Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10013072m.g Citrus clementina HOM05D006951 ORTHO05D008594 1.6e-76 289.3 139 100.0
Atru.chr8.1776 Acer truncatum HOM05D006951 ORTHO05D008594 6.1e-60 234.2 124 85.5
Haze_20517 Corylus avellana HOM05D006951 ORTHO05D008594 2.6e-58 228.8 124 82.3
TWI74G0247 Tripterygium wilfordii HOM05D006951 ORTHO05D008594 4.4e-58 228.0 124 83.9
Cfa017635 Carpinus fangiana HOM05D006951 ORTHO05D008594 9.8e-58 226.9 124 81.5
Sabra06G0096900 Salix brachista HOM05D006951 ORTHO05D008594 9.8e-58 226.9 124 83.1
CiPaw.09G171000 Carya illinoinensis HOM05D006951 ORTHO05D008594 4.9e-57 224.6 124 79.8
Potri.006G122700 Populus trichocarpa HOM05D006951 ORTHO05D008594 2.4e-56 222.2 124 81.5
Cpa.g.sc456.2 Carica papaya HOM05D006951 ORTHO05D008594 3.1e-56 221.9 126 81.7
CANSAT80G0954 Cannabis sativa HOM05D006951 ORTHO05D008594 4.1e-56 221.5 124 79.8
COL.COLO4_26935 Corchorus olitorius HOM05D006951 ORTHO05D008594 4.1e-56 221.5 133 77.4
Duzib106G1710 Durio zibethinus HOM05D006951 ORTHO05D008594 7.0e-56 220.7 124 80.6
ClCG04G009460 Citrullus lanatus HOM05D006951 ORTHO05D008594 9.1e-56 220.3 129 76.0
Thecc.05G069400 Theobroma cacao HOM05D006951 ORTHO05D008594 9.1e-56 220.3 124 80.6
Glyma.19G185200 Glycine max HOM05D006951 ORTHO05D008594 1.2e-55 219.9 124 80.6
Eucgr.A01658 Eucalyptus grandis HOM05D006951 ORTHO05D008594 2.0e-55 219.2 124 77.4
Gohir.D09G141300 Gossypium hirsutum HOM05D006951 ORTHO05D008594 2.0e-55 219.2 124 80.6
Gorai.006G162200 Gossypium raimondii HOM05D006951 ORTHO05D008594 2.0e-55 219.2 124 80.6
CsaV3_6G040080 Cucumis sativus L. HOM05D006951 ORTHO05D008594 3.5e-55 218.4 129 76.7
Actinidia26657 Actinidia chinensis HOM05D006951 ORTHO05D008594 5.9e-55 217.6 124 79.0
THA.LOC104816356 Tarenaya hassleriana HOM05D006951 ORTHO05D008594 5.9e-55 217.6 124 78.2
MELO3C024481.2 Cucumis melo HOM05D006951 ORTHO05D008594 2.3e-54 215.7 129 74.4
Gohir.A09G145200 Gossypium hirsutum HOM05D006951 ORTHO05D008594 2.3e-54 215.7 124 79.8
RcHm_v2.0_Chr3g0470511 Rosa chinensis HOM05D006951 ORTHO05D008594 2.3e-54 215.7 125 79.2
Actinidia28914 Actinidia chinensis HOM05D006951 ORTHO05D008594 2.9e-54 215.3 124 79.8
VMungo1383G2370 Vigna mungo HOM05D006951 ORTHO05D008594 3.8e-54 214.9 124 75.8
Manes.16G055400 Manihot esculenta HOM05D006951 ORTHO05D008594 5.0e-54 214.5 124 77.4
PGR004G1868 Punica granatum HOM05D006951 ORTHO05D008594 6.6e-54 214.2 125 79.2
AL6G12830 Arabidopsis lyrata HOM05D006951 ORTHO05D008594 1.1e-53 213.4 124 79.0
Carub.0006s0227 Capsella rubella HOM05D006951 ORTHO05D008594 1.1e-53 213.4 124 79.0
FAN05G0469 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.1e-53 213.4 125 78.4
FAN14G1959 Fragaria x ananassa HOM05D006951 ORTHO05D008594 1.5e-53 213.0 125 78.4
FAN05G0824 Fragaria x ananassa HOM05D006951 ORTHO05D008594 2.5e-53 212.2 125 77.6
Aa31LG1G21700 Aethionema arabicum HOM05D006951 ORTHO05D008594 3.3e-53 211.8 123 78.0
Prupe.7G127500 Prunus persica HOM05D006951 ORTHO05D008594 3.3e-53 211.8 124 75.0
vmacro07304 Vaccinium macrocarpon HOM05D006951 ORTHO05D008594 7.2e-53 210.7 124 76.6
GSVIVG01033661001 Vitis vinifera HOM05D006951 ORTHO05D008594 9.5e-53 210.3 124 79.0
Dinv37325 Davidia involucrata HOM05D006951 ORTHO05D008594 1.2e-52 209.9 124 75.8
Thhalv10014956m.g Eutrema salsugineum HOM05D006951 ORTHO05D008594 1.2e-52 209.9 124 76.6
Medtr7g102310 Medicago truncatula HOM05D006951 ORTHO05D008594 1.2e-52 209.9 124 75.0
FvH4_6g16580 Fragaria vesca HOM05D006951 ORTHO05D008594 1.6e-52 209.5 125 77.6
Phvul.001G180100 Phaseolus vulgaris HOM05D006951 ORTHO05D008594 1.6e-52 209.5 124 73.4
CARHR209870 Cardamine hirsuta HOM05D006951 ORTHO05D008594 2.1e-52 209.1 124 76.6
FAN02G4365 Fragaria x ananassa HOM05D006951 ORTHO05D008594 2.1e-52 209.1 125 76.8
Aqoxy2G01713 Aquilegia oxysepala HOM05D006951 ORTHO05D008594 2.8e-52 208.8 124 75.0
TAR369G1149 Trochodendron aralioides HOM05D006951 ORTHO05D008594 2.8e-52 208.8 124 74.2
QL07p042869 Quercus lobata HOM05D006951 ORTHO05D008594 4.7e-52 208.0 160 63.1
Sp6g39280 Schrenkiella parvula HOM05D006951 ORTHO05D008594 4.7e-52 208.0 124 75.0
Sed0009232 Sechium edule HOM05D006951 ORTHO05D008594 4.7e-52 208.0 130 73.1
Cc06_g04390 Coffea canephora HOM05D006951 ORTHO05D008594 8.0e-52 207.2 124 74.2
MD12G1109000 Malus domestica HOM05D006951 ORTHO05D008594 8.0e-52 207.2 124 75.0
PSO339G4731 Papaver somniferum HOM05D006951 ORTHO05D008594 8.0e-52 207.2 124 73.4
Nitab4.5_0002247g0030 Nicotiana tabacum HOM05D006951 ORTHO05D008594 1.0e-51 206.8 122 77.9
Nitab4.5_0024714g0010 Nicotiana tabacum HOM05D006951 ORTHO05D008594 1.0e-51 206.8 122 77.9
Solyc01g097140.4 Solanum lycopersicum HOM05D006951 ORTHO05D008594 1.0e-51 206.8 123 77.2
Sopen01g040820 Solanum pennellii HOM05D006951 ORTHO05D008594 1.0e-51 206.8 123 77.2
PGSC0003DMG400027515 Solanum tuberosum HOM05D006951 ORTHO05D008594 1.0e-51 206.8 123 77.2
TAR633G0596 Trochodendron aralioides HOM05D006951 ORTHO05D008594 1.0e-51 206.8 124 74.2
BcaB01g05838 Brassica carinata HOM05D006951 ORTHO05D008594 1.4e-51 206.5 123 75.6
A03p01180 Brassica napus HOM05D006951 ORTHO05D008594 1.4e-51 206.5 123 75.6
C03p01520 Brassica napus HOM05D006951 ORTHO05D008594 1.4e-51 206.5 123 75.6
BolC3t12706H Brassica oleracea HOM05D006951 ORTHO05D008594 1.4e-51 206.5 123 75.6
BraA03t09500Z Brassica rapa HOM05D006951 ORTHO05D008594 1.4e-51 206.5 123 75.6
Ca_08913_v3 Cicer arietinum L. HOM05D006951 ORTHO05D008594 2.3e-51 205.7 122 75.4
BcaB01g05820 Brassica carinata HOM05D006951 ORTHO05D008594 4.0e-51 204.9 123 74.8
arahy.Tifrunner.gnm1.ann1.GEWQ29 Arachis hypogaea HOM05D006951 ORTHO05D008594 5.2e-51 204.5 124 71.8
arahy.Tifrunner.gnm1.ann1.U3DP0D Arachis hypogaea HOM05D006951 ORTHO05D008594 5.2e-51 204.5 124 71.8
PSO801G0767 Papaver somniferum HOM05D006951 ORTHO05D008594 5.2e-51 204.5 124 72.6
Peaxi162Scf00282g00715 Petunia axillaris HOM05D006951 ORTHO05D008594 6.8e-51 204.1 123 75.6
Nn6g35256 Nelumbo nucifera HOM05D006951 ORTHO05D008594 1.2e-50 203.4 123 74.0
Psat3g041600 Pisum sativum HOM05D006951 ORTHO05D008594 2.0e-50 202.6 124 73.4
EL10Ac7g16659 Beta vulgaris HOM05D006951 ORTHO05D008594 2.6e-50 202.2 124 73.4
AUR62042061 Chenopodium quinoa HOM05D006951 ORTHO05D008594 3.4e-50 201.8 124 71.8
Nitab4.5_0009274g0040 Nicotiana tabacum HOM05D006951 ORTHO05D008594 3.4e-50 201.8 121 76.9
AUR62026921 Chenopodium quinoa HOM05D006951 ORTHO05D008594 4.4e-50 201.4 124 71.8
Lj1g0019165 Lotus japonicus HOM05D006951 ORTHO05D008594 9.8e-50 200.3 124 73.4
CAN.G134.74 Capsicum annuum HOM05D006951 ORTHO05D008594 1.3e-49 199.9 123 74.0
Hma1.2p1_0828F.1_g225170 Hydrangea macrophylla HOM05D006951 ORTHO05D008594 1.3e-49 199.9 125 76.0
ECA233G5925 Erigeron canadensis HOM05D006951 ORTHO05D008594 1.7e-49 199.5 121 74.4
MSTRG.10329 Avicennia marina HOM05D006951 ORTHO05D008594 6.4e-49 197.6 124 72.6
SalBow5G4485 Salvia bowleyana HOM05D006951 ORTHO05D008594 1.8e-48 196.1 124 72.6
Lalb_Chr25g0288931 Lupinus albus HOM05D006951 ORTHO05D008594 9.2e-48 193.7 137 62.0
DCAR_017669 Daucus carota HOM05D006951 ORTHO05D008594 2.0e-47 192.6 123 67.5
SalBow5G4376 Salvia bowleyana HOM05D006951 ORTHO05D008594 2.0e-47 192.6 124 71.8
MBI07_g19430_MAGBIO Magnolia biondii HOM05D006951 ORTHO05D008594 7.8e-47 190.7 120 68.3
CDE08G0062 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 1.7e-46 189.5 124 66.9
SGA_v2.0_scaffold35G14116 Striga asiatica HOM05D006951 ORTHO05D008594 1.7e-46 189.5 124 68.5
HanXRQChr13g0400861 Helianthus annuus HOM05D006951 ORTHO05D008594 3.0e-46 188.7 123 66.7
HanXRQChr02g0051701 Helianthus annuus HOM05D006951 ORTHO05D008594 8.6e-46 187.2 123 69.9
Sc20g0005620 Simmondsia chinensis HOM05D006951 ORTHO05D008594 1.9e-45 186.0 115 73.9
Migut.L01713 Erythranthe guttata HOM05D006951 ORTHO05D008594 2.3e-43 179.1 123 66.7
CDE02G4226 Ceratophyllum demersum HOM05D006951 ORTHO05D008594 5.2e-43 177.9 124 66.1
ATR0723G063 Amborella trichopoda HOM05D006951 ORTHO05D008594 2.2e-41 172.6 122 62.3
Os03g0108000 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 4.9e-41 171.4 124 59.7
Lsat_1_v5_gn_6_24461 Lactuca sativa HOM05D006951 ORTHO05D008594 6.4e-41 171.0 113 67.3
Zm00001eb394010 Zea mays HOM05D006951 ORTHO05D008594 8.3e-41 170.6 123 61.8
HPP92_025583 Vanilla planifolia HOM05D006951 ORTHO05D008594 6.0e-39 164.5 124 56.5
unitig_8.g4717 Utricularia gibba HOM05D006951 ORTHO05D008594 3.3e-37 158.7 118 61.0
Dinv35800 Davidia involucrata HOM05D006951 ORTHO05D008594 1.4e-35 153.3 110 69.1
SEGI_23238 Sequoiadendron giganteum HOM05D006951 ORTHO05D008594 5.2e-35 151.4 121 52.9
Pp3c1_27510 Physcomitrium patens HOM05D006951 ORTHO05D008594 4.4e-34 148.3 123 52.8
Mapoly0029s0104 Marchantia polymorpha HOM05D006951 ORTHO05D008594 6.0e-31 137.9 112 55.4
AagrBONN_evm.TU.Sc2ySwM_368.1351 Anthoceros agrestis HOM05D006951 ORTHO05D008594 1.7e-30 136.3 127 48.8
AagrBONN_evm.TU.Sc2ySwM_340.899 Anthoceros agrestis HOM05D006951 ORTHO05D008594 3.9e-30 135.2 127 49.6
CSS0013835 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 8.6e-30 134.0 74 85.1
TPR.G32820 Trifolium pratense HOM05D006951 ORTHO05D008594 5.6e-29 131.3 82 74.4
SMO118G0389 Selaginella moellendorffii HOM05D006951 ORTHO05D008594 3.6e-28 128.6 120 50.8
HPP92_025582 Vanilla planifolia HOM05D006951 ORTHO05D008594 8.9e-27 124.0 150 43.3
AT5G03455 Arabidopsis thaliana HOM05D006951 ORTHO05D008594 7.6e-26 120.9 75 77.3
PGR004G2181 Punica granatum HOM05D006951 ORTHO05D008594 2.1e-20 102.8 68 73.5
Atru.chr8.1773 Acer truncatum HOM05D006951 ORTHO05D008594 3.1e-19 99.0 51 84.3
BcaC06g32064 Brassica carinata HOM05D006951 ORTHO05D008594 8.4e-17 90.9 50 76.0
CSS0008283 Camellia sinensis var. sinensis HOM05D006951 ORTHO05D008594 2.4e-16 89.4 50 72.0
TPR.G15158 Trifolium pratense HOM05D006951 ORTHO05D008594 3.2e-16 89.0 50 72.0
Os10g0545700 Oryza sativa ssp. japonica HOM05D006951 ORTHO05D008594 4.6e-15 85.1 51 66.7
Haze_20905 Corylus avellana HOM05D006951 ORTHO05D008594 1.4e-08 63.5 36 86.1
Hund14405 Selenicereus undatus HOM05D004066 ORTHO05D004434 4.6e-07 58.5 43 58.1
Hund00749 Selenicereus undatus HOM05D004066 ORTHO05D004434 1.3e-06 57.0 43 55.8


User provided reference genes

Program Settings