Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011831m.g Citrus clementina HOM05D004552 ORTHO05D005501 2.6e-215 751.9 421 100.0
Atru.chr8.2543 Acer truncatum HOM05D004552 ORTHO05D005501 2.6e-154 549.3 426 75.4
Thecc.05G052700 Theobroma cacao HOM05D004552 ORTHO05D005501 2.4e-152 542.7 422 73.7
Duzib106G1297 Durio zibethinus HOM05D004552 ORTHO05D005501 9.9e-146 520.8 422 72.5
ClCG04G008790 Citrullus lanatus HOM05D004552 ORTHO05D005501 6.4e-145 518.1 427 69.3
MELO3C014263.2 Cucumis melo HOM05D004552 ORTHO05D005501 7.1e-144 514.6 422 72.5
CsaV3_4G024350 Cucumis sativus L. HOM05D004552 ORTHO05D005501 3.5e-143 512.3 420 72.6
TWI53G0358 Tripterygium wilfordii HOM05D004552 ORTHO05D005501 6.0e-143 511.5 432 69.4
Dinv37242 Davidia involucrata HOM05D004552 ORTHO05D005501 1.8e-142 510.0 423 71.2
Sed0010830 Sechium edule HOM05D004552 ORTHO05D005501 2.3e-142 509.6 422 69.7
QL07p045485 Quercus lobata HOM05D004552 ORTHO05D005501 1.5e-138 496.9 425 71.3
Actinidia19722 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.6e-138 496.1 420 69.3
COL.COLO4_27097 Corchorus olitorius HOM05D004552 ORTHO05D005501 9.9e-138 494.2 339 78.8
ClCG10G016170 Citrullus lanatus HOM05D004552 ORTHO05D005501 1.7e-137 493.4 416 68.0
Manes.08G002200 Manihot esculenta HOM05D004552 ORTHO05D005501 2.9e-137 492.7 413 71.4
Ca_22379_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 4.9e-137 491.9 425 68.5
Gohir.A03G063400 Gossypium hirsutum HOM05D004552 ORTHO05D005501 6.4e-137 491.5 352 75.6
Haze_20666 Corylus avellana HOM05D004552 ORTHO05D005501 1.1e-136 490.7 418 73.0
Ca_19605_v3 Cicer arietinum L. HOM05D004552 ORTHO05D005501 3.2e-136 489.2 425 68.7
Manes.09G079900 Manihot esculenta HOM05D004552 ORTHO05D005501 5.5e-136 488.4 424 66.7
Cfa017496 Carpinus fangiana HOM05D004552 ORTHO05D005501 1.6e-135 486.9 419 71.6
PGR004G2024 Punica granatum HOM05D004552 ORTHO05D005501 2.1e-135 486.5 424 69.3
Gorai.003G108400 Gossypium raimondii HOM05D004552 ORTHO05D005501 7.9e-135 484.6 352 75.3
Gohir.D03G102900 Gossypium hirsutum HOM05D004552 ORTHO05D005501 1.3e-134 483.8 352 75.3
Lj3g0026232 Lotus japonicus HOM05D004552 ORTHO05D005501 1.3e-134 483.8 424 67.0
Lj5g0019559 Lotus japonicus HOM05D004552 ORTHO05D005501 3.9e-134 482.3 424 66.7
CiPaw.09G181100 Carya illinoinensis HOM05D004552 ORTHO05D005501 5.1e-134 481.9 421 71.5
RcHm_v2.0_Chr1g0360161 Rosa chinensis HOM05D004552 ORTHO05D005501 1.5e-133 480.3 422 68.2
Lj4g0012826 Lotus japonicus HOM05D004552 ORTHO05D005501 5.6e-133 478.4 424 66.7
MSTRG.16520 Avicennia marina HOM05D004552 ORTHO05D005501 7.4e-133 478.0 423 68.6
TAR369G0596 Trochodendron aralioides HOM05D004552 ORTHO05D005501 7.4e-133 478.0 426 67.1
Medtr8g075790 Medicago truncatula HOM05D004552 ORTHO05D005501 9.6e-133 477.6 426 68.3
arahy.Tifrunner.gnm1.ann1.CZIV0N Arachis hypogaea HOM05D004552 ORTHO05D005501 1.3e-132 477.2 424 69.3
Rhsim10G0168100 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.8e-132 475.3 417 66.9
TPR.G33503 Trifolium pratense HOM05D004552 ORTHO05D005501 4.8e-132 475.3 424 66.7
arahy.Tifrunner.gnm1.ann1.LN9G9C Arachis hypogaea HOM05D004552 ORTHO05D005501 6.2e-132 474.9 424 69.1
Rhsim11G0041500 Rhododendron simsii HOM05D004552 ORTHO05D005501 6.2e-132 474.9 417 66.7
arahy.Tifrunner.gnm1.ann1.6MTV2V Arachis hypogaea HOM05D004552 ORTHO05D005501 8.2e-132 474.6 424 69.1
Hund08942 Selenicereus undatus HOM05D004552 ORTHO05D005501 1.2e-130 470.7 417 66.7
arahy.Tifrunner.gnm1.ann1.URH0Q0 Arachis hypogaea HOM05D004552 ORTHO05D005501 3.4e-130 469.2 424 68.2
Oeu029550.1 Olea europaea HOM05D004552 ORTHO05D005501 3.4e-130 469.2 418 67.9
Psat7g019080 Pisum sativum HOM05D004552 ORTHO05D005501 5.8e-130 468.4 445 65.2
Potri.016G084200 Populus trichocarpa HOM05D004552 ORTHO05D005501 4.9e-129 465.3 419 67.5
Medtr6g089780 Medicago truncatula HOM05D004552 ORTHO05D005501 1.1e-128 464.2 425 66.1
RcHm_v2.0_Chr1g0361081 Rosa chinensis HOM05D004552 ORTHO05D005501 1.1e-128 464.2 423 65.2
CSS0033785 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.2e-128 462.6 420 65.2
AUR62025361 Chenopodium quinoa HOM05D004552 ORTHO05D005501 3.2e-128 462.6 419 65.9
Rhsim11G0041800 Rhododendron simsii HOM05D004552 ORTHO05D005501 4.2e-128 462.2 417 65.7
EL10Ac7g16819 Beta vulgaris HOM05D004552 ORTHO05D005501 1.6e-127 460.3 419 64.7
Prupe.2G197600 Prunus persica HOM05D004552 ORTHO05D005501 2.7e-127 459.5 422 66.4
THA.LOC104823245 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 6.0e-127 458.4 434 65.0
AUR62028362 Chenopodium quinoa HOM05D004552 ORTHO05D005501 1.8e-126 456.8 419 65.6
PSO832G0086 Papaver somniferum HOM05D004552 ORTHO05D005501 6.7e-126 454.9 427 66.5
Lalb_Chr05g0229841 Lupinus albus HOM05D004552 ORTHO05D005501 4.3e-125 452.2 426 64.8
Nn1g07079 Nelumbo nucifera HOM05D004552 ORTHO05D005501 5.7e-125 451.8 424 67.9
Glyma.08G287300 Glycine max HOM05D004552 ORTHO05D005501 3.7e-124 449.1 422 65.6
Nitab4.5_0008076g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.8e-124 448.7 417 65.2
PSO210G6420 Papaver somniferum HOM05D004552 ORTHO05D005501 8.2e-124 448.0 426 65.5
Oeu026072.1 Olea europaea HOM05D004552 ORTHO05D005501 3.1e-123 446.0 422 65.2
Sp6g39730 Schrenkiella parvula HOM05D004552 ORTHO05D005501 2.0e-122 443.4 434 63.8
FvH4_7g17650 Fragaria vesca HOM05D004552 ORTHO05D005501 4.5e-122 442.2 424 63.9
FAN03G3426 Fragaria x ananassa HOM05D004552 ORTHO05D005501 7.6e-122 441.4 420 62.4
SalBow4G1233 Salvia bowleyana HOM05D004552 ORTHO05D005501 7.6e-122 441.4 420 64.5
Migut.K00511 Erythranthe guttata HOM05D004552 ORTHO05D005501 1.3e-121 440.7 418 64.8
Solyc02g087180.4 Solanum lycopersicum HOM05D004552 ORTHO05D005501 1.7e-121 440.3 421 64.8
Ah.14g084480 Amaranthus hybridus HOM05D004552 ORTHO05D005501 2.2e-121 439.9 419 61.3
FvH4_7g16920 Fragaria vesca HOM05D004552 ORTHO05D005501 2.2e-121 439.9 420 62.6
Manes.09G080009 Manihot esculenta HOM05D004552 ORTHO05D005501 2.2e-121 439.9 341 71.3
Sopen02g031920 Solanum pennellii HOM05D004552 ORTHO05D005501 2.2e-121 439.9 421 65.3
Lj6g0002066 Lotus japonicus HOM05D004552 ORTHO05D005501 3.8e-121 439.1 422 62.8
Nitab4.5_0001952g0150 Nicotiana tabacum HOM05D004552 ORTHO05D005501 1.1e-120 437.6 420 64.0
FAN01G0370 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-120 437.2 420 62.4
DCAR_009290 Daucus carota HOM05D004552 ORTHO05D005501 2.5e-120 436.4 425 62.1
Nitab4.5_0005206g0040 Nicotiana tabacum HOM05D004552 ORTHO05D005501 4.2e-120 435.6 418 65.6
Thhalv10013588m.g Eutrema salsugineum HOM05D004552 ORTHO05D005501 5.5e-120 435.3 439 60.8
Nitab4.5_0006780g0010 Nicotiana tabacum HOM05D004552 ORTHO05D005501 5.5e-120 435.3 416 63.9
CANSAT56G3582 Cannabis sativa HOM05D004552 ORTHO05D005501 9.3e-120 434.5 419 66.3
VMungo0251G2800 Vigna mungo HOM05D004552 ORTHO05D005501 9.3e-120 434.5 421 63.2
AT5G02850 Arabidopsis thaliana HOM05D004552 ORTHO05D005501 1.2e-119 434.1 419 64.0
FAN06G4506 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.2e-119 434.1 420 62.1
Glyma.06G188800 Glycine max HOM05D004552 ORTHO05D005501 6.1e-119 431.8 424 63.9
Cc00_g23990 Coffea canephora HOM05D004552 ORTHO05D005501 1.4e-118 430.6 420 63.8
CARHR210480 Cardamine hirsuta HOM05D004552 ORTHO05D005501 2.3e-118 429.9 432 62.5
CAN.G525.45 Capsicum annuum HOM05D004552 ORTHO05D005501 3.0e-118 429.5 420 63.6
AL6G12120 Arabidopsis lyrata HOM05D004552 ORTHO05D005501 3.9e-118 429.1 420 63.3
Phvul.003G261400 Phaseolus vulgaris HOM05D004552 ORTHO05D005501 3.9e-118 429.1 422 64.7
Aqoxy4G02198 Aquilegia oxysepala HOM05D004552 ORTHO05D005501 6.7e-118 428.3 434 65.0
BcaC06g32015 Brassica carinata HOM05D004552 ORTHO05D005501 8.8e-118 427.9 431 61.9
Glyma.13G067700 Glycine max HOM05D004552 ORTHO05D005501 1.9e-117 426.8 420 63.8
Aa31LG1G22060 Aethionema arabicum HOM05D004552 ORTHO05D005501 3.3e-117 426.0 425 61.9
Peaxi162Scf00569g00015 Petunia axillaris HOM05D004552 ORTHO05D005501 3.3e-117 426.0 422 63.7
C09p73810 Brassica napus HOM05D004552 ORTHO05D005501 5.7e-117 425.2 429 61.8
BolC9t60115H Brassica oleracea HOM05D004552 ORTHO05D005501 5.7e-117 425.2 429 61.8
Carub.0006s0165 Capsella rubella HOM05D004552 ORTHO05D005501 5.7e-117 425.2 424 62.5
FAN06G0991 Fragaria x ananassa HOM05D004552 ORTHO05D005501 5.7e-117 425.2 420 63.8
TPR.G27980 Trifolium pratense HOM05D004552 ORTHO05D005501 3.7e-116 422.5 347 68.9
A10p32880 Brassica napus HOM05D004552 ORTHO05D005501 4.8e-116 422.2 425 61.4
FAN03G1811 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.1e-115 421.0 423 61.0
CAN.G206.55 Capsicum annuum HOM05D004552 ORTHO05D005501 1.4e-115 420.6 421 64.1
FAN06G3324 Fragaria x ananassa HOM05D004552 ORTHO05D005501 1.4e-115 420.6 408 61.8
Sc07g0006230 Simmondsia chinensis HOM05D004552 ORTHO05D005501 1.8e-115 420.2 416 63.5
Solyc04g014240.1 Solanum lycopersicum HOM05D004552 ORTHO05D005501 2.6e-114 416.4 420 65.0
DCAR_002493 Daucus carota HOM05D004552 ORTHO05D005501 1.3e-113 414.1 424 60.6
Sopen04g006350 Solanum pennellii HOM05D004552 ORTHO05D005501 1.7e-113 413.7 420 64.8
HanXRQChr05g0156781 Helianthus annuus HOM05D004552 ORTHO05D005501 3.8e-113 412.5 420 60.0
unitig_899.g15236 Utricularia gibba HOM05D004552 ORTHO05D005501 1.4e-112 410.6 417 61.9
arahy.Tifrunner.gnm1.ann1.52IM1F Arachis hypogaea HOM05D004552 ORTHO05D005501 9.4e-112 407.9 318 75.2
Lj6g0014683 Lotus japonicus HOM05D004552 ORTHO05D005501 2.1e-111 406.8 378 64.6
Lsat_1_v5_gn_5_8941 Lactuca sativa HOM05D004552 ORTHO05D005501 6.1e-111 405.2 419 60.1
ECA246G2681 Erigeron canadensis HOM05D003206 ORTHO05D005207 5.1e-110 402.1 428 60.0
Sabra16G0091200 Salix brachista HOM05D004552 ORTHO05D005501 3.3e-109 399.4 337 68.2
PGSC0003DMG400000510 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.1e-107 392.9 337 68.5
Lj6g0013650 Lotus japonicus HOM05D004552 ORTHO05D005501 2.5e-104 383.3 422 58.8
SHI12593 Sapria himalayana HOM05D004552 ORTHO05D005501 7.2e-104 381.7 427 56.4
CDE04G3741 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 9.4e-104 381.3 416 57.5
Eucgr.J03059 Eucalyptus grandis HOM05D004552 ORTHO05D005501 3.0e-102 376.3 444 56.5
Psat4g100360 Pisum sativum HOM05D004552 ORTHO05D005501 1.1e-101 374.4 351 65.5
Cc03_g15870 Coffea canephora HOM05D004552 ORTHO05D005501 7.4e-101 371.7 420 58.8
SGA_v2.0_scaffold204G41624 Striga asiatica HOM05D004552 ORTHO05D005501 1.1e-99 367.9 428 56.5
vmacro04719 Vaccinium macrocarpon HOM05D004552 ORTHO05D005501 6.5e-97 358.6 332 65.1
MBI18_g25517_MAGBIO Magnolia biondii HOM05D004552 ORTHO05D005501 1.4e-94 350.9 354 63.3
PSO675G1725 Papaver somniferum HOM05D004552 ORTHO05D005501 7.5e-93 345.1 355 59.7
SGA_v2.0_scaffold94G28661 Striga asiatica HOM05D004552 ORTHO05D005501 3.1e-83 313.2 347 58.2
Os09g0540500 Oryza sativa ssp. japonica HOM05D004552 ORTHO05D005501 4.5e-82 309.3 425 49.9
FAN01G0473 Fragaria x ananassa HOM05D004552 ORTHO05D005501 2.3e-81 307.0 420 51.2
HPP92_012944 Vanilla planifolia HOM05D004552 ORTHO05D005501 8.6e-81 305.1 356 53.9
RhsimUnG0119000 Rhododendron simsii HOM05D004552 ORTHO05D005501 3.8e-73 279.6 245 67.3
ATR0950G002 Amborella trichopoda HOM05D004552 ORTHO05D005501 1.5e-72 277.7 367 52.0
ATR0594G066 Amborella trichopoda HOM05D004552 ORTHO05D005501 2.5e-72 276.9 362 52.2
Zm00001eb103820 Zea mays HOM05D004552 ORTHO05D005501 7.5e-69 265.4 424 45.0
CDE07G0444 Ceratophyllum demersum HOM05D004552 ORTHO05D005501 1.7e-65 254.2 289 55.7
SEGI_01207 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 1.6e-63 247.7 379 45.1
C03p01200 Brassica napus HOM05D004552 ORTHO05D005501 5.6e-56 222.6 281 52.7
BolC3t12680H Brassica oleracea HOM05D004552 ORTHO05D005501 5.6e-56 222.6 281 52.7
A03p00930 Brassica napus HOM05D004552 ORTHO05D005501 2.3e-54 217.2 210 60.5
CSS0042772 Camellia sinensis var. sinensis HOM05D004552 ORTHO05D005501 3.1e-54 216.9 236 55.9
THA.LOC104827455 Tarenaya hassleriana HOM05D004552 ORTHO05D005501 2.2e-52 210.7 219 58.4
BcaB01g05872 Brassica carinata HOM05D004552 ORTHO05D005501 1.3e-49 201.4 431 40.6
FvH4_6g20640 Fragaria vesca HOM05D004552 ORTHO05D005501 1.8e-46 191.0 255 51.0
Mapoly0007s0084 Marchantia polymorpha HOM05D004552 ORTHO05D005501 9.9e-45 185.3 279 43.0
Actinidia11233 Actinidia chinensis HOM05D004552 ORTHO05D005501 2.9e-44 183.7 347 42.1
FAN14G1867 Fragaria x ananassa HOM05D004552 ORTHO05D005501 8.4e-44 182.2 176 58.0
SEGI_11500 Sequoiadendron giganteum HOM05D004552 ORTHO05D005501 3.0e-41 173.7 340 40.0
Pp3c14_11490 Physcomitrium patens HOM05D004552 ORTHO05D005501 7.3e-40 169.1 363 38.6
BraA03t09475Z Brassica rapa HOM05D004552 ORTHO05D005501 3.1e-38 163.7 222 47.7
AagrBONN_evm.TU.Sc2ySwM_362.1766 Anthoceros agrestis HOM05D004552 ORTHO05D005501 2.4e-35 154.1 388 35.8
BraA10t45325Z Brassica rapa HOM05D001414 ORTHO05D000619 3.9e-33 146.7 150 60.7
Lsat_1_v5_gn_8_95200 Lactuca sativa HOM05D004552 ORTHO05D005501 3.3e-32 143.7 107 72.9
VMungo0647G0506 Vigna mungo HOM05D004552 ORTHO05D005501 1.6e-31 141.4 109 67.9
PGSC0003DMG400023633 Solanum tuberosum HOM05D004552 ORTHO05D005501 3.5e-26 123.6 168 49.4
Lj3E543T1 Lonicera japonica HOM05D004552 ORTHO05D005501 1.5e-24 118.2 114 65.8
CBR_g38095 Chara braunii HOM05D004552 ORTHO05D005501 1.3e-23 115.2 248 31.9
AagrBONN_evm.TU.Sc2ySwM_344.2458 Anthoceros agrestis HOM05D004552 ORTHO05D005501 1.7e-12 78.2 220 28.6
Cpa.g.sc10.80 Carica papaya HOM05D004552 ORTHO05D005501 1.1e-06 58.9 38 81.6
MCO09G463 Micromonas commoda HOM05D004552 ORTHO05D005501 5.3e-06 56.6 128 33.6


User provided reference genes

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