Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 0.0e+00 1151.0 628 100.0
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 3.4e-182 642.5 567 63.8
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 2.1e-171 606.7 582 60.3
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 2.1e-171 606.7 566 61.3
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.1e-169 600.9 576 60.6
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 5.8e-166 588.6 577 60.8
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 3.7e-165 585.9 577 60.1
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 2.7e-163 579.7 569 58.9
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.9e-162 575.9 570 58.4
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.2e-160 570.9 568 58.8
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.1e-160 570.1 573 57.6
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 2.8e-160 569.7 543 59.7
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 3.6e-160 569.3 564 58.7
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 6.2e-160 568.5 571 55.5
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 4.4e-158 562.4 566 57.4
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 4.4e-158 562.4 543 58.7
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 2.4e-156 556.6 586 55.6
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.2e-155 554.3 569 53.8
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 1.6e-155 553.9 580 56.7
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 2.7e-155 553.1 576 57.3
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 2.3e-154 550.1 579 53.9
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 5.1e-154 548.9 543 58.7
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.2e-152 544.3 581 55.6
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.0e-150 537.0 547 57.2
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 4.4e-150 535.8 538 56.5
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 5.8e-150 535.4 579 53.9
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.3e-149 534.3 544 57.9
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.7e-149 533.9 549 57.7
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.9e-149 533.1 566 53.7
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 3.8e-149 532.7 549 57.9
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 4.9e-149 532.3 575 57.6
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 1.9e-148 530.4 570 57.9
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 4.2e-148 529.3 575 54.1
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 5.4e-148 528.9 578 55.7
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 1.2e-147 527.7 580 51.9
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.1e-147 526.9 549 53.0
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 2.7e-147 526.6 570 56.1
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 6.0e-147 525.4 577 53.7
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 6.6e-146 521.9 588 52.9
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 7.3e-145 518.5 579 52.5
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.3e-144 517.7 619 51.1
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.4e-143 513.5 578 53.3
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 4.0e-143 512.7 578 53.1
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 7.6e-142 508.4 577 52.5
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 6.4e-141 505.4 540 55.9
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 9.3e-140 501.5 582 54.0
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 3.5e-139 499.6 570 54.2
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 5.1e-138 495.7 502 56.0
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 1.6e-136 490.7 571 54.6
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 2.1e-136 490.3 563 52.9
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 5.3e-135 485.7 593 50.1
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.4e-134 483.0 589 49.1
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 4.5e-134 482.6 589 49.2
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.7e-133 480.7 491 54.0
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 1.7e-133 480.7 569 51.1
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 2.2e-133 480.3 537 49.7
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 1.9e-132 477.2 538 50.4
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 2.3e-130 470.3 565 52.6
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 1.5e-129 467.6 603 49.9
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 1.3e-128 464.5 567 48.1
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 3.7e-128 463.0 573 52.5
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 4.8e-128 462.6 587 49.9
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 8.2e-128 461.8 605 47.6
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.4e-127 460.3 456 54.6
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.1e-127 459.9 566 49.3
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 3.1e-127 459.9 592 49.5
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 4.0e-127 459.5 564 51.2
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 5.3e-127 459.1 558 46.4
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 6.9e-127 458.8 589 49.6
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 1.5e-126 457.6 554 47.3
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 2.6e-126 456.8 572 46.0
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 4.5e-126 456.1 605 47.9
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 7.6e-126 455.3 560 48.2
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 1.0e-125 454.9 560 48.2
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 1.0e-125 454.9 560 48.4
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 1.7e-125 454.1 560 49.1
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 4.9e-125 452.6 562 47.7
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 6.5e-125 452.2 585 49.1
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.1e-124 451.4 559 49.9
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 1.4e-124 451.1 600 45.3
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.4e-124 451.1 554 49.1
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 2.5e-124 450.3 576 51.2
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 5.5e-124 449.1 558 46.6
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 1.2e-123 448.0 566 50.7
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 1.6e-123 447.6 566 47.2
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 4.6e-123 446.0 562 47.9
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 6.0e-123 445.7 589 49.7
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 1.3e-120 438.0 579 49.9
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 3.4e-118 429.9 610 45.1
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 6.5e-117 425.6 558 45.2
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 8.5e-117 425.2 577 47.5
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 1.9e-116 424.1 582 45.2
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 1.0e-114 418.3 588 46.9
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.3e-114 417.2 582 46.6
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.3e-112 411.4 604 46.4
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 3.7e-112 409.8 531 53.1
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 1.8e-111 407.5 580 47.4
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.7e-109 401.0 312 64.1
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 1.6e-107 394.4 398 58.3
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 9.7e-105 385.2 577 41.9
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 5.3e-103 379.4 567 42.9
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 1.9e-100 370.9 605 39.8
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 2.7e-99 367.1 595 44.0
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 4.7e-99 366.3 578 46.2
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.8e-95 354.4 500 43.2
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 1.6e-94 351.3 581 39.9
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 5.0e-93 346.3 557 40.0
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 2.5e-92 344.0 562 40.4
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.1e-91 340.9 482 43.4
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 3.0e-90 337.0 723 36.5
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 4.5e-86 323.2 572 40.6
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 1.7e-85 321.2 583 39.3
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 5.5e-84 316.2 653 39.5
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 3.6e-83 313.5 557 39.3
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 9.8e-73 278.9 545 36.3
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 1.7e-69 268.1 463 39.5
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.7e-69 268.1 563 34.1
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 8.9e-66 255.8 659 34.7
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 7.5e-65 252.7 271 48.3
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 2.9e-64 250.8 210 58.6
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 5.8e-57 226.5 697 29.3
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.9e-56 224.2 292 41.8
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 2.4e-55 221.1 498 36.9
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 4.6e-54 216.9 437 41.2
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 3.3e-52 210.7 674 29.4
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 6.8e-50 203.0 540 30.0
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 5.6e-44 183.3 186 48.9
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 9.3e-39 166.0 557 28.4
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 2.3e-37 161.4 291 33.3
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 1.3e-35 155.6 168 57.7
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 4.8e-35 153.7 490 26.1
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 3.4e-33 147.5 143 51.7
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 1.3e-32 145.6 276 33.0
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 7.1e-31 139.8 134 56.0
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 7.9e-30 136.3 178 52.8
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 2.9e-24 117.9 305 29.2
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 5.4e-23 113.6 81 64.2
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.4e-23 113.6 81 64.2
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 7.4e-20 103.2 164 37.2
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 4.3e-12 77.4 117 42.7
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 7.6e-09 66.6 73 43.8
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 2.9e-08 64.7 110 33.6


User provided reference genes

Program Settings