Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006337m.g Citrus clementina HOM05D006035 ORTHO05D007155 9.4e-43 176.4 86 100.0
Thecc.04G302600 Theobroma cacao HOM05D006035 ORTHO05D007155 3.2e-19 98.2 53 86.8
COL.COLO4_34598 Corchorus olitorius HOM05D006035 ORTHO05D007155 1.6e-18 95.9 53 84.9
Duzib212G0974 Durio zibethinus HOM05D006035 ORTHO05D007155 8.0e-18 93.6 53 84.9
Duzib151G0686 Durio zibethinus HOM05D006035 ORTHO05D007155 1.4e-17 92.8 53 83.0
MD13G1151300 Malus domestica HOM05D006035 ORTHO05D007155 2.3e-17 92.0 53 79.2
RcHm_v2.0_Chr4g0425671 Rosa chinensis HOM05D006035 ORTHO05D007155 3.0e-17 91.7 52 82.7
MD16G1152300 Malus domestica HOM05D006035 ORTHO05D007155 4.0e-17 91.3 53 77.4
Gohir.A10G173200 Gossypium hirsutum HOM05D006035 ORTHO05D007155 6.8e-17 90.5 53 84.9
Duzib052G0321 Durio zibethinus HOM05D006035 ORTHO05D007155 1.2e-16 89.7 53 83.0
QL06p012626 Quercus lobata HOM05D006035 ORTHO05D007155 2.0e-16 89.0 53 77.4
Ciclev10006076m.g Citrus clementina HOM05D006035 ORTHO05D007155 2.6e-16 88.6 53 81.1
Gohir.A09G234100 Gossypium hirsutum HOM05D006035 ORTHO05D007155 2.6e-16 88.6 48 85.4
Gohir.D09G234900 Gossypium hirsutum HOM05D006035 ORTHO05D007155 2.6e-16 88.6 48 85.4
Gorai.006G257800 Gossypium raimondii HOM05D006035 ORTHO05D007155 2.6e-16 88.6 48 85.4
Glyma.17G034900 Glycine max HOM05D006035 ORTHO05D007155 3.4e-16 88.2 53 75.5
TPR.G25406 Trifolium pratense HOM05D006035 ORTHO05D007155 3.4e-16 88.2 53 75.5
Gohir.D10G179700 Gossypium hirsutum HOM05D006035 ORTHO05D007155 4.4e-16 87.8 53 83.0
Lj6P692T31 Lonicera japonica HOM05D006035 ORTHO05D007155 7.5e-16 87.0 59 67.8
CARHR182020 Cardamine hirsuta HOM05D006035 ORTHO05D007155 9.8e-16 86.7 53 79.2
FvH4_4g19970 Fragaria vesca HOM05D006035 ORTHO05D007155 9.8e-16 86.7 52 76.9
Sp2g19800 Schrenkiella parvula HOM05D006035 ORTHO05D007155 9.8e-16 86.7 53 79.2
SpUn0021_0050 Schrenkiella parvula HOM05D006035 ORTHO05D007155 9.8e-16 86.7 53 79.2
Atru.chr4.3040 Acer truncatum HOM05D006035 ORTHO05D007155 1.3e-15 86.3 53 77.4
FAN07G1803 Fragaria x ananassa HOM05D006035 ORTHO05D007155 1.3e-15 86.3 52 76.9
Glyma.07G238700 Glycine max HOM05D006035 ORTHO05D007155 1.3e-15 86.3 53 75.5
Gorai.011G201000 Gossypium raimondii HOM05D006035 ORTHO05D007155 1.3e-15 86.3 53 79.2
MD04G1036600 Malus domestica HOM05D006035 ORTHO05D007155 1.3e-15 86.3 53 71.7
A09p04840 Brassica napus HOM05D006035 ORTHO05D007155 1.7e-15 85.9 53 79.2
Hma1.2p1_0013F.1_g008420 Hydrangea macrophylla HOM05D006035 ORTHO05D007155 1.7e-15 85.9 48 81.2
AT5G49480 Arabidopsis thaliana HOM05D006035 ORTHO05D007155 2.2e-15 85.5 53 77.4
PSO210G7669 Papaver somniferum HOM05D006035 ORTHO05D007155 2.2e-15 85.5 53 71.7
Sed0018605 Sechium edule HOM05D006035 ORTHO05D007155 2.2e-15 85.5 53 73.6
THA.LOC104818878 Tarenaya hassleriana HOM05D006035 ORTHO05D007155 2.2e-15 85.5 53 79.2
AL8G23240 Arabidopsis lyrata HOM05D006035 ORTHO05D007155 2.8e-15 85.1 53 77.4
Cfa015301 Carpinus fangiana HOM05D006035 ORTHO05D007155 2.8e-15 85.1 53 75.5
Haze_01313 Corylus avellana HOM05D006035 ORTHO05D007155 2.8e-15 85.1 53 75.5
BcaC04g23738 Brassica carinata HOM05D006035 ORTHO05D007155 3.7e-15 84.7 53 77.4
C09p05220 Brassica napus HOM05D006035 ORTHO05D007155 3.7e-15 84.7 53 77.4
BolC9t53448H Brassica oleracea HOM05D006035 ORTHO05D007155 3.7e-15 84.7 53 77.4
Medtr4g122260 Medicago truncatula HOM05D006035 ORTHO05D007155 3.7e-15 84.7 53 73.6
Psat0s4013g0040 Pisum sativum HOM05D006035 ORTHO05D007155 3.7e-15 84.7 63 63.5
Lalb_Chr13g0298531 Lupinus albus HOM05D006035 ORTHO05D007155 4.8e-15 84.3 53 73.6
PSO761G0247 Papaver somniferum HOM05D006035 ORTHO05D007155 4.8e-15 84.3 53 69.8
Aa31LG11G8120 Aethionema arabicum HOM05D006035 ORTHO05D007155 6.3e-15 84.0 53 71.7
VMungo1215G2980 Vigna mungo HOM05D006035 ORTHO05D007155 8.3e-15 83.6 53 73.6
BcaB04g19614 Brassica carinata HOM05D006035 ORTHO05D007155 1.4e-14 82.8 53 75.5
CsaV3_3G015240 Cucumis sativus L. HOM05D006035 ORTHO05D007155 1.4e-14 82.8 52 71.2
Lalb_Chr07g0182041 Lupinus albus HOM05D006035 ORTHO05D007155 1.4e-14 82.8 53 73.6
Oeu042670.1 Olea europaea HOM05D006035 ORTHO05D007155 1.4e-14 82.8 54 66.7
BraA09t36121Z Brassica rapa HOM05D006035 ORTHO05D007155 1.8e-14 82.4 53 75.5
MELO3C006721.2 Cucumis melo HOM05D006035 ORTHO05D007155 1.8e-14 82.4 52 71.2
CiPaw.01G137000 Carya illinoinensis HOM05D006035 ORTHO05D007155 2.4e-14 82.0 54 74.1
SGA_v2.0_scaffold64G22102 Striga asiatica HOM05D006035 ORTHO05D007155 2.4e-14 82.0 53 66.0
Ca_21435_v3 Cicer arietinum L. HOM05D006035 ORTHO05D007155 3.1e-14 81.6 63 60.3
Oeu038777.1 Olea europaea HOM05D006035 ORTHO05D007155 3.1e-14 81.6 63 58.7
CAN.G97.9 Capsicum annuum HOM05D006035 ORTHO05D007155 4.1e-14 81.3 57 64.9
Lj1g0017970 Lotus japonicus HOM05D006035 ORTHO05D007155 4.1e-14 81.3 53 73.6
PGR031G3428 Punica granatum HOM05D006035 ORTHO05D007155 4.1e-14 81.3 53 71.7
ClCG05G006630 Citrullus lanatus HOM05D006035 ORTHO05D007155 5.4e-14 80.9 52 69.2
Phvul.005G129600 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 5.4e-14 80.9 53 71.7
Oeu038775.1 Olea europaea HOM05D006035 ORTHO05D007155 1.2e-13 79.7 53 66.0
TAR633G1133 Trochodendron aralioides HOM05D006035 ORTHO05D007155 1.2e-13 79.7 52 71.2
CANSAT78G2193 Cannabis sativa HOM05D006035 ORTHO05D007155 1.6e-13 79.3 53 71.7
PGR004G1138 Punica granatum HOM05D006035 ORTHO05D007155 1.6e-13 79.3 63 58.7
Potri.008G103900 Populus trichocarpa HOM05D006035 ORTHO05D007155 2.0e-13 79.0 62 66.1
MSTRG.10157 Avicennia marina HOM05D006035 ORTHO05D007155 2.7e-13 78.6 59 61.0
Aqoxy2G02699 Aquilegia oxysepala HOM05D006035 ORTHO05D007155 3.5e-13 78.2 52 65.4
DCAR_030462 Daucus carota HOM05D006035 ORTHO05D007155 3.5e-13 78.2 59 62.7
Rhsim04G0240200 Rhododendron simsii HOM05D006035 ORTHO05D007155 3.5e-13 78.2 54 66.7
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 3.5e-13 78.2 73 54.8
Migut.G00072 Erythranthe guttata HOM05D006035 ORTHO05D007155 4.5e-13 77.8 53 64.2
Phvul.003G115800 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 4.5e-13 77.8 53 67.9
TWI53G1140 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 5.9e-13 77.4 59 62.7
CSS0043064 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 7.7e-13 77.0 59 59.3
Sabra10G0113300 Salix brachista HOM05D006035 ORTHO05D007155 7.7e-13 77.0 45 82.2
Nn3g21749 Nelumbo nucifera HOM05D006035 ORTHO05D007155 1.0e-12 76.6 52 65.4
Nitab4.5_0000655g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 1.0e-12 76.6 51 70.6
Nitab4.5_0000931g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 1.0e-12 76.6 51 70.6
EL10Ac3g05523 Beta vulgaris HOM05D006035 ORTHO05D007155 1.3e-12 76.3 59 64.4
CSS0012943 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.3e-12 76.3 58 62.1
CSS0047932 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.3e-12 76.3 58 62.1
Lsat_1_v5_gn_1_41620 Lactuca sativa HOM05D006035 ORTHO05D007155 1.3e-12 76.3 60 58.3
Manes.03G205900 Manihot esculenta HOM05D006035 ORTHO05D007155 1.7e-12 75.9 57 59.6
Eucgr.H04056 Eucalyptus grandis HOM05D006035 ORTHO05D007155 2.3e-12 75.5 53 69.8
TWI09G1568 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 2.3e-12 75.5 53 66.0
Potri.010G146900 Populus trichocarpa HOM05D006035 ORTHO05D007155 2.9e-12 75.1 53 73.6
Sopen01g024580 Solanum pennellii HOM05D006035 ORTHO05D007155 2.9e-12 75.1 57 61.4
PGSC0003DMG400001204 Solanum tuberosum HOM05D006035 ORTHO05D007155 2.9e-12 75.1 57 61.4
HanXRQChr11g0353881 Helianthus annuus HOM05D006035 ORTHO05D007155 3.8e-12 74.7 65 53.8
Dinv44276 Davidia involucrata HOM05D006035 ORTHO05D007155 5.0e-12 74.3 48 70.8
Rhsim02G0003100 Rhododendron simsii HOM05D006035 ORTHO05D007155 8.6e-12 73.6 54 64.8
Cc03_g00700 Coffea canephora HOM05D006035 ORTHO05D007155 1.5e-11 72.8 51 60.8
HanXRQChr05g0146001 Helianthus annuus HOM05D006035 ORTHO05D007155 1.5e-11 72.8 60 56.7
Actinidia31554 Actinidia chinensis HOM05D006035 ORTHO05D007155 1.9e-11 72.4 53 62.3
CSS0034436 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.9e-11 72.4 62 56.5
vmacro08029 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 1.9e-11 72.4 54 63.0
Sabra08G0078500 Salix brachista HOM05D006035 ORTHO05D007155 2.5e-11 72.0 56 66.1
vmacro15178 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 2.5e-11 72.0 54 59.3
ECA246G4755 Erigeron canadensis HOM05D006035 ORTHO05D007155 3.3e-11 71.6 59 59.3
Ah.13g071330 Amaranthus hybridus HOM05D006035 ORTHO05D007155 1.6e-10 69.3 61 57.4
AUR62039264 Chenopodium quinoa HOM05D006035 ORTHO05D007155 4.7e-10 67.8 64 51.6
Lsat_1_v5_gn_6_116540 Lactuca sativa HOM05D006035 ORTHO05D007155 4.7e-10 67.8 60 55.0
Sc19g0003080 Simmondsia chinensis HOM05D006035 ORTHO05D007155 6.1e-10 67.4 59 52.5
SalBow8G4845 Salvia bowleyana HOM05D006035 ORTHO05D007155 1.4e-09 66.2 53 54.7
Solyc01g058720.4 Solanum lycopersicum HOM05D006035 ORTHO05D007155 1.4e-09 66.2 44 68.2
unitig_32.g11850 Utricularia gibba HOM05D006035 ORTHO05D007155 2.3e-09 65.5 62 51.6
Peaxi162Scf00228g00041 Petunia axillaris HOM05D006035 ORTHO05D007155 4.0e-09 64.7 41 70.7
HPP92_008930 Vanilla planifolia HOM05D006035 ORTHO05D007155 6.8e-09 63.9 52 53.8
ATR0693G356 Amborella trichopoda HOM05D006035 ORTHO05D007155 1.5e-08 62.8 50 52.0
Lsat_1_v5_gn_6_116560 Lactuca sativa HOM05D006035 ORTHO05D007155 2.0e-08 62.4 60 48.3
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 5.7e-08 60.8 47 61.7
HPP92_005426 Vanilla planifolia HOM05D006035 ORTHO05D007155 5.7e-08 60.8 60 43.3
Zm00001eb395970 Zea mays HOM05D006035 ORTHO05D007155 5.7e-08 60.8 81 39.5
Oeu038773.1 Olea europaea HOM05D006035 ORTHO05D007155 6.3e-07 57.4 96 34.4
Oeu038774.1 Olea europaea HOM05D006035 ORTHO05D007155 6.3e-07 57.4 96 34.4
CSS0018156 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 4.1e-06 54.7 44 56.8


User provided reference genes

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