Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1217.6 630 100.0
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1152.9 647 92.0
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1102.8 647 85.6
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1101.3 647 86.2
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1096.3 647 86.1
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1095.1 646 85.6
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1094.0 647 85.3
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1092.4 647 85.3
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1092.0 647 85.9
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1091.3 647 85.3
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1090.5 645 85.4
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1089.7 647 84.9
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1088.9 647 85.8
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1087.8 647 85.0
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1085.9 647 84.4
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1084.3 647 84.5
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1083.2 641 86.0
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1083.2 646 85.0
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1083.2 647 84.5
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1082.8 647 83.8
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1082.4 641 85.3
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1082.0 647 85.0
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1081.6 643 84.9
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1081.2 647 84.1
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1080.9 657 83.7
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1080.5 644 84.6
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1079.7 646 84.5
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1079.3 647 84.1
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1078.9 647 84.1
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1077.8 645 84.5
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1077.4 643 84.9
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1077.0 644 84.8
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1075.8 647 83.9
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1075.5 647 84.1
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1075.5 643 84.8
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1075.1 643 84.8
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1075.1 647 84.1
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 4.3e-312 1073.9 647 83.6
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 1.7e-311 1072.0 647 83.8
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 3.0e-311 1071.2 647 83.8
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 3.9e-311 1070.8 647 84.2
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 5.2e-311 1070.5 641 83.8
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 6.5e-311 1070.1 647 83.6
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 8.6e-311 1069.7 646 84.1
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 1.1e-310 1069.3 646 83.7
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 1.1e-310 1069.3 644 83.7
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.5e-310 1068.9 643 84.1
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 1.9e-310 1068.5 646 83.0
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 3.3e-310 1067.8 647 84.2
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 5.6e-310 1067.0 647 83.6
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 9.5e-310 1066.2 647 83.5
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.6e-309 1065.4 647 83.3
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 6.1e-309 1063.5 632 84.5
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 6.1e-309 1063.5 640 83.6
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 8.0e-309 1063.1 644 83.4
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 8.0e-309 1063.1 645 82.8
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 1.0e-308 1062.8 643 83.5
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 1.4e-308 1062.4 643 83.5
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 1.8e-308 1062.0 645 82.9
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 4.0e-308 1060.8 643 83.2
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 5.2e-308 1060.4 646 82.8
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 6.8e-308 1060.1 646 81.9
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 8.9e-308 1059.7 641 83.2
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 1.2e-307 1059.3 647 82.1
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 1.5e-307 1058.9 644 82.9
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 1.5e-307 1058.9 641 83.6
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 2.6e-307 1058.1 638 83.9
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 4.4e-307 1057.4 647 83.2
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 5.8e-307 1057.0 643 82.9
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 1.3e-306 1055.8 640 83.3
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 1.7e-306 1055.4 647 82.8
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 4.9e-306 1053.9 640 83.0
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 2.4e-305 1051.6 640 83.0
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 4.1e-305 1050.8 674 80.0
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 5.4e-305 1050.4 640 83.0
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 5.4e-305 1050.4 640 83.0
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 5.4e-305 1050.4 640 83.0
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 7.0e-305 1050.0 640 83.0
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 1.6e-304 1048.9 647 82.7
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 2.0e-304 1048.5 640 82.5
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 2.7e-304 1048.1 640 82.8
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 3.5e-304 1047.7 642 83.5
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 6.0e-304 1047.0 640 82.7
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 7.8e-304 1046.6 646 82.2
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 1.7e-303 1045.4 647 81.5
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 3.9e-303 1044.3 647 82.1
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 3.9e-303 1044.3 642 82.7
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 8.6e-303 1043.1 644 81.8
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 1.9e-302 1042.0 640 81.4
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 9.5e-302 1039.6 640 81.4
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 1.6e-301 1038.9 640 82.3
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 2.8e-301 1038.1 644 81.4
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 1.8e-300 1035.4 640 81.7
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 3.1e-300 1034.6 642 80.7
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 8.9e-300 1033.1 640 81.1
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 8.9e-300 1033.1 642 80.5
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 5.4e-297 1023.8 646 80.0
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 8.9e-292 1006.5 640 79.5
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 1.1e-289 999.6 638 78.4
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 2.1e-288 995.3 638 78.2
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 2.8e-285 984.9 638 77.1
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 1.5e-283 979.2 592 83.3
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 1.5e-275 952.6 641 74.6
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 1.1e-270 936.4 551 86.4
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 1.9e-265 919.1 642 72.4
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 1.9e-262 909.1 534 85.2
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 9.0e-260 900.2 534 84.1
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 3.3e-254 881.7 633 72.0
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 3.9e-247 858.2 658 68.5
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 2.8e-245 852.0 639 69.2
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 1.4e-244 849.7 509 84.1
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 7.2e-241 837.4 659 66.8
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 1.6e-232 809.7 632 69.8
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.3e-226 790.0 503 80.3
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 6.1e-224 781.2 503 79.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.8e-223 779.6 633 68.2
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.1e-217 760.4 507 76.5
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 3.0e-215 752.3 651 61.6
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 1.3e-202 710.3 648 58.0
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 1.6e-195 686.8 432 81.0
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.3e-177 625.5 532 64.1
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 2.3e-162 576.6 653 50.1
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 7.3e-161 571.6 446 68.6
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 3.6e-160 569.3 421 71.7
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 4.0e-159 565.8 354 80.8
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 9.3e-156 554.7 325 87.1
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 4.8e-144 515.8 306 84.6
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 4.2e-132 476.1 281 86.1
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 7.0e-103 379.0 510 42.7
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.0e-93 348.6 211 83.4
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 3.3e-84 317.0 250 66.8
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 4.9e-80 303.1 194 80.4
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 1.3e-77 295.0 231 68.4
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 5.4e-71 273.1 173 79.2
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.9e-68 264.6 173 77.5
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 3.1e-66 257.3 635 32.9
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 3.3e-60 237.3 261 51.3
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 8.6e-53 212.6 223 57.4
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 4.0e-42 177.2 114 80.7
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 7.1e-39 166.4 99 80.8
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 1.2e-38 165.6 104 75.0
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.5e-36 158.7 114 71.9
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 2.5e-36 157.9 169 53.8
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.3e-35 155.6 90 85.6
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 4.2e-31 140.6 86 79.1
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 5.5e-31 140.2 90 77.8
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 6.0e-30 136.7 90 75.6
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.3e-29 135.6 157 51.0
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 7.6e-25 119.8 73 76.7
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 1.5e-20 105.5 116 51.7
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 1.9e-20 105.1 53 96.2
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 1.2e-17 95.9 70 65.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.7e-16 92.0 53 79.2
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.1e-15 89.4 49 83.7
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 6.1e-14 83.6 63 61.9
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 3.9e-13 80.9 60 68.3
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 8.5e-08 63.2 66 51.5


User provided reference genes

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