Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 2.4e-116 422.2 208 100.0
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.6e-96 356.3 234 78.6
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.6e-72 276.6 238 59.2
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 2.7e-72 275.8 244 57.8
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.7e-69 265.4 238 57.6
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 8.3e-69 264.2 238 57.1
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-68 263.8 238 56.3
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 4.1e-68 261.9 232 56.0
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.2e-67 260.4 243 55.1
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 5.9e-67 258.1 232 56.0
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 7.7e-67 257.7 232 56.9
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.3e-66 256.9 233 54.9
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 1.7e-66 256.5 232 55.6
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.5e-65 253.4 238 55.0
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 2.5e-65 252.7 238 53.4
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 9.5e-65 250.8 238 55.0
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 6.1e-64 248.1 240 53.8
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 3.0e-63 245.7 238 52.1
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.5e-62 243.4 238 53.4
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 5.7e-62 241.5 240 53.8
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.7e-62 241.5 241 52.3
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 3.7e-61 238.8 240 53.8
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 2.0e-59 233.0 238 50.0
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 7.8e-59 231.1 238 49.6
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 2.3e-58 229.6 233 53.2
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 3.8e-58 228.8 238 51.7
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.1e-57 227.3 233 52.4
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 1.5e-57 226.9 233 52.8
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 1.6e-56 223.4 237 50.6
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 2.1e-56 223.0 242 48.3
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 8.0e-56 221.1 239 46.9
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.0e-55 220.7 240 47.9
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 4.4e-54 215.3 247 48.2
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.7e-53 213.4 233 48.5
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.7e-53 213.4 234 45.7
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.7e-53 213.4 232 46.1
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 4.9e-53 211.8 230 47.0
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 2.4e-52 209.5 232 49.6
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 3.2e-52 209.1 235 46.0
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 7.0e-52 208.0 232 49.1
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 1.6e-51 206.8 230 47.8
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 4.6e-51 205.3 237 46.4
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 7.8e-51 204.5 234 44.9
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 7.8e-51 204.5 234 47.4
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.3e-50 203.8 229 45.9
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 2.3e-50 203.0 231 47.6
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 2.3e-50 203.0 230 47.0
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.9e-50 202.2 242 44.2
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 5.0e-50 201.8 243 44.9
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 1.9e-49 199.9 240 43.8
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.9e-49 199.9 232 49.1
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.9e-49 199.9 232 49.1
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.3e-49 199.1 232 49.1
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.3e-49 198.7 234 45.7
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 4.3e-49 198.7 231 46.8
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.3e-49 198.7 239 47.7
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 4.3e-49 198.7 229 45.0
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 5.6e-49 198.4 233 44.6
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.6e-49 198.4 243 44.0
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.6e-49 198.4 232 48.7
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 7.3e-49 198.0 237 43.5
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 9.5e-49 197.6 229 47.2
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 9.5e-49 197.6 202 49.5
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.2e-48 197.2 243 44.4
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.2e-48 197.2 243 44.4
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.2e-48 197.2 232 46.6
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 4.7e-48 195.3 234 45.7
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 4.7e-48 195.3 239 46.0
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 8.0e-48 194.5 237 45.6
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.3e-47 193.0 240 44.6
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 3.1e-47 192.6 232 48.3
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 4.0e-47 192.2 230 45.7
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 1.2e-46 190.7 240 46.7
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.5e-46 190.3 232 47.8
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 2.6e-46 189.5 209 48.8
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 2.6e-46 189.5 230 47.4
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 3.4e-46 189.1 234 44.9
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 3.4e-46 189.1 236 44.5
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.3e-45 187.2 222 45.9
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.7e-45 186.8 232 47.4
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 1.7e-45 186.8 229 43.2
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 2.9e-45 186.0 238 42.0
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 6.4e-45 184.9 236 44.5
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.1e-44 184.1 229 43.2
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.2e-44 182.6 232 41.8
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 3.2e-44 182.6 237 45.1
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 4.6e-43 178.7 229 45.4
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.9e-42 175.6 233 42.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 5.1e-42 175.3 232 41.8
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.1e-41 174.1 236 41.5
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.1e-41 174.1 236 41.5
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.1e-41 174.1 227 44.5
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.1e-41 174.1 227 43.2
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.5e-41 173.7 236 41.1
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 1.9e-41 173.3 236 41.1
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 1.9e-41 173.3 236 41.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 1.9e-41 173.3 248 42.3
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 2.5e-41 172.9 233 43.3
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 3.3e-41 172.6 217 42.9
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 3.3e-41 172.6 231 41.6
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 4.3e-41 172.2 206 46.1
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.3e-41 171.4 226 45.6
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 2.8e-40 169.5 233 40.8
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 6.2e-40 168.3 236 40.7
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.1e-39 167.5 191 47.6
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 3.1e-39 166.0 234 41.9
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 5.2e-39 165.2 233 39.1
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 3.4e-38 162.5 229 38.9
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 4.4e-38 162.2 117 67.5
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 4.4e-38 162.2 228 43.0
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 7.5e-38 161.4 237 39.2
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 2.2e-37 159.8 234 39.7
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 2.9e-37 159.5 201 46.3
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 4.9e-37 158.7 233 38.6
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 6.4e-37 158.3 154 49.4
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 6.4e-37 158.3 201 43.3
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 6.4e-37 158.3 251 38.2
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.1e-36 157.5 201 43.8
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 1.1e-36 157.5 234 38.9
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 2.7e-35 152.9 231 39.4
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 7.8e-35 151.4 154 48.7
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.0e-34 151.0 234 38.0
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.0e-34 151.0 246 38.2
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 1.3e-34 150.6 236 39.0
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 2.3e-34 149.8 237 38.4
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.3e-34 149.8 232 37.9
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 3.9e-34 149.1 210 43.8
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 8.6e-34 147.9 234 37.6
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 8.6e-34 147.9 233 41.2
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.5e-33 147.1 232 39.2
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 5.6e-33 145.2 223 35.4
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.6e-32 143.7 230 38.7
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 4.7e-32 142.1 237 33.8
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 6.2e-32 141.7 232 39.2
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.1e-31 141.0 133 56.4
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.1e-31 141.0 128 57.8
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 4.0e-31 139.0 215 37.2
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.0e-31 139.0 204 44.1
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 2.0e-30 136.7 237 36.3
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 2.0e-30 136.7 237 36.3
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 9.9e-30 134.4 196 40.8
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.4e-28 130.6 235 32.8
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 2.4e-28 129.8 238 34.9
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 3.2e-28 129.4 151 43.7
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 4.2e-28 129.0 210 33.3
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 4.2e-28 129.0 225 34.2
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.2e-27 127.5 143 46.9
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 3.5e-27 125.9 229 32.8
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 6.0e-27 125.2 154 42.2
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 3.3e-25 119.4 140 52.1
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.1e-24 116.7 141 50.4
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 6.2e-24 115.2 133 46.6
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 8.1e-24 114.8 194 40.7
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 8.1e-24 114.8 178 38.2
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 2.4e-23 113.2 118 50.0
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 6.9e-23 111.7 166 36.1
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 9.0e-23 111.3 221 30.3
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.2e-21 106.7 147 42.2
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 8.4e-21 104.8 177 31.1
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 8.7e-18 94.7 141 38.3
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 4.8e-16 89.0 55 69.1
TAR636G2069 Trochodendron aralioides HOM05D003762 ORTHO05D004374 9.0e-15 84.7 69 59.4
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 4.5e-14 82.4 122 38.5
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 1.7e-13 80.5 94 45.7
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 2.2e-13 80.1 62 56.5
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 2.2e-13 80.1 139 33.8
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 4.2e-12 75.9 99 45.5
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 3.5e-11 72.8 120 30.0
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 6.0e-11 72.0 178 29.8
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.3e-10 70.9 53 54.7
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 8.7e-10 68.2 52 59.6
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-09 67.4 83 41.0
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.5e-09 67.4 68 48.5
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 5.6e-09 65.5 61 49.2
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 3.7e-08 62.8 40 60.0
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 4.8e-08 62.4 137 35.8


User provided reference genes

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