Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013528m.g Citrus clementina HOM05D006166 ORTHO05D007663 8.6e-116 420.2 199 100.0
Ciclev10028390m.g Citrus clementina HOM05D006166 ORTHO05D007663 1.6e-66 256.5 157 81.5
Manes.14G166700 Manihot esculenta HOM05D006166 ORTHO05D007663 5.1e-60 235.0 161 72.0
Thecc.02G140300 Theobroma cacao HOM05D006166 ORTHO05D007663 4.4e-59 231.9 162 70.4
Atru.chr6.1112 Acer truncatum HOM05D006166 ORTHO05D007663 9.7e-59 230.7 161 68.9
Gohir.D13G055000 Gossypium hirsutum HOM05D006166 ORTHO05D007663 1.7e-58 229.9 162 69.1
Gorai.013G062000 Gossypium raimondii HOM05D006166 ORTHO05D007663 1.7e-58 229.9 162 69.1
CSS0045599 Camellia sinensis var. sinensis HOM05D006166 ORTHO05D007663 3.7e-58 228.8 163 68.7
Cfa005611 Carpinus fangiana HOM05D006166 ORTHO05D007663 4.8e-58 228.4 175 65.7
Duzib132G0630 Durio zibethinus HOM05D006166 ORTHO05D007663 4.8e-58 228.4 162 69.8
COL.COLO4_24968 Corchorus olitorius HOM05D006166 ORTHO05D007663 6.3e-58 228.0 162 68.5
Manes.06G010300 Manihot esculenta HOM05D006166 ORTHO05D007663 6.3e-58 228.0 161 70.2
CiPaw.06G152600 Carya illinoinensis HOM05D006166 ORTHO05D007663 4.1e-57 225.3 160 66.9
Actinidia00261 Actinidia chinensis HOM05D006166 ORTHO05D007663 6.9e-57 224.6 163 68.7
GSVIVG01003077001 Vitis vinifera HOM05D006166 ORTHO05D007663 6.9e-57 224.6 163 67.5
Rhsim11G0136200 Rhododendron simsii HOM05D006166 ORTHO05D007663 1.2e-56 223.8 163 67.5
Cpa.g.sc42.78 Carica papaya HOM05D006166 ORTHO05D007663 2.0e-56 223.0 161 67.7
Sabra01G0159700 Salix brachista HOM05D006166 ORTHO05D007663 2.6e-56 222.6 161 66.5
Sabra01G0159900 Salix brachista HOM05D006166 ORTHO05D007663 2.6e-56 222.6 161 66.5
TWI14G0161 Tripterygium wilfordii HOM05D006166 ORTHO05D007663 2.6e-56 222.6 155 69.7
Oeu026161.1 Olea europaea HOM05D006166 ORTHO05D007663 3.4e-56 222.2 181 61.3
Potri.001G206400 Populus trichocarpa HOM05D006166 ORTHO05D007663 3.4e-56 222.2 161 67.1
vmacro01821 Vaccinium macrocarpon HOM05D006166 ORTHO05D007663 3.4e-56 222.2 163 66.9
Gohir.A13G066600 Gossypium hirsutum HOM05D006166 ORTHO05D007663 4.5e-56 221.9 162 66.7
MD10G1052200 Malus domestica HOM05D006166 ORTHO05D007663 7.7e-56 221.1 161 65.8
CiPaw.05G036600 Carya illinoinensis HOM05D006166 ORTHO05D007663 1.0e-55 220.7 162 65.4
CsaV3_7G006420 Cucumis sativus L. HOM05D006166 ORTHO05D007663 1.0e-55 220.7 175 61.7
Duzib248G0370 Durio zibethinus HOM05D006166 ORTHO05D007663 1.0e-55 220.7 162 67.9
Glyma.08G073700 Glycine max HOM05D006166 ORTHO05D007663 1.0e-55 220.7 162 63.6
Nn5g29064 Nelumbo nucifera HOM05D006166 ORTHO05D007663 1.3e-55 220.3 175 62.9
SGA_v2.0_scaffold83G26295 Striga asiatica HOM05D006166 ORTHO05D007663 1.3e-55 220.3 163 66.9
ECA236G4484 Erigeron canadensis HOM05D006166 ORTHO05D007663 1.7e-55 219.9 163 66.3
TAR628G0634 Trochodendron aralioides HOM05D006166 ORTHO05D007663 2.9e-55 219.2 157 66.9
Nn1g05303 Nelumbo nucifera HOM05D006166 ORTHO05D007663 3.8e-55 218.8 175 62.3
Lsat_1_v5_gn_7_80840 Lactuca sativa HOM05D006166 ORTHO05D007663 5.0e-55 218.4 163 65.6
HanXRQChr11g0338151 Helianthus annuus HOM05D006166 ORTHO05D007663 6.5e-55 218.0 163 65.6
arahy.Tifrunner.gnm1.ann1.1L8CHD Arachis hypogaea HOM05D006166 ORTHO05D007663 8.5e-55 217.6 161 63.4
arahy.Tifrunner.gnm1.ann1.KS83Z6 Arachis hypogaea HOM05D006166 ORTHO05D007663 8.5e-55 217.6 161 63.4
MELO3C018652.2 Cucumis melo HOM05D006166 ORTHO05D007663 8.5e-55 217.6 175 61.1
Oeu007956.1 Olea europaea HOM05D006166 ORTHO05D007663 8.5e-55 217.6 181 62.4
MSTRG.16576 Avicennia marina HOM05D006166 ORTHO05D007663 1.4e-54 216.9 163 65.0
Glyma.05G118600 Glycine max HOM05D006166 ORTHO05D007663 1.4e-54 216.9 162 63.6
Peaxi162Scf00152g01019 Petunia axillaris HOM05D006166 ORTHO05D007663 1.9e-54 216.5 168 62.5
Phvul.002G207800 Phaseolus vulgaris HOM05D006166 ORTHO05D007663 1.9e-54 216.5 162 63.6
PGSC0003DMG400022942 Solanum tuberosum HOM05D006166 ORTHO05D007663 1.9e-54 216.5 168 62.5
THA.LOC104807167 Tarenaya hassleriana HOM05D006166 ORTHO05D007663 1.9e-54 216.5 156 66.7
MBI05_g32464_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 2.5e-54 216.1 163 63.2
Sed0015493 Sechium edule HOM05D006166 ORTHO05D007663 2.5e-54 216.1 161 65.2
Sopen11g020300 Solanum pennellii HOM05D006166 ORTHO05D007663 2.5e-54 216.1 167 62.3
ClCG09G015330 Citrullus lanatus HOM05D006166 ORTHO05D007663 3.2e-54 215.7 161 65.8
Lj4g0006983 Lotus japonicus HOM05D006166 ORTHO05D007663 3.2e-54 215.7 161 62.1
QL11p020534 Quercus lobata HOM05D006166 ORTHO05D007663 3.2e-54 215.7 162 64.2
CAN.G924.1 Capsicum annuum HOM05D006166 ORTHO05D007663 4.2e-54 215.3 168 62.5
PGR042G2317 Punica granatum HOM05D006166 ORTHO05D007663 4.2e-54 215.3 161 65.2
SalBow5G4894 Salvia bowleyana HOM05D006166 ORTHO05D007663 4.2e-54 215.3 163 63.2
VMungo0251G2633 Vigna mungo HOM05D006166 ORTHO05D007663 4.2e-54 215.3 162 63.0
Migut.B00617 Erythranthe guttata HOM05D006166 ORTHO05D007663 7.2e-54 214.5 168 63.1
Eucgr.G00773 Eucalyptus grandis HOM05D006166 ORTHO05D007663 7.2e-54 214.5 175 62.3
CDE05G0221 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 9.4e-54 214.2 167 61.7
Lalb_Chr10g0097721 Lupinus albus HOM05D006166 ORTHO05D007663 1.2e-53 213.8 161 64.0
FAN26G0367 Fragaria x ananassa HOM05D006166 ORTHO05D007663 1.6e-53 213.4 162 63.0
Cc02_g21650 Coffea canephora HOM05D006166 ORTHO05D007663 2.1e-53 213.0 163 65.0
DCAR_009495 Daucus carota HOM05D000068 ORTHO05D000084 3.6e-53 212.2 163 64.4
Prupe.8G062500 Prunus persica HOM05D006166 ORTHO05D007663 3.6e-53 212.2 161 62.7
Hund06393 Selenicereus undatus HOM05D006166 ORTHO05D007663 3.6e-53 212.2 161 62.1
Medtr4g094258 Medicago truncatula HOM05D006166 ORTHO05D007663 6.1e-53 211.5 161 62.1
FvH4_1g25470 Fragaria vesca HOM05D006166 ORTHO05D007663 1.4e-52 210.3 162 62.3
FAN28G2956 Fragaria x ananassa HOM05D006166 ORTHO05D007663 1.4e-52 210.3 162 62.3
Nitab4.5_0000215g0090 Nicotiana tabacum HOM05D006166 ORTHO05D007663 2.3e-52 209.5 184 58.2
CANSAT11G1721 Cannabis sativa HOM05D006166 ORTHO05D007663 3.0e-52 209.1 160 64.4
FAN23G1673 Fragaria x ananassa HOM05D006166 ORTHO05D007663 3.0e-52 209.1 162 62.3
RcHm_v2.0_Chr2g0123601 Rosa chinensis HOM05D006166 ORTHO05D007663 3.0e-52 209.1 161 62.7
unitig_26.g9064 Utricularia gibba HOM05D006166 ORTHO05D007663 3.9e-52 208.8 163 62.6
TPR.G10454 Trifolium pratense HOM05D006166 ORTHO05D007663 5.2e-52 208.4 161 60.2
ATR0564G319 Amborella trichopoda HOM05D006166 ORTHO05D007663 6.7e-52 208.0 163 63.2
Ca_18343_v3 Cicer arietinum L. HOM05D006166 ORTHO05D007663 6.7e-52 208.0 161 60.2
PSO541G1328 Papaver somniferum HOM05D006166 ORTHO05D007663 6.7e-52 208.0 163 63.2
PSO133G0062 Papaver somniferum HOM05D006166 ORTHO05D007663 1.1e-51 207.2 163 62.6
Psat7g098480 Pisum sativum HOM05D006166 ORTHO05D007663 1.1e-51 207.2 161 60.9
AL3G45670 Arabidopsis lyrata HOM05D006166 ORTHO05D007663 1.5e-51 206.8 157 62.4
Ciclev10033347m.g Citrus clementina HOM05D006166 ORTHO05D007663 3.3e-51 205.7 138 78.3
Carub.0003s2824 Capsella rubella HOM05D006166 ORTHO05D007663 5.7e-51 204.9 157 61.1
AT2G13840 Arabidopsis thaliana HOM05D006166 ORTHO05D007663 7.4e-51 204.5 157 61.8
CARHR104670 Cardamine hirsuta HOM05D006166 ORTHO05D007663 7.4e-51 204.5 159 60.4
FAN19G2366 Fragaria x ananassa HOM05D006166 ORTHO05D007663 9.7e-51 204.1 162 61.7
AUR62013110 Chenopodium quinoa HOM05D006166 ORTHO05D007663 1.3e-50 203.8 161 59.6
EL10Ac9g21463 Beta vulgaris HOM05D006166 ORTHO05D007663 1.7e-50 203.4 161 59.6
Thhalv10022694m.g Eutrema salsugineum HOM05D006166 ORTHO05D007663 2.2e-50 203.0 157 59.9
Nitab4.5_0001937g0070 Nicotiana tabacum HOM05D006166 ORTHO05D007663 3.7e-50 202.2 184 56.5
AUR62010115 Chenopodium quinoa HOM05D006166 ORTHO05D007663 6.3e-50 201.4 161 59.0
Cfa005618 Carpinus fangiana HOM05D006166 ORTHO05D007663 8.2e-50 201.1 153 65.4
Lj5A240G38 Lonicera japonica HOM05D006166 ORTHO05D007663 8.2e-50 201.1 159 64.8
Sp3g27280 Schrenkiella parvula HOM05D006166 ORTHO05D007663 1.1e-49 200.7 157 59.9
Aqoxy6G00587 Aquilegia oxysepala HOM05D006166 ORTHO05D007663 2.4e-49 199.5 163 60.7
BcaB08g34548 Brassica carinata HOM05D006166 ORTHO05D007663 4.1e-49 198.7 157 59.9
A03p45110 Brassica napus HOM05D006166 ORTHO05D007663 4.1e-49 198.7 157 59.2
BcaC01g03110 Brassica carinata HOM05D006166 ORTHO05D007663 7.0e-49 198.0 157 59.2
C03p55960 Brassica napus HOM05D006166 ORTHO05D007663 7.0e-49 198.0 157 59.2
BolC3t17880H Brassica oleracea HOM05D006166 ORTHO05D007663 7.0e-49 198.0 157 59.2
BraA03t13646Z Brassica rapa HOM05D006166 ORTHO05D007663 1.2e-48 197.2 157 58.6
Hund00054 Selenicereus undatus HOM05D006166 ORTHO05D007663 1.2e-48 197.2 171 55.6
Sc14g0003300 Simmondsia chinensis HOM05D006166 ORTHO05D007663 1.7e-47 193.4 155 60.6
Os02g0752600 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 3.8e-47 192.2 163 57.1
Os03g0192000 Oryza sativa ssp. japonica HOM05D006166 ORTHO05D007663 3.8e-47 192.2 157 57.3
Aa31LG8G12460 Aethionema arabicum HOM05D006166 ORTHO05D007663 6.5e-47 191.4 150 60.0
SEGI_35388 Sequoiadendron giganteum HOM05D006166 ORTHO05D007663 4.2e-46 188.7 156 58.3
HPP92_016815 Vanilla planifolia HOM05D006166 ORTHO05D007663 3.3e-43 179.1 161 54.0
Cc03_g14510 Coffea canephora HOM05D006166 ORTHO05D007663 1.3e-39 167.2 157 56.1
Mapoly0026s0056 Marchantia polymorpha HOM05D006166 ORTHO05D007663 1.7e-39 166.8 154 52.6
Pp3c6_6030 Physcomitrium patens HOM05D006166 ORTHO05D007663 8.5e-39 164.5 174 51.1
Pp3c6_6031 Physcomitrium patens HOM05D006166 ORTHO05D007663 8.5e-39 164.5 174 51.1
AagrBONN_evm.TU.Sc2ySwM_117.2616 Anthoceros agrestis HOM05D006166 ORTHO05D007663 4.2e-38 162.2 163 50.9
SMO174G0124 Selaginella moellendorffii HOM05D006166 ORTHO05D007663 2.1e-37 159.8 174 47.7
Dinv09040 Davidia involucrata HOM05D006166 ORTHO05D007663 1.4e-36 157.1 117 66.7
MBI02_g36658_MAGBIO Magnolia biondii HOM05D006166 ORTHO05D007663 3.7e-34 149.1 130 56.9
Ah.01g009510 Amaranthus hybridus HOM05D006166 ORTHO05D007663 4.8e-34 148.7 123 58.5
Zm00001eb007010 Zea mays HOM05D006166 ORTHO05D007663 1.2e-32 144.1 126 56.3
Haze_10674 Corylus avellana HOM05D006166 ORTHO05D007663 6.5e-31 138.3 194 43.3
Solyc11g044800.3 Solanum lycopersicum HOM05D006166 ORTHO05D007663 1.8e-28 130.2 101 63.4
Glyma.17G217500 Glycine max HOM05D006166 ORTHO05D007663 3.6e-21 105.9 77 59.7
Dinv24200 Davidia involucrata HOM05D006166 ORTHO05D007663 5.9e-16 88.6 61 65.6
CDE05G0065 Ceratophyllum demersum HOM05D006166 ORTHO05D007663 1.0e-15 87.8 76 59.2


User provided reference genes

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