Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 7.0e-40 166.8 81 100.0
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 4.1e-32 141.0 94 78.7
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 4.1e-32 141.0 94 78.7
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 4.1e-32 141.0 94 78.7
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 4.1e-32 141.0 94 78.7
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 4.1e-32 141.0 94 78.7
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 4.1e-32 141.0 94 78.7
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 4.1e-32 141.0 94 78.7
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 4.1e-32 141.0 94 78.7
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 4.1e-32 141.0 94 78.7
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 5.4e-32 140.6 94 77.7
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 1.2e-31 139.4 94 77.7
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.6e-31 139.0 94 77.7
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.6e-31 139.0 94 77.7
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 1.6e-31 139.0 94 77.7
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 3.5e-31 137.9 94 77.7
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 3.5e-31 137.9 94 77.7
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 3.5e-31 137.9 94 76.6
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 4.5e-31 137.5 94 76.6
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 4.5e-31 137.5 94 76.6
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 4.5e-31 137.5 94 76.6
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 4.5e-31 137.5 93 77.4
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 5.9e-31 137.1 94 76.6
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 7.8e-31 136.7 94 76.6
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 7.8e-31 136.7 94 76.6
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-30 136.3 94 76.6
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 6.6e-30 133.7 94 75.5
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 6.6e-30 133.7 94 75.5
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.1e-29 132.9 94 74.5
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.1e-29 132.9 94 74.5
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 1.1e-29 132.9 94 74.5
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 1.1e-29 132.9 94 74.5
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 1.1e-29 132.9 94 74.5
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 1.1e-29 132.9 94 74.5
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 1.9e-29 132.1 94 75.5
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 2.5e-29 131.7 94 75.5
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 2.5e-29 131.7 94 75.5
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.3e-29 131.3 94 75.5
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 3.3e-29 131.3 94 75.5
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 3.3e-29 131.3 94 75.5
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 4.3e-29 131.0 94 73.4
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.3e-29 131.0 94 74.5
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.3e-29 131.0 94 73.4
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.2e-28 129.4 94 73.4
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 2.8e-28 128.3 94 71.3
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.6e-28 127.9 94 72.3
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 6.1e-28 127.1 94 73.4
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 6.1e-28 127.1 94 72.3
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 6.1e-28 127.1 94 72.3
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 6.1e-28 127.1 94 72.3
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 6.1e-28 127.1 94 72.3
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 6.1e-28 127.1 92 70.7
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.0e-27 126.3 94 72.3
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 1.0e-27 126.3 94 72.3
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.3e-27 125.2 94 71.3
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.0e-27 124.8 94 71.3
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 3.0e-27 124.8 94 71.3
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 4.0e-27 124.4 94 70.2
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.4e-26 120.9 94 71.3
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 5.7e-26 120.6 82 76.8
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-25 119.4 83 74.7
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 2.9e-25 118.2 94 70.2
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 8.3e-25 116.7 82 74.4
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.1e-24 116.3 88 72.7
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 1.8e-24 115.5 81 75.3
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 2.4e-24 115.2 83 72.3
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 7.0e-24 113.6 94 67.0
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 2.7e-23 111.7 94 67.0
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 3.5e-23 111.3 82 68.3
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 5.9e-23 110.5 94 62.8
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 7.8e-23 110.2 81 72.8
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.0e-22 109.8 62 88.7
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.0e-22 108.2 81 70.4
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 5.0e-22 107.5 84 67.9
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 6.6e-22 107.1 84 66.7
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.5e-21 105.1 81 70.4
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 2.8e-20 101.7 73 72.6
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 8.0e-20 100.1 72 72.2
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.1e-19 99.8 77 68.8
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 1.1e-19 99.8 56 87.5
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-19 99.8 56 87.5
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-19 99.8 56 87.5
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.1e-19 99.8 56 87.5
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 1.8e-19 99.0 79 65.8
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 2.3e-19 98.6 94 59.6
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.0e-19 97.8 79 64.6
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 5.2e-19 97.4 86 61.6
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 6.8e-19 97.1 56 85.7
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 6.8e-19 97.1 56 85.7
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 6.8e-19 97.1 94 59.6
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.7e-17 92.4 73 67.1
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 6.4e-17 90.5 72 66.7
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 6.4e-17 90.5 56 80.4
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.4e-16 89.4 53 77.4
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 1.4e-16 89.4 56 80.4
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.0e-14 83.2 63 71.4
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 1.7e-14 82.4 71 59.2
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 3.0e-14 81.6 61 70.5
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 3.9e-14 81.3 63 68.3
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 3.9e-14 81.3 88 58.0
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 5.0e-14 80.9 44 86.4
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 6.6e-14 80.5 46 84.8
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 2.5e-13 78.6 44 84.1
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 5.6e-13 77.4 65 63.1
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 4.7e-12 74.3 43 81.4
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.8e-11 72.4 59 66.1
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 8.9e-11 70.1 57 68.4
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 1.5e-10 69.3 46 76.1
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 5.8e-10 67.4 41 80.5
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.1e-08 63.2 37 81.1
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 3.2e-08 61.6 32 87.5
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 3.2e-08 61.6 55 60.0
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 4.1e-08 61.2 50 64.0
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 7.1e-08 60.5 48 68.8
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 1.6e-07 59.3 46 69.6
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 6.0e-07 57.4 30 86.7
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 6.0e-07 57.4 27 96.3
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 6.0e-07 57.4 51 60.8
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 1.0e-06 56.6 44 70.5
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 1.3e-06 56.2 27 96.3
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.3e-06 56.2 32 81.2
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 3.9e-06 54.7 61 54.1


User provided reference genes

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