Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014585m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1259.6 637 100.0
Dinv36331 Davidia involucrata HOM05D004629 ORTHO05D006604 0.0e+00 1192.6 637 92.8
QL01p010068 Quercus lobata HOM05D004629 ORTHO05D006604 0.0e+00 1186.0 636 92.0
CiPaw.13G171100 Carya illinoinensis HOM05D004629 ORTHO05D006604 0.0e+00 1184.9 637 91.2
Manes.03G089535 Manihot esculenta HOM05D004629 ORTHO05D006604 0.0e+00 1183.3 637 92.2
CANSAT11G0664 Cannabis sativa HOM05D004629 ORTHO05D006604 0.0e+00 1182.9 637 91.5
Potri.003G215100 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1181.8 637 91.7
Duzib128G1447 Durio zibethinus HOM05D004629 ORTHO05D006604 0.0e+00 1181.4 637 91.5
Actinidia06301 Actinidia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1179.1 637 92.0
Potri.001G010800 Populus trichocarpa HOM05D004629 ORTHO05D006604 0.0e+00 1179.1 637 91.4
Thecc.10G155600 Theobroma cacao HOM05D004629 ORTHO05D006604 0.0e+00 1178.7 635 91.7
VMungo0720G3137 Vigna mungo HOM05D004629 ORTHO05D006604 0.0e+00 1178.3 637 90.7
CsaV3_1G042270 Cucumis sativus L. HOM05D004629 ORTHO05D006604 0.0e+00 1177.5 637 92.0
Atru.chr3.2163_Atru.chr3.2169 Acer truncatum HOM05D004629 ORTHO05D006604 0.0e+00 1175.2 631 91.9
MELO3C015653.2 Cucumis melo HOM05D004629 ORTHO05D006604 0.0e+00 1172.9 633 92.1
Glyma.20G243700 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1172.1 637 90.3
Phvul.007G006400 Phaseolus vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1172.1 637 90.0
Lj5g0025778 Lotus japonicus HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 637 90.1
Rhsim01G0186400 Rhododendron simsii HOM05D004629 ORTHO05D006604 0.0e+00 1171.0 637 90.6
Cfa009633 Carpinus fangiana HOM05D004629 ORTHO05D006604 0.0e+00 1170.2 637 91.1
Sabra03G0160400 Salix brachista HOM05D004629 ORTHO05D006604 0.0e+00 1170.2 647 89.8
arahy.Tifrunner.gnm1.ann1.MLY2RP Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1169.8 637 90.4
Prupe.6G013000 Prunus persica HOM05D004629 ORTHO05D006604 0.0e+00 1168.7 636 90.6
MBI13_g20490_MAGBIO Magnolia biondii HOM05D004629 ORTHO05D006604 0.0e+00 1168.3 637 90.1
Lalb_Chr06g0164051 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1167.9 637 90.1
arahy.Tifrunner.gnm1.ann1.XFL7KU Arachis hypogaea HOM05D004629 ORTHO05D006604 0.0e+00 1166.4 637 90.1
Sed0008832 Sechium edule HOM05D004629 ORTHO05D006604 0.0e+00 1166.4 636 90.6
MD11G1015100 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1164.8 635 90.4
Gohir.A05G400500 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1164.4 637 90.6
Cc01_g02770 Coffea canephora HOM05D004629 ORTHO05D006604 0.0e+00 1164.1 633 90.7
Oeu038860.1 Olea europaea HOM05D004629 ORTHO05D006604 0.0e+00 1163.3 634 90.7
Nitab4.5_0005132g0060 Nicotiana tabacum HOM05D004629 ORTHO05D006604 0.0e+00 1162.5 633 90.7
Haze_23000 Corylus avellana HOM05D004629 ORTHO05D006604 0.0e+00 1162.1 633 90.8
Gorai.012G017900 Gossypium raimondii HOM05D004629 ORTHO05D006604 0.0e+00 1161.4 637 90.3
TWI60G1346 Tripterygium wilfordii HOM05D004629 ORTHO05D006604 0.0e+00 1161.4 637 89.8
SGA_v2.0_scaffold1G00754 Striga asiatica HOM05D004629 ORTHO05D006604 0.0e+00 1160.6 634 90.2
PGR119G2006 Punica granatum HOM05D004629 ORTHO05D006604 0.0e+00 1160.2 634 90.1
Gohir.D04G015400 Gossypium hirsutum HOM05D004629 ORTHO05D006604 0.0e+00 1159.4 637 90.1
FAN11G0302 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1158.3 637 89.6
MSTRG.18392 Avicennia marina HOM05D004629 ORTHO05D006604 0.0e+00 1157.5 633 90.0
EL10Ac4g10337 Beta vulgaris HOM05D004629 ORTHO05D006604 0.0e+00 1157.5 637 89.3
Glyma.10G293800 Glycine max HOM05D004629 ORTHO05D006604 0.0e+00 1157.5 631 89.9
RcHm_v2.0_Chr5g0081161 Rosa chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1157.1 637 89.5
MD03G1012400 Malus domestica HOM05D004629 ORTHO05D006604 0.0e+00 1156.7 636 89.9
SalBow2G2882 Salvia bowleyana HOM05D004629 ORTHO05D006604 0.0e+00 1156.4 633 90.2
ClCG03G013940 Citrullus lanatus HOM05D004629 ORTHO05D006604 0.0e+00 1155.6 637 90.3
Ca_11347_v3 Cicer arietinum L. HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 636 89.0
Eucgr.B02610 Eucalyptus grandis HOM05D004629 ORTHO05D006604 0.0e+00 1155.2 636 89.3
TPR.G10403 Trifolium pratense HOM05D004629 ORTHO05D006604 0.0e+00 1154.8 635 89.3
Hund21652 Selenicereus undatus HOM05D004629 ORTHO05D006604 0.0e+00 1154.0 637 89.6
FAN25G1401 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1152.5 637 89.2
Ciclev10014598m.g Citrus clementina HOM05D004629 ORTHO05D006604 0.0e+00 1152.1 647 92.0
Sopen01g002270 Solanum pennellii HOM05D004629 ORTHO05D006604 0.0e+00 1151.3 633 89.4
Medtr1g116140 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 636 88.4
Solyc01g006280.3 Solanum lycopersicum HOM05D004629 ORTHO05D006604 0.0e+00 1151.0 633 89.4
Thhalv10011315m.g Eutrema salsugineum HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 630 89.2
Sc09g0000300 Simmondsia chinensis HOM05D004629 ORTHO05D006604 0.0e+00 1150.6 637 89.2
AL1G58130 Arabidopsis lyrata HOM05D004629 ORTHO05D006604 0.0e+00 1150.2 634 89.0
Ah.04g161630 Amaranthus hybridus HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 636 88.7
PGSC0003DMG400032146 Solanum tuberosum HOM05D004629 ORTHO05D006604 0.0e+00 1149.8 633 89.3
Lalb_Chr02g0143781 Lupinus albus HOM05D004629 ORTHO05D006604 0.0e+00 1148.7 637 88.1
Peaxi162Scf00192g00022 Petunia axillaris HOM05D004629 ORTHO05D006604 0.0e+00 1147.9 628 90.4
Carub.0001s3955 Capsella rubella HOM05D004629 ORTHO05D006604 0.0e+00 1146.7 635 88.3
AT1G50480 Arabidopsis thaliana HOM05D004629 ORTHO05D006604 0.0e+00 1146.0 634 88.5
FAN16G0373 Fragaria x ananassa HOM05D004629 ORTHO05D006604 0.0e+00 1145.6 631 89.5
PSO384G3664 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1143.3 637 89.0
PSO339G6259 Papaver somniferum HOM05D004629 ORTHO05D006604 0.0e+00 1141.3 637 88.7
CARHR040480 Cardamine hirsuta HOM05D004629 ORTHO05D006604 0.0e+00 1140.9 630 88.6
Sp1g37320 Schrenkiella parvula HOM05D004629 ORTHO05D006604 0.0e+00 1140.6 630 88.7
DCAR_024372 Daucus carota HOM05D004629 ORTHO05D006604 0.0e+00 1139.4 631 88.4
Migut.N02273 Erythranthe guttata HOM05D004629 ORTHO05D006604 0.0e+00 1138.6 633 88.5
AUR62000039 Chenopodium quinoa HOM05D004629 ORTHO05D006604 0.0e+00 1137.9 664 85.2
BcaC08g43218 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 630 88.6
C06p05660 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 630 88.6
BolC6t35677H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1137.5 630 88.6
BraA06t23523Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1137.1 630 88.6
Aa31LG10G3810 Aethionema arabicum HOM05D004629 ORTHO05D006604 0.0e+00 1136.3 630 88.4
THA.LOC104806618 Tarenaya hassleriana HOM05D004629 ORTHO05D006604 0.0e+00 1135.6 630 88.1
A06p03100 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 630 88.4
CSS0018441 Camellia sinensis var. sinensis HOM05D004629 ORTHO05D006604 0.0e+00 1135.2 637 88.9
BcaB07g33484 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1134.0 630 88.3
TAR369G0186 Trochodendron aralioides HOM05D004629 ORTHO05D006604 0.0e+00 1130.2 632 89.1
Aqoxy2G00099 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 0.0e+00 1129.4 636 88.1
ATR0598G234 Amborella trichopoda HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 637 88.1
HanXRQChr07g0196791 Helianthus annuus HOM05D004629 ORTHO05D006604 0.0e+00 1128.6 632 88.4
HPP92_005763 Vanilla planifolia HOM05D004629 ORTHO05D006604 0.0e+00 1124.8 637 87.1
BcaB02g11151 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 630 86.7
BolC5t32091H Brassica oleracea HOM05D004629 ORTHO05D006604 0.0e+00 1124.4 630 86.8
BraA05t20921Z Brassica rapa HOM05D004629 ORTHO05D006604 0.0e+00 1122.5 632 86.6
CAN.G140.2 Capsicum annuum HOM05D004629 ORTHO05D006604 0.0e+00 1122.1 633 87.7
ECA238G3810 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1121.7 630 87.9
Zm00001eb314490 Zea mays HOM05D004629 ORTHO05D006604 0.0e+00 1120.5 634 87.2
BcaC05g27413 Brassica carinata HOM05D004629 ORTHO05D006604 0.0e+00 1120.1 630 86.7
Lsat_1_v5_gn_2_101421 Lactuca sativa HOM05D004629 ORTHO05D006604 0.0e+00 1119.8 630 87.5
A05p20130 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1118.6 632 86.1
Os09g0446800 Oryza sativa ssp. japonica HOM05D004629 ORTHO05D006604 0.0e+00 1117.8 634 86.9
Medtr5g059390 Medicago truncatula HOM05D004629 ORTHO05D006604 0.0e+00 1114.8 636 86.5
C05p33610 Brassica napus HOM05D004629 ORTHO05D006604 0.0e+00 1092.4 630 85.1
ECA248G3511 Erigeron canadensis HOM05D004629 ORTHO05D006604 0.0e+00 1076.2 628 83.9
HanXRQChr11g0344961 Helianthus annuus HOM05D004629 ORTHO05D006604 4.4e-312 1074.7 628 83.6
Nitab4.5_0008074g0010 Nicotiana tabacum HOM05D004629 ORTHO05D006604 3.1e-311 1071.2 582 90.2
Lsat_1_v5_gn_1_68420 Lactuca sativa HOM05D004629 ORTHO05D006604 1.4e-308 1062.4 628 82.5
Pp3c15_21130 Physcomitrium patens HOM05D004629 ORTHO05D006604 4.0e-300 1034.2 631 80.0
Mapoly0009s0223 Marchantia polymorpha HOM05D004629 ORTHO05D006604 3.8e-290 1001.1 632 78.2
Nn7g35984 Nelumbo nucifera HOM05D004629 ORTHO05D006604 8.4e-290 1000.0 541 92.2
Lj2A677T24 Lonicera japonica HOM05D004629 ORTHO05D006604 4.5e-283 977.6 534 90.1
AUR62019209 Chenopodium quinoa HOM05D004629 ORTHO05D006604 1.9e-281 972.2 534 88.8
Psat6g238880 Pisum sativum HOM05D004629 ORTHO05D006604 1.5e-270 936.0 635 75.3
CBR_g29353 Chara braunii HOM05D004629 ORTHO05D006604 4.4e-270 934.5 648 73.1
Cre13.g566000 Chlamydomonas reinhardtii HOM05D004629 ORTHO05D006604 1.3e-269 932.9 629 74.4
FvH4_3g44470 Fragaria vesca HOM05D004629 ORTHO05D006604 5.2e-263 911.0 499 90.2
SMO364G0493 Selaginella moellendorffii HOM05D004629 ORTHO05D006604 1.1e-260 903.3 649 71.2
Oeu046515.2 Olea europaea HOM05D004629 ORTHO05D006604 8.5e-250 867.1 634 72.7
vmacro16237 Vaccinium macrocarpon HOM05D004629 ORTHO05D006604 1.7e-245 852.8 503 84.7
Cfa009637 Carpinus fangiana HOM05D004629 ORTHO05D006604 4.8e-245 851.3 503 84.5
GSVIVG01025376001 Vitis vinifera HOM05D004629 ORTHO05D006604 1.7e-242 842.8 635 71.5
MCO09G252 Micromonas commoda HOM05D004629 ORTHO05D006604 1.2e-235 820.1 641 65.5
AagrBONN_evm.TU.Sc2ySwM_117.3293 Anthoceros agrestis HOM05D004629 ORTHO05D006604 1.5e-233 813.1 497 81.3
Cfa022255 Carpinus fangiana HOM05D004629 ORTHO05D006604 6.8e-223 777.7 638 62.1
unitig_22.g5473 Utricularia gibba HOM05D004629 ORTHO05D006604 1.2e-203 713.8 444 81.1
CDE05G3086 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.8e-191 673.3 533 67.5
Haze_26090 Corylus avellana HOM05D004629 ORTHO05D006604 5.8e-182 641.7 643 53.3
CDE05G1958 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 6.7e-178 628.2 446 73.1
CDE05G1726 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 8.2e-176 621.3 354 86.7
CDE05G0953 Ceratophyllum demersum HOM05D004629 ORTHO05D006604 1.6e-168 597.0 411 75.7
Cpa.g.sc119.97 Carica papaya HOM05D004629 ORTHO05D006604 2.1e-163 580.1 315 92.4
Glyma.10G112700 Glycine max HOM05D004629 ORTHO05D006604 1.4e-151 540.8 296 90.2
BcaB02g11149 Brassica carinata HOM05D004629 ORTHO05D006604 1.8e-138 497.3 271 91.5
PRCOL_00001239 Prasinoderma coloniale HOM05D004629 ORTHO05D006604 1.8e-114 417.5 527 43.6
Actinidia39366 Actinidia chinensis HOM05D004629 ORTHO05D006604 1.5e-100 371.3 201 91.0
CDE05G1698 Ceratophyllum demersum HOM05D004635 ORTHO05D005899 1.1e-90 338.6 240 72.1
Aqoxy5G02405 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 1.6e-86 324.7 184 88.0
CDE05G0143 Ceratophyllum demersum HOM05D004629 ORTHO05D019743 2.8e-83 313.9 231 69.7
Nn2g15715 Nelumbo nucifera HOM05D004629 ORTHO05D019743 1.7e-77 294.7 637 34.5
Psat2g086520 Pisum sativum HOM05D004629 ORTHO05D006604 2.3e-77 294.3 163 87.7
DCAR_017261 Daucus carota HOM05D004629 ORTHO05D006604 1.8e-74 284.6 163 85.3
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 2.5e-60 237.7 273 50.5
Sabra01G0008400 Salix brachista HOM05D004629 ORTHO05D023587 2.3e-53 214.5 230 55.7
Lj2A677G23 Lonicera japonica HOM05D004629 ORTHO05D006604 1.4e-47 195.3 104 92.3
Aqoxy3G01857 Aquilegia oxysepala HOM05D004629 ORTHO05D006604 5.3e-42 176.8 104 82.7
Psat3g007720 Pisum sativum HOM05D004629 ORTHO05D006604 2.9e-40 171.0 99 83.8
Psat1g079640 Pisum sativum HOM05D004629 ORTHO05D023587 3.2e-39 167.5 104 76.0
Thecc.10G098800 Theobroma cacao HOM05D004629 ORTHO05D006604 4.7e-38 163.7 158 60.1
Nn7g35985 Nelumbo nucifera HOM05D004629 ORTHO05D019743 3.0e-37 161.0 86 86.0
Aqoxy5G02400 Aquilegia oxysepala HOM05D004629 ORTHO05D023587 1.5e-36 158.7 90 87.8
Psat4g081640 Pisum sativum HOM05D004629 ORTHO05D019743 4.4e-36 157.1 91 84.6
Psat4g081680 Pisum sativum HOM05D004629 ORTHO05D019743 5.7e-36 156.8 91 84.6
unitig_22.g5472 Utricularia gibba HOM05D004629 ORTHO05D006604 1.1e-34 152.5 125 64.8
AT2G12280 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 3.8e-32 144.1 74 86.5
Haze_27099 Corylus avellana HOM05D004629 ORTHO05D006604 1.2e-20 105.9 116 51.7
BcaB02g11150 Brassica carinata HOM05D004629 ORTHO05D092705 2.0e-20 105.1 53 96.2
Psat4g161960 Pisum sativum HOM05D001026 ORTHO05D007776 3.7e-19 100.9 60 80.0
CAN.G8813.1 Capsicum annuum HOM05D004629 ORTHO05D006604 5.4e-18 97.1 70 67.1
AT2G12200 Arabidopsis thaliana HOM05D004629 ORTHO05D019743 5.9e-17 93.6 63 66.7
DCAR_026904 Daucus carota HOM05D004629 ORTHO05D023587 1.7e-16 92.0 53 79.2
Nn1g06900 Nelumbo nucifera HOM05D004629 ORTHO05D023587 1.1e-15 89.4 49 83.7
Aqoxy2G02051 Aquilegia oxysepala HOM05D004629 ORTHO05D004559 8.8e-13 79.7 56 66.1
ECA248G2032 Erigeron canadensis HOM05D004629 ORTHO05D189049 2.3e-08 65.1 43 69.8


User provided reference genes

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