Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 1.1e-161 573.2 286 100.0
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 5.7e-129 464.5 261 88.9
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 5.0e-125 451.4 284 79.9
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 5.6e-124 448.0 285 80.4
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 1.2e-123 446.8 280 80.0
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 4.0e-122 441.8 286 79.4
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 4.4e-121 438.3 265 81.5
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 4.4e-121 438.3 269 80.7
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 4.4e-121 438.3 282 79.1
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 1.3e-120 436.8 284 76.4
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.3e-120 436.8 285 76.5
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.3e-120 436.8 284 76.4
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.7e-120 436.4 284 78.2
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.7e-120 436.4 267 80.9
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 1.7e-120 436.4 258 84.5
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 2.2e-120 436.0 266 82.7
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.9e-120 435.6 284 76.1
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.9e-120 435.6 284 76.1
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 2.9e-120 435.6 285 78.9
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 6.4e-120 434.5 257 82.9
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 8.3e-120 434.1 267 80.5
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.4e-119 433.3 286 77.3
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 5.4e-119 431.4 286 76.9
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 1.2e-118 430.3 283 78.1
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 1.6e-118 429.9 282 79.1
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 2.7e-118 429.1 290 76.2
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 2.7e-118 429.1 282 78.0
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 3.5e-118 428.7 311 71.7
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 4.6e-118 428.3 283 77.0
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 7.8e-118 427.6 258 82.2
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 1.7e-117 426.4 282 77.3
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 6.6e-117 424.5 286 76.6
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 6.6e-117 424.5 280 77.5
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 1.5e-116 423.3 258 81.0
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 4.3e-116 421.8 276 76.4
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 5.6e-116 421.4 258 80.6
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 5.6e-116 421.4 271 80.4
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 1.2e-115 420.2 285 75.4
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 1.2e-115 420.2 299 74.2
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.6e-115 419.9 275 77.8
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 2.8e-115 419.1 281 75.4
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 2.8e-115 419.1 277 76.5
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 8.0e-115 417.5 286 73.8
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 8.9e-114 414.1 256 78.9
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.2e-113 413.7 285 72.6
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 2.6e-113 412.5 276 76.1
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 4.4e-113 411.8 280 75.0
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 7.5e-113 411.0 280 76.4
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 1.3e-112 410.2 281 75.1
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 3.7e-112 408.7 284 75.7
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 4.9e-112 408.3 261 77.8
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 1.1e-111 407.1 285 74.0
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 1.4e-111 406.8 263 76.8
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.4e-111 406.0 265 75.8
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.2e-111 405.6 262 76.0
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 9.2e-111 404.1 264 76.1
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 9.2e-111 404.1 265 75.1
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 9.2e-111 404.1 283 73.1
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 1.2e-110 403.7 277 74.4
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 1.6e-110 403.3 266 76.3
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 6.0e-110 401.4 282 72.7
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.0e-109 400.6 283 73.5
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 1.7e-109 399.8 288 72.6
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 2.3e-109 399.4 277 73.3
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 5.0e-109 398.3 280 73.2
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 6.6e-109 397.9 260 76.5
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 1.9e-108 396.4 280 72.9
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 2.5e-108 396.0 270 72.6
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 2.5e-108 396.0 286 72.4
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 5.6e-108 394.8 283 72.4
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 1.6e-107 393.3 265 76.2
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 2.8e-107 392.5 283 71.0
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 3.6e-107 392.1 320 64.1
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 8.1e-107 391.0 263 74.5
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 1.4e-106 390.2 209 88.0
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 4.0e-106 388.7 284 71.1
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 4.0e-106 388.7 284 71.5
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 5.2e-106 388.3 284 71.5
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 6.8e-106 387.9 287 71.1
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 6.8e-106 387.9 287 71.1
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 6.8e-106 387.9 285 70.9
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 1.2e-105 387.1 282 70.6
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 2.6e-105 386.0 285 70.2
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 2.6e-105 386.0 285 70.5
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 3.4e-105 385.6 292 69.5
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 3.4e-105 385.6 292 69.5
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 3.4e-105 385.6 261 73.6
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 7.5e-105 384.4 275 71.6
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 9.8e-105 384.0 285 70.5
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 1.3e-104 383.6 244 77.5
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 3.7e-104 382.1 261 72.8
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 2.4e-103 379.4 257 73.9
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 2.4e-103 379.4 317 64.7
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 7.1e-103 377.9 255 74.1
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 3.9e-101 372.1 220 80.0
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 6.6e-101 371.3 262 70.6
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 5.6e-100 368.2 279 69.5
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 2.1e-99 366.3 280 68.6
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 3.6e-99 365.5 273 68.1
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 1.8e-98 363.2 206 82.5
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.4e-95 353.6 254 69.7
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.6e-91 340.1 265 67.5
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 2.8e-91 339.3 297 62.3
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 2.8e-91 339.3 300 62.0
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 2.6e-89 332.8 236 73.7
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 5.8e-89 331.6 267 65.9
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 1.3e-88 330.5 253 62.1
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 5.4e-87 325.1 268 64.2
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 3.0e-85 319.3 267 64.4
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 2.3e-77 293.1 192 74.5
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 6.6e-77 291.6 203 72.4
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 6.2e-75 285.0 212 68.4
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 8.1e-75 284.6 322 50.9
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 4.0e-74 282.3 174 78.2
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 6.9e-74 281.6 254 57.9
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 3.8e-72 275.8 192 72.9
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 3.0e-69 266.2 181 74.6
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 1.1e-68 264.2 192 70.3
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 1.4e-63 247.3 271 48.3
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 9.3e-63 244.6 202 55.9
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 1.3e-59 234.2 216 54.6
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 3.6e-54 216.1 283 49.5
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 1.3e-51 207.6 170 60.6
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.7e-43 179.5 224 47.8
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 1.1e-42 177.9 239 42.3
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 2.3e-37 160.2 207 39.1
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 1.7e-32 144.1 87 86.2
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 1.5e-28 131.0 83 83.1
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 5.7e-28 129.0 170 40.0
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 4.8e-27 125.9 278 32.4
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 3.6e-22 109.8 57 91.2
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 8.0e-22 108.6 54 94.4
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 1.8e-18 97.4 52 86.5
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.7e-08 64.3 153 31.4
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 3.8e-08 63.2 183 29.0
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 3.8e-08 63.2 180 26.7
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 5.0e-08 62.8 56 60.7
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 8.6e-08 62.0 176 27.8
FvH4_2g13931 Fragaria vesca HOM05D051764 ORTHO05D035649 2.5e-07 60.5 49 65.3
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 5.6e-07 59.3 187 26.7
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 7.3e-07 58.9 184 28.3
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.3e-07 58.9 187 25.7
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 7.3e-07 58.9 182 24.7
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 1.2e-06 58.2 184 27.7
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 1.2e-06 58.2 194 27.8
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 1.6e-06 57.8 183 27.9
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.8e-06 57.0 193 25.4
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 6.1e-06 55.8 183 28.4
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 8.0e-06 55.5 154 27.3


User provided reference genes

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