Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 0.0e+00 1271.9 644 100.0
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 0.0e+00 1095.5 653 84.4
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 0.0e+00 1092.8 653 84.1
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 4.5e-307 1057.4 607 85.3
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.7e-306 1055.4 620 84.0
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 2.9e-306 1054.7 654 80.0
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 2.5e-305 1051.6 648 81.0
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 1.0e-303 1046.2 580 87.2
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 5.7e-302 1040.4 610 83.4
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 3.7e-301 1037.7 651 79.9
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 4.8e-301 1037.3 603 84.1
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 6.3e-301 1036.9 643 80.2
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 1.1e-300 1036.2 621 82.0
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 9.1e-300 1033.1 617 82.8
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.2e-299 1032.7 652 79.8
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.2e-299 1032.7 616 82.5
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 2.6e-299 1031.6 610 83.0
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 3.5e-299 1031.2 663 77.8
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 4.5e-299 1030.8 603 84.1
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 1.3e-298 1029.2 584 85.1
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.3e-298 1029.2 607 82.5
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 2.2e-298 1028.5 613 81.7
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 2.9e-298 1028.1 581 84.9
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 6.5e-298 1026.9 670 77.0
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 8.5e-298 1026.5 577 86.1
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 1.1e-297 1026.2 585 84.4
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 5.5e-297 1023.8 721 73.8
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 1.2e-296 1022.7 607 82.0
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.7e-296 1020.8 651 77.7
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 8.0e-296 1020.0 651 78.3
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 5.2e-295 1017.3 585 84.3
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 6.7e-295 1016.9 651 77.4
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 1.2e-294 1016.1 651 78.5
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.0e-294 1015.4 651 77.6
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 2.0e-294 1015.4 652 77.8
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 9.7e-294 1013.1 569 85.2
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 9.7e-294 1013.1 580 83.6
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 3.7e-293 1011.1 580 84.5
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 3.7e-293 1011.1 585 83.4
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 8.2e-293 1010.0 543 89.1
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 8.2e-293 1010.0 603 81.6
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 1.4e-292 1009.2 580 84.7
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 1.4e-292 1009.2 585 83.6
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 3.1e-292 1008.1 579 84.5
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 3.1e-292 1008.1 585 83.1
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 1.2e-291 1006.1 598 81.6
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 4.5e-291 1004.2 580 84.1
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 1.7e-290 1002.3 579 84.1
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.8e-290 1001.1 581 83.0
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 6.5e-290 1000.3 600 80.8
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.5e-289 999.2 574 83.6
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 4.2e-289 997.7 581 83.0
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 7.2e-289 996.9 583 82.8
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.6e-288 995.7 585 82.4
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 2.1e-288 995.3 580 82.8
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 3.6e-288 994.6 583 81.8
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 4.7e-288 994.2 581 81.9
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 6.1e-288 993.8 585 81.5
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 4.0e-287 991.1 571 83.4
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 5.2e-287 990.7 613 80.1
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 1.5e-286 989.2 585 80.9
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.5e-286 989.2 583 81.3
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 4.4e-286 987.6 585 81.0
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 9.8e-286 986.5 583 81.6
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.7e-285 985.7 543 86.0
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 2.2e-285 985.3 606 78.9
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 2.2e-285 985.3 642 76.8
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 2.2e-285 985.3 619 77.9
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 3.7e-285 984.6 577 81.5
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.8e-285 984.2 604 78.0
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 1.4e-284 982.6 606 78.4
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 2.4e-284 981.9 606 79.0
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 3.1e-284 981.5 580 81.6
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 4.1e-284 981.1 598 79.4
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 5.4e-284 980.7 578 81.3
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 9.1e-284 979.9 618 78.0
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 9.1e-284 979.9 619 77.4
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 5.9e-283 977.2 619 77.9
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 1.3e-282 976.1 640 75.0
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.7e-282 975.7 593 79.4
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 8.6e-282 973.4 581 81.2
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.5e-281 972.6 545 84.4
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 1.5e-281 972.6 581 81.2
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 2.5e-281 971.8 581 81.1
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 5.5e-281 970.7 602 77.9
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 9.5e-281 969.9 581 81.1
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 9.5e-281 969.9 602 78.2
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 4.7e-280 967.6 580 80.9
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 4.7e-280 967.6 517 88.8
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 6.1e-280 967.2 580 80.7
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 6.1e-280 967.2 531 85.9
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 5.2e-279 964.1 570 80.5
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 2.4e-276 955.3 593 77.9
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 5.4e-276 954.1 545 83.1
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 5.9e-275 950.7 553 83.2
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 1.0e-274 949.9 594 77.8
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 1.7e-274 949.1 594 77.4
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 3.8e-274 948.0 678 70.6
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.1e-273 946.4 564 80.1
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 1.5e-270 936.0 581 77.6
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 5.7e-270 934.1 613 76.3
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 1.3e-269 932.9 612 76.3
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 8.3e-269 930.2 595 77.1
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.6e-267 926.0 570 77.2
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.6e-267 926.0 605 74.7
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 3.0e-266 921.8 566 79.2
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 5.6e-265 917.5 532 81.6
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 7.5e-262 907.1 602 73.9
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 7.0e-260 900.6 573 76.8
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 6.6e-258 894.0 565 77.5
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 3.0e-250 868.6 580 74.8
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 5.1e-250 867.8 544 75.7
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 3.3e-249 865.1 492 85.4
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 5.6e-249 864.4 599 72.5
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 8.7e-242 840.5 448 89.7
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 8.7e-242 840.5 545 75.8
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 9.9e-238 827.0 448 88.2
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 2.1e-235 819.3 537 75.4
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 4.6e-235 818.1 584 67.3
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 8.1e-232 807.4 617 65.2
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 4.0e-231 805.1 439 87.5
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 5.8e-230 801.2 612 63.6
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 1.6e-211 740.0 517 70.6
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.7e-202 708.0 488 72.5
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 6.1e-195 684.9 452 73.5
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 2.6e-182 642.9 538 59.5
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 1.0e-178 630.9 361 82.5
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 1.4e-170 604.0 344 84.9
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.9e-164 583.6 577 56.2
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 4.7e-155 552.4 338 81.1
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 6.6e-149 531.9 419 66.1
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 7.5e-145 518.5 278 88.8
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 1.1e-143 514.6 280 85.7
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 4.1e-143 512.7 550 54.4
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 5.4e-143 512.3 560 48.8
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 3.0e-141 506.5 308 81.2
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.5e-116 424.5 576 43.8
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 9.6e-116 421.8 288 70.1
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.7e-96 357.8 645 36.3
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 9.7e-92 342.0 263 68.4
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 2.2e-91 340.9 184 87.5
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 3.0e-85 320.5 179 86.0
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 5.1e-85 319.7 179 86.0
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 1.5e-84 318.2 188 79.3
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 2.2e-80 304.3 167 86.2
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 5.0e-80 303.1 593 35.9
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 3.6e-78 297.0 584 34.9
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 5.7e-76 289.7 582 34.2
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 2.6e-68 264.2 321 48.9
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 9.7e-68 262.3 140 89.3
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 1.3e-67 261.9 610 33.8
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 1.7e-64 251.5 197 65.5
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.0e-61 242.3 595 31.1
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.4e-52 210.3 117 85.5
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 4.9e-51 206.8 120 85.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 6.1e-46 189.9 107 84.1
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 5.2e-45 186.8 98 89.8
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 7.8e-41 172.9 155 58.7
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.1e-38 163.3 126 65.1
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 1.9e-31 141.7 77 81.8
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.5e-31 141.4 113 65.5
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 1.2e-28 132.5 67 88.1
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 4.4e-28 130.6 65 92.3
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 5.8e-28 130.2 97 66.0
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 4.1e-26 124.0 137 47.4
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 2.3e-21 108.2 63 76.2
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.1e-13 82.8 119 43.7
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 9.9e-12 76.3 54 70.4
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 3.2e-10 71.2 67 59.7
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 2.5e-07 61.6 38 68.4
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 1.3e-06 59.3 63 54.0
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 1.6e-06 58.9 65 49.2


User provided reference genes

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