Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010411m.g Citrus clementina HOM05D004205 ORTHO05D004977 1.7e-45 185.7 92 100.0
Dinv08307 Davidia involucrata HOM05D004205 ORTHO05D004977 4.2e-25 117.9 90 61.1
Dinv20162 Davidia involucrata HOM05D004205 ORTHO05D004977 4.2e-25 117.9 90 61.1
Gohir.A01G065100 Gossypium hirsutum HOM05D004205 ORTHO05D004977 3.6e-24 114.8 90 61.1
Gorai.002G072300 Gossypium raimondii HOM05D004205 ORTHO05D004977 4.7e-24 114.4 90 62.2
Gohir.D01G052500 Gossypium hirsutum HOM05D004205 ORTHO05D004977 6.1e-24 114.0 90 61.1
Cpa.g.sc80.45 Carica papaya HOM05D004205 ORTHO05D004977 8.0e-24 113.6 91 61.5
Atru.chr2.2712 Acer truncatum HOM05D004205 ORTHO05D004977 1.0e-23 113.2 91 62.6
Thecc.07G080400 Theobroma cacao HOM05D004205 ORTHO05D004977 1.8e-23 112.5 91 59.3
COL.COLO4_09422 Corchorus olitorius HOM05D004205 ORTHO05D004977 3.0e-23 111.7 91 60.4
Duzib213G0975 Durio zibethinus HOM05D004205 ORTHO05D004977 3.0e-23 111.7 91 60.4
CSS0032517 Camellia sinensis var. sinensis HOM05D004205 ORTHO05D004977 5.2e-23 110.9 92 57.6
Rhsim06G0197000 Rhododendron simsii HOM05D004205 ORTHO05D004977 3.4e-22 108.2 90 54.4
vmacro11853 Vaccinium macrocarpon HOM05D004205 ORTHO05D004977 4.4e-22 107.8 90 54.4
RcHm_v2.0_Chr5g0034321 Rosa chinensis HOM05D004205 ORTHO05D004977 9.8e-22 106.7 90 57.8
Manes.03G112016 Manihot esculenta HOM05D004205 ORTHO05D004977 2.2e-21 105.5 90 57.8
Manes.03G112100 Manihot esculenta HOM05D004205 ORTHO05D004977 2.2e-21 105.5 90 57.8
Haze_09457 Corylus avellana HOM05D004205 ORTHO05D004977 6.3e-21 104.0 90 60.0
Potri.001G401900 Populus trichocarpa HOM05D004205 ORTHO05D004977 8.3e-21 103.6 90 56.7
Lalb_Chr25g0286491 Lupinus albus HOM05D004205 ORTHO05D004977 1.1e-20 103.2 92 60.9
Actinidia05372 Actinidia chinensis HOM05D004205 ORTHO05D004977 1.8e-20 102.4 90 53.3
Nn1g06581 Nelumbo nucifera HOM05D004205 ORTHO05D004977 1.8e-20 102.4 90 54.4
CiPaw.11G172400 Carya illinoinensis HOM05D004205 ORTHO05D004977 3.1e-20 101.7 90 56.7
Dinv40546 Davidia involucrata HOM05D000770 ORTHO05D000586 7.0e-20 100.5 90 55.6
FvH4_3g20430 Fragaria vesca HOM05D004205 ORTHO05D004977 7.0e-20 100.5 90 56.7
QL08p020409 Quercus lobata HOM05D004205 ORTHO05D004977 9.1e-20 100.1 90 54.4
MD00G1089400 Malus domestica HOM05D004205 ORTHO05D004977 1.2e-19 99.8 90 55.6
Cfa020556 Carpinus fangiana HOM05D004205 ORTHO05D004977 1.6e-19 99.4 90 56.7
Oeu019333.1 Olea europaea HOM05D004205 ORTHO05D004977 2.0e-19 99.0 92 51.1
Oeu011680.1 Olea europaea HOM05D004205 ORTHO05D004977 2.7e-19 98.6 91 50.5
Lalb_Chr20g0109781 Lupinus albus HOM05D004205 ORTHO05D004977 3.5e-19 98.2 79 64.6
DCAR_013091 Daucus carota HOM05D004205 ORTHO05D004977 4.5e-19 97.8 85 57.6
Ciclev10014995m.g Citrus clementina HOM05D004205 ORTHO05D004977 5.9e-19 97.4 90 51.1
FAN11G0436 Fragaria x ananassa HOM05D004205 ORTHO05D004977 7.7e-19 97.1 90 54.4
Migut.M00850 Erythranthe guttata HOM05D004205 ORTHO05D004977 1.0e-18 96.7 89 50.6
Cc05_g12220 Coffea canephora HOM05D004205 ORTHO05D004977 1.3e-18 96.3 90 48.9
FAN16G1554 Fragaria x ananassa HOM05D004205 ORTHO05D004977 2.2e-18 95.5 83 55.4
Lj1C846T14 Lonicera japonica HOM05D004205 ORTHO05D004977 2.9e-18 95.1 87 51.7
TAR629G3452 Trochodendron aralioides HOM05D004205 ORTHO05D004977 3.8e-18 94.7 92 53.3
Cpa.g.sc27.49 Carica papaya HOM05D004205 ORTHO05D004977 5.0e-18 94.4 90 48.9
GSVIVG01002063001 Vitis vinifera HOM05D004205 ORTHO05D004977 6.5e-18 94.0 91 52.7
Atru.chr10.1899 Acer truncatum HOM05D004205 ORTHO05D004977 8.5e-18 93.6 90 50.0
ClCG01G022910 Citrullus lanatus HOM05D004205 ORTHO05D004977 2.5e-17 92.0 85 50.6
AUR62014806 Chenopodium quinoa HOM05D004205 ORTHO05D004977 4.2e-17 91.3 90 48.9
Duzib235G1315 Durio zibethinus HOM05D004205 ORTHO05D004977 5.5e-17 90.9 90 48.9
CsaV3_6G050080 Cucumis sativus L. HOM05D004205 ORTHO05D004977 7.2e-17 90.5 89 48.3
Nitab4.5_0001551g0010 Nicotiana tabacum HOM05D004205 ORTHO05D004977 7.2e-17 90.5 90 51.1
EL10Ac4g08142 Beta vulgaris HOM05D004205 ORTHO05D004977 9.5e-17 90.1 90 46.7
AUR62016996 Chenopodium quinoa HOM05D004205 ORTHO05D004977 9.5e-17 90.1 90 48.9
Haze_06483 Corylus avellana HOM05D004205 ORTHO05D004977 9.5e-17 90.1 83 50.6
Lsat_1_v5_gn_5_127800 Lactuca sativa HOM05D004205 ORTHO05D004977 9.5e-17 90.1 87 43.7
THA.LOC104818068 Tarenaya hassleriana HOM05D004205 ORTHO05D004977 9.5e-17 90.1 90 52.2
TWI39G0425 Tripterygium wilfordii HOM05D004205 ORTHO05D004977 9.5e-17 90.1 91 50.5
Sc23g0004850 Simmondsia chinensis HOM05D004205 ORTHO05D004977 1.2e-16 89.7 90 46.7
arahy.Tifrunner.gnm1.ann1.XKDE21 Arachis hypogaea HOM05D000190 ORTHO05D000113 1.6e-16 89.4 90 51.1
MELO3C007288.2 Cucumis melo HOM05D004205 ORTHO05D004977 1.6e-16 89.4 90 46.7
Solyc07g063240.4 Solanum lycopersicum HOM05D004205 ORTHO05D004977 1.6e-16 89.4 90 47.8
Sopen07g031430 Solanum pennellii HOM05D004205 ORTHO05D004977 1.6e-16 89.4 90 47.8
CiPaw.09G058700 Carya illinoinensis HOM05D004205 ORTHO05D004977 2.1e-16 89.0 90 48.9
AUR62029371 Chenopodium quinoa HOM05D004205 ORTHO05D004977 2.1e-16 89.0 88 50.0
Peaxi162Scf00069g01334 Petunia axillaris HOM05D004205 ORTHO05D004977 2.1e-16 89.0 90 50.0
Nitab4.5_0003688g0010 Nicotiana tabacum HOM05D004205 ORTHO05D004977 3.6e-16 88.2 90 50.0
ECA234G4621 Erigeron canadensis HOM05D004205 ORTHO05D004977 4.7e-16 87.8 78 50.0
HanXRQChr12g0361531 Helianthus annuus HOM05D004205 ORTHO05D004977 6.1e-16 87.4 79 49.4
PGR004G2376 Punica granatum HOM05D004205 ORTHO05D004977 6.1e-16 87.4 90 46.7
SGA_v2.0_scaffold73G24288 Striga asiatica HOM05D004205 ORTHO05D004977 8.0e-16 87.0 98 42.9
Thhalv10020594m.g Eutrema salsugineum HOM05D004205 ORTHO05D004977 1.0e-15 86.7 82 51.2
MBI17_g30523_MAGBIO Magnolia biondii HOM05D004205 ORTHO05D004977 1.0e-15 86.7 88 50.0
QL05p039984 Quercus lobata HOM05D004205 ORTHO05D004977 1.0e-15 86.7 88 47.7
Manes.17G044200 Manihot esculenta HOM05D004205 ORTHO05D004977 1.8e-15 85.9 87 47.1
Eucgr.E03316 Eucalyptus grandis HOM05D004205 ORTHO05D004977 2.3e-15 85.5 91 45.1
Gohir.D10G025800 Gossypium hirsutum HOM05D004205 ORTHO05D004977 3.0e-15 85.1 90 45.6
Gorai.011G027100 Gossypium raimondii HOM05D004205 ORTHO05D004977 3.0e-15 85.1 90 45.6
Sp3g13640 Schrenkiella parvula HOM05D004205 ORTHO05D004977 3.0e-15 85.1 82 50.0
arahy.Tifrunner.gnm1.ann1.7PU9A6 Arachis hypogaea HOM05D004205 ORTHO05D004977 4.0e-15 84.7 90 47.8
Sabra04G0026200 Salix brachista HOM05D004205 ORTHO05D004977 5.2e-15 84.3 90 46.7
Lalb_Chr20g0121931 Lupinus albus HOM05D004205 ORTHO05D004977 6.8e-15 84.0 87 48.3
Gohir.A10G025100 Gossypium hirsutum HOM05D004205 ORTHO05D004977 8.8e-15 83.6 90 44.4
FvH4_3g09380 Fragaria vesca HOM05D004205 ORTHO05D004977 1.2e-14 83.2 93 44.1
Gohir.A09G072300 Gossypium hirsutum HOM05D004205 ORTHO05D004977 1.2e-14 83.2 87 46.0
Gorai.006G087000 Gossypium raimondii HOM05D004205 ORTHO05D004977 1.2e-14 83.2 87 46.0
Thecc.06G189300 Theobroma cacao HOM05D004205 ORTHO05D004977 1.2e-14 83.2 90 43.3
Actinidia05622 Actinidia chinensis HOM05D004205 ORTHO05D004977 1.5e-14 82.8 90 47.8
FAN14G3790 Fragaria x ananassa HOM05D004205 ORTHO05D004977 2.6e-14 82.0 91 42.9
MSTRG.6841 Avicennia marina HOM05D004205 ORTHO05D004977 3.4e-14 81.6 89 44.9
A05p34010 Brassica napus HOM05D004205 ORTHO05D004977 3.4e-14 81.6 82 48.8
BraA05t22223Z Brassica rapa HOM05D004205 ORTHO05D004977 3.4e-14 81.6 82 48.8
AUR62034269 Chenopodium quinoa HOM05D004205 ORTHO05D004977 4.4e-14 81.3 88 46.6
FAN16G2123 Fragaria x ananassa HOM05D004205 ORTHO05D004977 4.4e-14 81.3 93 43.0
FAN21G3767 Fragaria x ananassa HOM05D004205 ORTHO05D004977 4.4e-14 81.3 93 44.1
FAN05G1067 Fragaria x ananassa HOM05D004205 ORTHO05D004977 5.7e-14 80.9 91 41.8
FAN05G3867 Fragaria x ananassa HOM05D004205 ORTHO05D004977 5.7e-14 80.9 91 41.8
Ah.06g183970 Amaranthus hybridus HOM05D004205 ORTHO05D004977 7.5e-14 80.5 82 45.1
FAN11G3868 Fragaria x ananassa HOM05D004205 ORTHO05D004977 7.5e-14 80.5 93 44.1
Eucgr.D00630 Eucalyptus grandis HOM05D004205 ORTHO05D004977 1.3e-13 79.7 89 46.1
EL10Ac8g20368 Beta vulgaris HOM05D004205 ORTHO05D004977 2.2e-13 79.0 90 44.4
BcaC09g48505 Brassica carinata HOM05D004205 ORTHO05D004977 2.2e-13 79.0 83 45.8
C01p49060 Brassica napus HOM05D004205 ORTHO05D004977 2.2e-13 79.0 83 45.8
C05p51780 Brassica napus HOM05D004205 ORTHO05D004977 2.2e-13 79.0 82 47.6
BolC1t04869H Brassica oleracea HOM05D004205 ORTHO05D004977 2.2e-13 79.0 83 45.8
BolC5t33864H Brassica oleracea HOM05D004205 ORTHO05D004977 2.2e-13 79.0 82 47.6
Potri.011G051300 Populus trichocarpa HOM05D004205 ORTHO05D004977 2.2e-13 79.0 90 45.6
RcHm_v2.0_Chr5g0008211 Rosa chinensis HOM05D004205 ORTHO05D004977 3.7e-13 78.2 91 44.0
Potri.004G042100 Populus trichocarpa HOM05D004205 ORTHO05D004977 4.9e-13 77.8 95 47.4
A01p38730 Brassica napus HOM05D004205 ORTHO05D004977 6.3e-13 77.4 83 44.6
BraA01t03912Z Brassica rapa HOM05D004205 ORTHO05D004977 6.3e-13 77.4 83 44.6
BcaB06g29570 Brassica carinata HOM05D004205 ORTHO05D004977 8.3e-13 77.0 82 47.6
Hund22934 Selenicereus undatus HOM05D004205 ORTHO05D004977 1.1e-12 76.6 81 43.2
arahy.Tifrunner.gnm1.ann1.R761X6 Arachis hypogaea HOM05D004205 ORTHO05D004977 1.4e-12 76.3 89 40.4
CARHR090430 Cardamine hirsuta HOM05D004205 ORTHO05D004977 2.4e-12 75.5 82 47.6
BcaB04g20928 Brassica carinata HOM05D004205 ORTHO05D004977 4.1e-12 74.7 84 46.4
CAN.G162.69 Capsicum annuum HOM05D004205 ORTHO05D004977 4.1e-12 74.7 83 43.4
Medtr2g013430 Medicago truncatula HOM05D004205 ORTHO05D004977 7.0e-12 73.9 89 40.4
PGSC0003DMG400012450 Solanum tuberosum HOM05D004205 ORTHO05D004977 9.2e-12 73.6 120 33.3
AL230U10030 Arabidopsis lyrata HOM05D004205 ORTHO05D004977 1.2e-11 73.2 82 47.6
AL3G27930 Arabidopsis lyrata HOM05D004205 ORTHO05D004977 1.2e-11 73.2 82 47.6
Carub.0003s1511 Capsella rubella HOM05D004205 ORTHO05D004977 1.6e-11 72.8 82 47.6
Aa31LG8G2620 Aethionema arabicum HOM05D004205 ORTHO05D004977 2.0e-11 72.4 90 45.6
Lj6g0013418 Lotus japonicus HOM05D004205 ORTHO05D004977 2.7e-11 72.0 90 41.1
Prupe.4G045500 Prunus persica HOM05D004205 ORTHO05D004977 2.7e-11 72.0 91 40.7
TWI38G1735 Tripterygium wilfordii HOM05D004205 ORTHO05D004977 2.7e-11 72.0 91 45.1
CDE02G4208 Ceratophyllum demersum HOM05D004205 ORTHO05D004977 3.5e-11 71.6 89 48.3
FAN02G1210 Fragaria x ananassa HOM05D004205 ORTHO05D004977 3.5e-11 71.6 91 39.6
ATR0680G131 Amborella trichopoda HOM05D004205 ORTHO05D004977 7.8e-11 70.5 87 39.1
AT3G15390 Arabidopsis thaliana HOM05D004205 ORTHO05D004977 7.8e-11 70.5 90 43.3
Glyma.13G240200 Glycine max HOM05D004205 ORTHO05D004977 7.8e-11 70.5 90 41.1
CANSAT35G2051 Cannabis sativa HOM05D004205 ORTHO05D004977 1.0e-10 70.1 92 43.5
MD00G1095600 Malus domestica HOM05D004205 ORTHO05D004977 1.0e-10 70.1 83 42.2
MD05G1314000 Malus domestica HOM05D004205 ORTHO05D004977 1.3e-10 69.7 93 39.8
TPR.G29053 Trifolium pratense HOM05D004205 ORTHO05D004977 1.3e-10 69.7 89 37.1
Dinv04315 Davidia involucrata HOM05D004205 ORTHO05D004977 2.3e-10 68.9 51 60.8
VMungo0540G0305 Vigna mungo HOM05D004205 ORTHO05D004977 5.0e-10 67.8 90 40.0
PSO675G2835 Papaver somniferum HOM05D004205 ORTHO05D004977 1.9e-09 65.9 80 43.8
Phvul.006G186500 Phaseolus vulgaris HOM05D004205 ORTHO05D004977 2.5e-09 65.5 89 40.4
Aqoxy1G02498 Aquilegia oxysepala HOM05D004205 ORTHO05D004977 5.6e-09 64.3 90 37.8
unitig_746.g26697 Utricularia gibba HOM05D004205 ORTHO05D004977 7.3e-09 63.9 78 37.2
Sabra11G0035300 Salix brachista HOM05D004205 ORTHO05D004977 8.0e-08 60.5 146 28.1
Rhsim13G0177000 Rhododendron simsii HOM05D001170 ORTHO05D006602 3.0e-07 58.5 54 50.0
SEGI_19872 Sequoiadendron giganteum HOM05D005281 ORTHO05D006351 3.0e-07 58.5 87 33.3
Cfa000433 Carpinus fangiana HOM05D001170 ORTHO05D006602 6.8e-07 57.4 52 50.0
HPP92_005017 Vanilla planifolia HOM05D004205 ORTHO05D004977 6.8e-07 57.4 74 41.9
Hma1.2p1_0174F.1_g076760 Hydrangea macrophylla HOM05D004205 ORTHO05D004977 1.2e-06 56.6 54 53.7
Os02g0639700 Oryza sativa ssp. japonica HOM05D004205 ORTHO05D004977 1.2e-06 56.6 79 36.7


User provided reference genes

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