp3c25_9610 Physcomitrium patens HOM05D001104 ORTHO05D006624 1.0e-102 377.9 431 46.6
BolC2t11515H Brassica oleracea HOM05D001104 ORTHO05D006624 4.4e-101 372.5 633 37.6
HanXRQChr06g0175561 Helianthus annuus HOM05D001104 ORTHO05D006624 1.0e-94 351.3 276 61.6
Zm00001eb344500 Zea mays HOM05D001104 ORTHO05D006624 1.0e-94 351.3 269 61.7
TPR.G2265 Trifolium pratense HOM05D001104 ORTHO05D006624 9.5e-88 328.2 198 74.2
Hund10304 Selenicereus undatus HOM05D001104 ORTHO05D006624 1.6e-87 327.4 265 60.4
A02p35680 Brassica napus HOM05D001104 ORTHO05D006624 6.2e-87 325.5 698 32.8
BraA02t08571Z Brassica rapa HOM05D001104 ORTHO05D006624 2.1e-63 247.3 541 33.3
BolC2t11520H Brassica oleracea HOM05D001104 ORTHO05D006624 3.2e-59 233.4 327 44.0
Psat0s3401g0080 Pisum sativum HOM05D001104 ORTHO05D006624 3.5e-58 229.9 145 74.5
Cfa008567 Carpinus fangiana HOM05D001104 ORTHO05D006624 1.7e-57 227.6 161 69.6
A06p40780 Brassica napus HOM05D001104 ORTHO05D006624 6.9e-46 189.1 122 71.3
BraA02t08570Z Brassica rapa HOM05D001104 ORTHO05D006624 4.6e-42 176.4 116 69.0
SEGI_13753 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 6.2e-39 166.0 147 51.7
Oeu043225.1 Olea europaea HOM05D003428 ORTHO05D006624 4.5e-37 159.8 288 35.8
Oeu051906.1 Olea europaea HOM05D003428 ORTHO05D006624 1.3e-36 158.3 288 35.8
Psat1g219520 Pisum sativum HOM05D001104 ORTHO05D006624 3.0e-33 147.1 112 63.4
Glyma.05G007402 Glycine max HOM05D001104 ORTHO05D006624 2.5e-32 144.1 89 77.5
Actinidia36089 Actinidia chinensis HOM05D001104 ORTHO05D006624 3.9e-25 120.2 76 76.3
Thecc.04G111800 Theobroma cacao HOM05D001104 ORTHO05D006624 6.7e-25 119.4 85 64.7
Cfa008566 Carpinus fangiana HOM05D001104 ORTHO05D006624 5.0e-20 103.2 58 84.5
BcaB07g30139 Brassica carinata HOM05D001104 ORTHO05D006624 4.7e-18 96.7 67 71.6
Cre08.g358552 Chlamydomonas reinhardtii HOM05D001104 ORTHO05D006624 3.1e-14 84.0 462 23.2
HanXRQChr16g0517041 Helianthus annuus HOM05D001104 ORTHO05D006624 4.1e-14 83.6 56 62.5
SEGI_37884 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.5e-13 81.6 91 42.9
TPR.G18830 Trifolium pratense HOM05D001104 ORTHO05D006624 1.8e-09 68.2 44 72.7
SEGI_12261 Sequoiadendron giganteum HOM05D001104 ORTHO05D006624 1.1e-08 65.5 92 41.3
Sopen07g006450 Solanum pennellii HOM05D001104 ORTHO05D006624 4.1e-06 57.0 43 53.5


User provided reference genes

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