Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011952m.g Citrus clementina HOM05D005749 ORTHO05D007208 7.0e-207 723.8 384 100.0
Prupe.6G244800 Prunus persica HOM05D005749 ORTHO05D007208 7.4e-140 501.1 384 72.4
Actinidia11228 Actinidia chinensis HOM05D005749 ORTHO05D007208 1.7e-136 490.0 389 71.7
MD04G1111300 Malus domestica HOM05D005749 ORTHO05D007208 6.5e-136 488.0 384 72.1
Potri.006G133900 Populus trichocarpa HOM05D005749 ORTHO05D007208 1.1e-135 487.3 387 71.6
COL.COLO4_10301 Corchorus olitorius HOM05D005749 ORTHO05D007208 3.2e-135 485.7 390 72.1
RcHm_v2.0_Chr3g0468141 Rosa chinensis HOM05D005749 ORTHO05D007208 1.6e-134 483.4 387 70.3
Haze_20679 Corylus avellana HOM05D005749 ORTHO05D007208 2.3e-133 479.6 388 71.4
QL07p045817 Quercus lobata HOM05D005749 ORTHO05D007208 1.1e-132 477.2 388 70.1
Gorai.002G252100 Gossypium raimondii HOM05D005749 ORTHO05D007208 3.3e-132 475.7 384 69.8
CSS0045869 Camellia sinensis var. sinensis HOM05D005749 ORTHO05D007208 4.4e-132 475.3 386 69.4
Nitab4.5_0002073g0030 Nicotiana tabacum HOM05D005749 ORTHO05D007208 4.4e-132 475.3 392 69.4
THA.LOC104816307 Tarenaya hassleriana HOM05D005749 ORTHO05D007208 4.4e-132 475.3 386 68.9
Gohir.D01G207000 Gossypium hirsutum HOM05D005749 ORTHO05D007208 5.7e-132 474.9 384 69.8
Duzib093G1962 Durio zibethinus HOM05D005749 ORTHO05D007208 1.3e-131 473.8 384 71.1
Gohir.A01G218100 Gossypium hirsutum HOM05D005749 ORTHO05D007208 2.8e-131 472.6 384 69.5
Sp6g31500 Schrenkiella parvula HOM05D005749 ORTHO05D007208 2.8e-131 472.6 384 68.8
PGR004G0882 Punica granatum HOM05D005749 ORTHO05D007208 3.7e-131 472.2 389 69.4
Thhalv10013777m.g Eutrema salsugineum HOM05D005749 ORTHO05D007208 2.4e-130 469.5 386 67.6
Eucgr.K03191 Eucalyptus grandis HOM05D005749 ORTHO05D007208 1.2e-129 467.2 384 68.5
Dinv35687 Davidia involucrata HOM05D005749 ORTHO05D007208 2.0e-129 466.5 332 75.3
Cfa017475 Carpinus fangiana HOM05D005749 ORTHO05D007208 7.7e-129 464.5 373 70.8
TAR623G1622 Trochodendron aralioides HOM05D005749 ORTHO05D007208 7.7e-129 464.5 390 66.9
FAN02G1517 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.0e-128 464.2 386 70.2
AL6G22910 Arabidopsis lyrata HOM05D005749 ORTHO05D007208 2.2e-128 463.0 384 68.0
CiPaw.10G138600 Carya illinoinensis HOM05D005749 ORTHO05D007208 2.2e-128 463.0 402 66.9
Ca_02301_v3 Cicer arietinum L. HOM05D005749 ORTHO05D007208 2.2e-128 463.0 384 68.0
Carub.0006s1064 Capsella rubella HOM05D005749 ORTHO05D007208 6.5e-128 461.5 387 67.4
FvH4_6g14940 Fragaria vesca HOM05D005749 ORTHO05D007208 2.5e-127 459.5 386 68.4
FAN14G3553 Fragaria x ananassa HOM05D005749 ORTHO05D007208 2.5e-127 459.5 386 68.4
AT5G12130 Arabidopsis thaliana HOM05D005749 ORTHO05D007208 3.2e-127 459.1 383 68.1
FAN05G4959 Fragaria x ananassa HOM05D005749 ORTHO05D007208 7.2e-127 458.0 386 69.4
BcaNung06325 Brassica carinata HOM05D005749 ORTHO05D007208 2.1e-126 456.4 383 67.9
Thecc.05G051000 Theobroma cacao HOM05D005749 ORTHO05D007208 2.1e-126 456.4 386 69.2
Medtr1g067200 Medicago truncatula HOM05D005749 ORTHO05D007208 4.7e-126 455.3 385 67.3
Glyma.10G047600 Glycine max HOM05D005749 ORTHO05D007208 8.0e-126 454.5 385 68.1
Sc07g0006200 Simmondsia chinensis HOM05D005749 ORTHO05D007208 8.0e-126 454.5 388 66.0
BolC9t59305H Brassica oleracea HOM05D005749 ORTHO05D007208 1.4e-125 453.8 382 68.1
Aa31LG3G15070 Aethionema arabicum HOM05D005749 ORTHO05D007208 2.3e-125 453.0 337 72.7
C09p64740 Brassica napus HOM05D005749 ORTHO05D007208 2.3e-125 453.0 382 68.1
Solyc10g085980.2 Solanum lycopersicum HOM05D005749 ORTHO05D007208 3.0e-125 452.6 387 66.7
Aqoxy2G01923 Aquilegia oxysepala HOM05D005749 ORTHO05D007208 4.0e-125 452.2 400 66.0
Lj5g0012474 Lotus japonicus HOM05D005749 ORTHO05D007208 6.7e-125 451.4 387 67.4
RhsimUnG0120200 Rhododendron simsii HOM05D005749 ORTHO05D007208 6.7e-125 451.4 347 72.6
Sopen10g035350 Solanum pennellii HOM05D005749 ORTHO05D007208 8.8e-125 451.1 387 66.1
TPR.G35663 Trifolium pratense HOM05D005749 ORTHO05D007208 1.5e-124 450.3 384 66.7
VMungo0720G0421 Vigna mungo HOM05D005749 ORTHO05D007208 1.3e-123 447.2 385 66.0
C02p05630 Brassica napus HOM05D005749 ORTHO05D007208 1.7e-123 446.8 392 66.6
CAN.G933.18 Capsicum annuum HOM05D005749 ORTHO05D007208 1.7e-123 446.8 387 65.4
Lj2A105T62 Lonicera japonica HOM05D005749 ORTHO05D007208 1.7e-123 446.8 394 66.2
Lalb_Chr02g0153481 Lupinus albus HOM05D005749 ORTHO05D007208 1.7e-123 446.8 389 64.0
arahy.Tifrunner.gnm1.ann1.F15EJL Arachis hypogaea HOM05D005749 ORTHO05D007208 2.8e-123 446.0 390 64.4
Cc06_g03360 Coffea canephora HOM05D005749 ORTHO05D007208 2.8e-123 446.0 359 68.5
A10p25670 Brassica napus HOM05D005749 ORTHO05D007208 4.8e-123 445.3 382 67.3
BraA10t44632Z Brassica rapa HOM05D005749 ORTHO05D007208 4.8e-123 445.3 382 67.3
GSVIVG01025567001 Vitis vinifera HOM05D005749 ORTHO05D007208 4.8e-123 445.3 390 66.4
PGSC0003DMG400017609 Solanum tuberosum HOM05D005749 ORTHO05D007208 5.3e-122 441.8 389 65.3
BraA02t05118Z Brassica rapa HOM05D005749 ORTHO05D007208 9.1e-122 441.0 322 75.2
CsaV3_4G024440 Cucumis sativus L. HOM05D005749 ORTHO05D007208 1.2e-121 440.7 391 63.9
Migut.J00398 Erythranthe guttata HOM05D005749 ORTHO05D007208 1.6e-121 440.3 409 63.1
A02p01390 Brassica napus HOM05D005749 ORTHO05D007208 2.0e-121 439.9 322 75.2
Glyma.13G135400 Glycine max HOM05D005749 ORTHO05D007208 2.7e-121 439.5 353 71.4
vmacro20079 Vaccinium macrocarpon HOM05D005749 ORTHO05D007208 2.7e-121 439.5 429 62.5
HanXRQChr11g0349581 Helianthus annuus HOM05D005749 ORTHO05D007208 3.5e-121 439.1 385 67.5
ECA248G2107 Erigeron canadensis HOM05D005749 ORTHO05D007208 4.5e-121 438.7 385 66.8
PSO339G5588 Papaver somniferum HOM05D005749 ORTHO05D007208 4.5e-121 438.7 392 65.3
CARHR200990 Cardamine hirsuta HOM05D005749 ORTHO05D007208 1.0e-120 437.6 294 80.6
FAN09G3437 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.0e-120 437.6 387 67.4
AUR62016425 Chenopodium quinoa HOM05D005749 ORTHO05D007208 2.9e-120 436.0 352 69.3
MELO3C003076.2 Cucumis melo HOM05D005749 ORTHO05D007208 2.9e-120 436.0 391 63.9
ClCG04G008720 Citrullus lanatus HOM05D005749 ORTHO05D007208 6.5e-120 434.9 397 64.0
PSO384G0170 Papaver somniferum HOM05D005749 ORTHO05D007208 1.5e-119 433.7 391 64.2
Lalb_Chr20g0112991 Lupinus albus HOM05D005749 ORTHO05D007208 9.4e-119 431.0 365 67.7
SalBow3G2006 Salvia bowleyana HOM05D005749 ORTHO05D007208 2.3e-117 426.4 323 71.5
SGA_v2.0_scaffold75G24898 Striga asiatica HOM05D005749 ORTHO05D007208 2.2e-115 419.9 395 60.5
Atru.chr8.2516 Acer truncatum HOM05D005749 ORTHO05D007208 4.1e-114 415.6 299 76.6
Lsat_1_v5_gn_1_53521 Lactuca sativa HOM05D005749 ORTHO05D007208 4.1e-114 415.6 389 64.5
Hma1.2p1_0350F.1_g132660 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 2.7e-113 412.9 259 81.5
Manes.08G001100 Manihot esculenta HOM05D005749 ORTHO05D007208 1.9e-111 406.8 334 69.2
BolC2t06507H Brassica oleracea HOM05D005749 ORTHO05D007208 1.2e-110 404.1 247 85.0
unitig_27.g25368 Utricularia gibba HOM05D005749 ORTHO05D007208 1.4e-109 400.6 320 69.1
CANSAT80G2775 Cannabis sativa HOM05D005749 ORTHO05D007208 9.8e-108 394.4 324 68.5
Sed0002515 Sechium edule HOM05D005749 ORTHO05D007208 1.3e-107 394.0 358 63.4
HPP92_000647 Vanilla planifolia HOM05D005749 ORTHO05D007208 6.3e-107 391.7 389 59.6
DCAR_014958 Daucus carota HOM05D005749 ORTHO05D007208 1.1e-106 391.0 391 60.9
Nitab4.5_0000754g0010 Nicotiana tabacum HOM05D005749 ORTHO05D007208 1.1e-106 391.0 420 57.4
HPP92_000699 Vanilla planifolia HOM05D005749 ORTHO05D007208 3.3e-103 379.4 321 65.7
arahy.Tifrunner.gnm1.ann1.SNR3S1 Arachis hypogaea HOM05D005749 ORTHO05D007208 5.6e-103 378.6 531 48.4
Os05g0121200 Oryza sativa ssp. japonica HOM05D005749 ORTHO05D007208 2.1e-102 376.7 319 64.6
Zm00001eb265640 Zea mays HOM05D005749 ORTHO05D007208 2.1e-102 376.7 304 66.4
arahy.Tifrunner.gnm1.ann1.V0P37H Arachis hypogaea HOM05D005749 ORTHO05D007208 3.6e-102 375.9 536 47.6
arahy.Tifrunner.gnm1.ann1.R14JEG Arachis hypogaea HOM05D005749 ORTHO05D007208 4.7e-102 375.6 343 61.8
Zm00001eb355290 Zea mays HOM05D005749 ORTHO05D007208 8.9e-101 371.3 308 65.6
MBI13_g05975_MAGBIO Magnolia biondii HOM05D005749 ORTHO05D007208 7.5e-100 368.2 309 67.3
Oeu029112.2 Olea europaea HOM05D000267 ORTHO05D000298 1.1e-98 364.4 242 79.8
Hund12066 Selenicereus undatus HOM05D005749 ORTHO05D007208 1.6e-97 360.5 325 65.8
Mapoly0068s0066 Marchantia polymorpha HOM05D005749 ORTHO05D007208 7.8e-97 358.2 267 70.0
EL10Ac7g17315 Beta vulgaris HOM05D005749 ORTHO05D007208 8.6e-96 354.8 401 54.9
Pp3c12_18750 Physcomitrium patens HOM05D005749 ORTHO05D007208 1.5e-95 354.0 289 66.8
MD12G1129500 Malus domestica HOM05D005749 ORTHO05D007208 8.0e-94 348.2 370 57.8
FAN09G4246 Fragaria x ananassa HOM05D005749 ORTHO05D007208 1.0e-93 347.8 209 86.6
AagrBONN_evm.TU.Sc2ySwM_362.1198 Anthoceros agrestis HOM05D005749 ORTHO05D007208 3.1e-93 346.3 268 66.8
Sabra06G0105200 Salix brachista HOM05D005749 ORTHO05D007208 9.2e-90 334.7 428 52.8
Hma1.2p1_0350F.1_g132650 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 3.0e-88 329.7 355 58.0
Psat6g125120 Pisum sativum HOM05D005749 ORTHO05D007208 1.9e-87 327.0 323 61.0
Ah.08g212020 Amaranthus hybridus HOM05D005749 ORTHO05D007208 4.9e-83 312.4 313 61.3
AUR62011608 Chenopodium quinoa HOM05D005749 ORTHO05D007208 1.2e-81 307.8 396 52.8
MCO03G081 Micromonas commoda HOM05D005749 ORTHO05D007208 1.6e-81 307.4 274 59.1
MCO03G201 Micromonas commoda HOM05D005749 ORTHO05D007208 3.9e-80 302.8 263 60.5
Peaxi162Scf00146g01323 Petunia axillaris HOM05D005749 ORTHO05D007208 4.9e-75 285.8 178 84.3
Cpa.g.sc114.34 Carica papaya HOM05D005749 ORTHO05D007208 6.0e-73 278.9 262 63.0
PRCOL_00003295 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 2.1e-70 270.4 257 56.8
Cre17.g712400 Chlamydomonas reinhardtii HOM05D005749 ORTHO05D007208 2.8e-70 270.0 350 47.7
SMO201G0179 Selaginella moellendorffii HOM05D005749 ORTHO05D007208 3.1e-69 266.5 187 71.7
Phvul.007G161800 Phaseolus vulgaris HOM05D005749 ORTHO05D007208 5.4e-66 255.8 275 55.3
ATR0594G051 Amborella trichopoda HOM05D005749 ORTHO05D007208 9.6e-63 245.0 157 78.3
PRCOL_00006447 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 4.5e-60 236.1 261 49.4
Actinidia19727 Actinidia chinensis HOM05D005749 ORTHO05D007208 4.3e-55 219.5 129 84.5
SEGI_07760 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 1.3e-51 208.0 206 56.8
RcHm_v2.0_Chr2g0168111 Rosa chinensis HOM05D005749 ORTHO05D007208 2.9e-51 206.8 128 82.8
Cpa.g.sc114.35 Carica papaya HOM05D005749 ORTHO05D007208 7.1e-50 202.2 115 91.3
PRCOL_00000418 Prasinoderma coloniale HOM05D005749 ORTHO05D007208 8.7e-40 168.7 253 39.1
Hma1.2p1_0111F.1_g053580 Hydrangea macrophylla HOM05D005749 ORTHO05D007208 1.9e-39 167.5 105 79.0
CDE09G0524 Ceratophyllum demersum HOM05D005749 ORTHO05D007208 3.2e-26 123.6 176 43.8
CBR_g5606 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-25 120.6 192 35.9
SEGI_12651 Sequoiadendron giganteum HOM05D005749 ORTHO05D007208 6.1e-25 119.4 128 61.7
Lsat_1_v5_gn_1_79620 Lactuca sativa HOM05D005749 ORTHO05D007208 9.7e-23 112.1 90 68.9
Actinidia19728 Actinidia chinensis HOM05D005749 ORTHO05D007208 9.7e-15 85.5 152 44.1
Dinv03750 Davidia involucrata HOM05D005749 ORTHO05D007208 4.5e-12 76.6 41 95.1
Peaxi162Scf00146g01322 Petunia axillaris HOM05D005749 ORTHO05D007208 2.7e-09 67.4 115 41.7
MCO11G480 Micromonas commoda HOM05D005749 ORTHO05D007208 1.8e-08 64.7 244 24.6
Dinv06973 Davidia involucrata HOM05D005749 ORTHO05D007208 2.3e-08 64.3 36 86.1
CBR_g41620 Chara braunii HOM05D005749 ORTHO05D007208 9.7e-07 58.9 51 58.8


User provided reference genes

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