Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 3.8e-148 528.1 259 100.0
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 8.3e-119 430.6 261 81.6
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 1.4e-113 413.3 242 83.1
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 4.9e-111 404.8 260 77.7
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 7.0e-110 401.0 250 78.8
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 9.2e-110 400.6 273 74.7
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 1.2e-109 400.2 257 76.7
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 3.5e-109 398.7 257 76.7
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 3.5e-109 398.7 255 76.9
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 7.8e-109 397.5 246 78.0
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 1.7e-108 396.4 256 76.2
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 2.3e-108 396.0 263 74.9
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 2.3e-108 396.0 251 76.1
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 3.9e-108 395.2 256 75.8
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 5.1e-108 394.8 266 73.3
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 8.6e-108 394.0 260 74.6
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 1.1e-107 393.7 240 77.9
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 1.1e-107 393.7 251 75.3
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 1.5e-107 393.3 257 76.7
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 4.3e-107 391.7 264 73.1
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 9.5e-107 390.6 229 81.2
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 1.2e-106 390.2 263 73.8
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 1.6e-106 389.8 251 75.3
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 2.1e-106 389.4 266 72.9
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 4.7e-106 388.3 265 72.8
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 6.2e-106 387.9 268 72.0
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 6.2e-106 387.9 244 77.5
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 8.1e-106 387.5 257 74.3
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 1.8e-105 386.3 273 70.3
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 3.1e-105 385.6 266 73.7
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 3.1e-105 385.6 265 73.2
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 3.1e-105 385.6 265 73.2
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 3.1e-105 385.6 259 73.4
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 4.0e-105 385.2 265 73.2
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 4.0e-105 385.2 261 72.4
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 6.8e-105 384.4 264 74.2
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 8.9e-105 384.0 258 73.3
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 8.9e-105 384.0 259 73.4
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 1.5e-104 383.3 272 71.7
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 2.0e-104 382.9 273 70.3
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 5.8e-104 381.3 249 74.7
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 7.5e-104 380.9 274 69.7
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 9.9e-104 380.6 267 71.5
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 1.3e-103 380.2 255 76.1
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 2.9e-103 379.0 268 70.5
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 2.9e-103 379.0 268 70.5
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 3.7e-103 378.6 247 75.3
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 3.7e-103 378.6 247 75.3
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 3.7e-103 378.6 238 75.6
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 6.4e-103 377.9 256 73.4
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 8.3e-103 377.5 246 75.2
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 1.4e-102 376.7 259 72.2
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 2.4e-102 375.9 260 72.7
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 3.2e-102 375.6 251 74.5
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 4.1e-102 375.2 221 82.4
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 7.1e-102 374.4 255 72.2
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 9.2e-102 374.0 251 72.9
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 1.6e-101 373.2 247 76.5
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 2.1e-101 372.9 252 72.2
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 6.0e-101 371.3 227 78.9
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 3.9e-100 368.6 244 73.0
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 3.9e-100 368.6 251 71.7
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 6.6e-100 367.9 244 72.5
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 1.1e-99 367.1 245 72.7
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 1.5e-99 366.7 241 73.9
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 1.5e-99 366.7 252 72.6
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 1.9e-99 366.3 252 71.4
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 4.3e-99 365.2 254 70.1
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 4.3e-99 365.2 239 75.7
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 5.6e-99 364.8 259 69.5
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 5.6e-99 364.8 234 74.4
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 7.3e-99 364.4 252 70.2
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 9.5e-99 364.0 239 75.3
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 1.2e-98 363.6 244 72.1
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 1.2e-98 363.6 274 67.9
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 2.1e-98 362.8 233 74.7
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 6.2e-98 361.3 231 75.3
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 4.0e-97 358.6 207 81.2
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 5.2e-97 358.2 231 74.9
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 9.9e-96 354.0 240 71.2
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 9.9e-96 354.0 233 73.8
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 9.9e-96 354.0 229 74.2
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 1.9e-94 349.7 229 69.9
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 1.2e-93 347.1 240 68.3
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 3.9e-92 342.0 233 70.8
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 5.1e-92 341.7 246 68.7
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 1.1e-91 340.5 267 64.8
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 1.5e-91 340.1 301 59.5
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 4.3e-91 338.6 309 57.6
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 4.3e-91 338.6 213 75.1
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 5.6e-91 338.2 217 75.6
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 6.9e-89 331.3 248 67.3
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 6.9e-89 331.3 210 76.2
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 2.6e-88 329.3 212 75.5
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 4.9e-87 325.1 211 74.9
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 6.4e-87 324.7 208 74.5
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 8.4e-87 324.3 215 74.0
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 4.2e-86 322.0 218 71.1
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 3.5e-85 318.9 202 77.2
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 8.1e-82 307.8 198 78.3
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 2.2e-79 299.7 306 55.2
Atru.chr12.1174 Acer truncatum HOM05D005955 ORTHO05D007633 4.6e-77 292.0 174 82.8
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 1.1e-75 287.3 200 67.0
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 4.9e-71 271.9 226 61.9
Dinv09283 Davidia involucrata HOM05D005955 ORTHO05D007633 2.8e-66 256.1 167 77.8
AagrBONN_evm.TU.Sc2ySwM_344.4523 Anthoceros agrestis HOM05D005955 ORTHO05D007633 4.5e-64 248.8 230 53.0
SMO172G0212 Selaginella moellendorffii HOM05D005955 ORTHO05D007633 2.1e-61 240.0 253 49.4
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 6.0e-61 238.4 136 80.1
Pp3c5_2560 Physcomitrium patens HOM05D005955 ORTHO05D007633 3.0e-60 236.1 229 52.8
Ciclev10002701m.g Citrus clementina HOM05D005955 ORTHO05D007633 4.3e-59 232.3 174 69.5
BraA09t40201Z Brassica rapa HOM05D005955 ORTHO05D007633 2.7e-53 213.0 146 74.0
BolC8t50572H Brassica oleracea HOM05D005955 ORTHO05D007633 6.1e-53 211.8 146 74.0
CBR_g30624 Chara braunii HOM05D005955 ORTHO05D007633 1.0e-52 211.1 226 48.2
BolC8t50570H Brassica oleracea HOM05D005955 ORTHO05D007633 3.0e-52 209.5 146 73.3
Manes.08G167250 Manihot esculenta HOM05D005955 ORTHO05D007633 2.0e-51 206.8 133 76.7
AUR62037202 Chenopodium quinoa HOM05D005955 ORTHO05D007633 6.3e-50 201.8 137 72.3
CARHR164380 Cardamine hirsuta HOM05D005955 ORTHO05D007633 2.2e-42 176.8 123 73.2
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 5.3e-41 172.2 97 78.4
Manes.11G001251 Manihot esculenta HOM05D005955 ORTHO05D007633 1.2e-40 171.0 114 75.4
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 1.8e-36 157.1 96 78.1
C08p29620 Brassica napus HOM05D005955 ORTHO05D007633 3.1e-33 146.4 75 90.7
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 1.3e-31 141.0 95 72.6
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 4.4e-27 125.9 79 67.1
Migut.N01795 Erythranthe guttata HOM05D005955 ORTHO05D007633 2.7e-21 106.7 104 55.8
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 1.1e-17 94.7 47 83.0
BcaC08g45413 Brassica carinata HOM05D005955 ORTHO05D007633 4.5e-16 89.4 113 49.6
BcaB05g22681 Brassica carinata HOM05D005955 ORTHO05D007633 3.8e-15 86.3 113 48.7
PRCOL_00001745 Prasinoderma coloniale HOM05D005955 ORTHO05D007633 5.2e-12 75.9 180 28.9


User provided reference genes

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