Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 5.5e-145 517.7 278 100.0
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 3.1e-127 458.8 266 91.0
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 2.6e-126 455.7 266 90.2
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 3.4e-126 455.3 269 90.7
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 5.8e-126 454.5 266 89.8
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 7.5e-126 454.1 266 89.8
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 9.8e-126 453.8 266 89.8
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 2.2e-125 452.6 265 89.8
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 3.7e-125 451.8 267 89.9
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 3.7e-125 451.8 266 89.5
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 8.3e-125 450.7 266 89.1
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 8.3e-125 450.7 266 89.8
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 8.3e-125 450.7 263 90.1
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 1.1e-124 450.3 266 89.1
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.4e-124 449.9 266 89.1
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 2.4e-124 449.1 264 89.0
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 2.4e-124 449.1 263 90.1
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 2.4e-124 449.1 266 88.7
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 3.2e-124 448.7 266 89.8
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 3.2e-124 448.7 274 88.7
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 3.2e-124 448.7 266 89.1
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 3.2e-124 448.7 268 90.3
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 3.2e-124 448.7 266 89.1
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 7.0e-124 447.6 267 90.3
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 7.0e-124 447.6 275 85.5
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.6e-123 446.4 263 89.7
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 2.1e-123 446.0 266 89.8
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.7e-123 445.7 267 88.8
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 2.7e-123 445.7 267 88.8
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 4.6e-123 444.9 266 89.1
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 4.6e-123 444.9 267 88.8
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 4.6e-123 444.9 275 85.8
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 1.3e-122 443.4 266 87.2
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 1.3e-122 443.4 266 88.0
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 2.3e-122 442.6 267 88.4
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 2.3e-122 442.6 266 87.6
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 1.1e-121 440.3 267 88.0
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 1.1e-121 440.3 293 81.9
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 1.1e-121 440.3 293 81.9
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 1.5e-121 439.9 273 89.0
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 1.5e-121 439.9 264 86.7
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 1.5e-121 439.9 264 86.7
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 1.9e-121 439.5 275 83.6
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 4.3e-121 438.3 267 88.8
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 4.3e-121 438.3 264 86.4
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 5.6e-121 438.0 268 86.9
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 1.6e-120 436.4 266 86.5
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.6e-120 436.4 267 86.5
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.6e-120 436.4 263 85.9
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 2.8e-120 435.6 265 89.1
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 4.7e-120 434.9 267 86.1
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 6.2e-120 434.5 265 86.8
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 1.1e-119 433.7 263 86.3
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 1.8e-119 433.0 265 87.9
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 2.3e-119 432.6 260 86.5
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 3.1e-119 432.2 270 85.9
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 3.1e-119 432.2 265 87.9
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 6.8e-119 431.0 268 86.2
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 8.9e-119 430.6 265 87.2
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 8.9e-119 430.6 265 87.2
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 2.0e-118 429.5 268 86.2
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 2.0e-118 429.5 267 86.9
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 2.6e-118 429.1 266 85.7
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 2.6e-118 429.1 265 87.2
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 3.4e-118 428.7 265 87.2
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 3.4e-118 428.7 262 87.4
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 5.8e-118 427.9 258 87.6
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 7.5e-118 427.6 258 88.0
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 9.9e-118 427.2 265 86.8
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 9.9e-118 427.2 265 86.8
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 1.1e-116 423.7 265 85.7
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.9e-116 422.9 295 79.7
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 5.4e-116 421.4 258 87.2
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 1.2e-115 420.2 269 82.2
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 1.6e-115 419.9 266 84.2
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 2.1e-115 419.5 274 81.8
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 1.0e-114 417.2 275 82.5
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 1.5e-113 413.3 259 82.6
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 9.5e-113 410.6 269 80.7
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.2e-112 410.2 259 82.2
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 4.7e-112 408.3 281 77.6
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 8.9e-111 404.1 288 79.5
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 3.4e-110 402.1 241 88.4
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 9.9e-110 400.6 259 83.0
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 3.0e-106 389.0 314 68.5
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 3.3e-105 385.6 233 88.4
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 2.0e-102 376.3 226 88.5
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 2.6e-102 375.9 255 82.4
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 9.9e-102 374.0 224 89.3
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 1.7e-101 373.2 238 83.6
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 2.2e-101 372.9 235 83.4
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 2.9e-101 372.5 260 77.3
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 4.9e-101 371.7 299 71.9
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 1.4e-100 370.2 299 71.6
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 2.4e-100 369.4 223 87.4
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 3.2e-100 369.0 263 76.0
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 6.0e-99 364.8 244 83.2
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 6.6e-98 361.3 257 75.5
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 5.6e-97 358.2 271 75.3
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 5.6e-97 358.2 233 84.1
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 4.0e-95 352.1 223 84.3
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 5.8e-94 348.2 253 73.9
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.0e-90 335.9 195 88.7
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 8.1e-88 327.8 243 75.3
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 5.3e-87 325.1 263 70.7
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 5.8e-86 321.6 239 72.8
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 7.6e-86 321.2 195 87.7
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 5.3e-79 298.5 281 58.7
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.2e-72 276.6 243 65.8
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 6.3e-72 275.0 244 67.6
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 7.2e-68 261.5 245 58.0
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 9.4e-68 261.2 256 58.6
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 2.9e-61 239.6 241 62.2
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 1.9e-60 236.9 281 50.2
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 3.6e-59 232.6 270 54.1
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 1.3e-56 224.2 230 61.7
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 9.4e-52 208.0 141 78.0
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.3e-48 197.6 140 80.0
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.1e-44 184.5 135 75.6
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 9.7e-41 171.4 98 90.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 2.0e-38 163.7 142 67.6
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 3.2e-36 156.4 204 53.4
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.4e-34 151.0 93 84.9
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.2e-32 143.7 159 55.3
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 6.3e-32 142.1 159 54.7
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 6.1e-27 125.6 90 76.7
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 5.6e-20 102.4 80 67.5
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 2.2e-16 90.5 96 56.2
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 4.1e-15 86.3 60 75.0
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 3.0e-13 80.1 225 32.9
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 1.8e-10 70.9 47 76.6
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 2.1e-06 57.4 41 75.6
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 4.6e-06 56.2 29 100.0


User provided reference genes

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