Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 3.3e-109 398.3 189 100.0
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 2.6e-93 345.5 190 84.2
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 5.2e-86 321.2 189 77.8
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 2.6e-85 318.9 189 76.2
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 4.4e-85 318.2 189 77.2
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 2.8e-84 315.5 189 78.8
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 4.8e-84 314.7 190 77.4
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 6.3e-84 314.3 189 75.7
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 6.3e-84 314.3 189 75.7
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 8.3e-84 313.9 190 77.4
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.4e-83 312.4 189 75.1
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 7.0e-83 310.8 190 76.3
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 2.0e-82 309.3 190 75.8
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 5.9e-82 307.8 189 75.1
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 1.0e-81 307.0 190 76.3
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 1.0e-81 307.0 188 75.5
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 1.3e-81 306.6 188 76.1
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 1.7e-81 306.2 190 75.3
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 3.8e-81 305.1 191 75.4
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 3.8e-81 305.1 186 76.3
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 6.6e-81 304.3 191 75.4
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 8.6e-81 303.9 189 76.2
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 8.6e-81 303.9 188 75.5
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.1e-80 303.5 185 74.6
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 1.5e-80 303.1 186 74.7
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 3.3e-80 302.0 188 72.9
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 7.2e-80 300.8 185 74.6
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 3.6e-79 298.5 189 70.9
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 4.7e-79 298.1 185 72.4
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 6.1e-79 297.7 185 75.1
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 2.3e-78 295.8 205 69.3
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 2.3e-78 295.8 189 73.0
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 3.0e-78 295.4 190 73.2
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 5.2e-78 294.7 190 72.1
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 5.2e-78 294.7 188 73.4
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 1.2e-77 293.5 187 73.8
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 1.2e-77 293.5 187 73.3
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 3.4e-77 292.0 189 72.0
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 5.7e-77 291.2 190 72.1
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 5.7e-77 291.2 187 70.6
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 5.7e-77 291.2 188 71.8
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 5.7e-77 291.2 187 72.7
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 7.5e-77 290.8 188 70.2
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 9.8e-77 290.4 221 65.2
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 1.7e-76 289.7 190 71.1
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 1.7e-76 289.7 190 70.0
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.7e-76 289.7 189 69.3
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.8e-76 288.9 187 69.5
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.8e-76 288.9 187 69.5
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 8.3e-76 287.3 191 71.7
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 8.3e-76 287.3 185 71.4
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 1.1e-75 287.0 188 71.8
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 1.1e-75 287.0 190 71.1
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 1.1e-75 287.0 190 69.5
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 1.4e-75 286.6 188 70.2
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 1.8e-75 286.2 190 71.1
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 2.4e-75 285.8 190 71.1
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 2.4e-75 285.8 190 71.6
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 2.4e-75 285.8 188 70.2
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 3.1e-75 285.4 186 71.0
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 3.1e-75 285.4 190 69.5
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 4.1e-75 285.0 188 69.7
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 4.1e-75 285.0 188 70.2
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 5.4e-75 284.6 187 71.1
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 1.2e-74 283.5 188 71.8
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 1.6e-74 283.1 187 71.1
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 2.0e-74 282.7 187 68.4
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.0e-74 282.7 187 68.4
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 2.7e-74 282.3 189 69.8
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 3.5e-74 282.0 190 70.0
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 5.9e-74 281.2 187 68.4
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 7.8e-74 280.8 188 69.1
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 1.0e-73 280.4 187 71.1
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 1.7e-73 279.6 192 67.7
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 2.3e-73 279.3 188 69.7
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 2.9e-73 278.9 190 70.0
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 2.9e-73 278.9 189 70.4
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 1.1e-72 276.9 190 67.4
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 1.1e-72 276.9 190 67.4
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 1.1e-72 276.9 189 68.3
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 3.3e-72 275.4 189 68.8
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 4.3e-72 275.0 190 66.8
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 9.5e-72 273.9 185 67.6
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 1.2e-71 273.5 190 66.3
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 1.2e-71 273.5 190 66.3
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 2.8e-71 272.3 191 67.0
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 8.0e-71 270.8 188 69.7
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 2.3e-70 269.2 189 68.3
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 4.0e-70 268.5 182 67.0
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 6.8e-70 267.7 187 66.8
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 4.4e-69 265.0 190 67.9
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 3.7e-68 261.9 190 66.3
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 3.2e-67 258.8 227 56.8
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 4.1e-67 258.5 185 67.0
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 9.2e-67 257.3 189 64.6
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 3.0e-65 252.3 187 63.6
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 3.0e-65 252.3 183 66.7
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.1e-64 250.4 185 64.3
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.5e-64 250.0 185 63.2
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 1.9e-64 249.6 184 63.0
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 2.5e-64 249.2 144 78.5
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 3.3e-64 248.8 185 64.9
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 5.6e-64 248.1 184 63.0
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.6e-63 246.5 185 62.7
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 1.1e-62 243.8 187 63.6
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 1.1e-62 243.8 187 62.6
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.4e-61 238.8 185 62.2
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 9.8e-61 237.3 146 72.6
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 2.2e-60 236.1 186 61.8
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 8.3e-60 234.2 187 60.4
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 2.4e-59 232.6 187 58.8
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 1.2e-58 230.3 185 58.9
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 4.6e-58 228.4 188 61.2
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.3e-57 226.9 179 62.6
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.5e-56 223.4 131 74.8
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.6e-55 219.9 184 57.6
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 1.1e-54 217.2 186 58.6
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 1.4e-54 216.9 187 52.4
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 1.2e-50 203.8 185 53.0
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 3.5e-34 149.1 111 62.2
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.6e-31 140.2 109 59.6
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 4.0e-30 135.6 99 66.7
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 2.0e-29 133.3 82 75.6
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 3.8e-28 129.0 84 67.9
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 5.8e-21 105.1 115 48.7
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.4e-19 100.5 95 53.7
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 1.2e-10 70.9 78 48.7


User provided reference genes

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