Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 1.9e-156 555.8 289 100.0
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 4.0e-114 415.2 289 73.4
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 5.5e-103 378.3 289 66.8
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 3.5e-102 375.6 289 66.1
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 7.4e-100 367.9 289 63.3
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 1.8e-98 363.2 288 63.5
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 3.8e-96 355.5 289 61.9
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 6.0e-94 348.2 289 60.9
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 3.0e-93 345.9 289 60.6
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 3.7e-91 339.0 289 61.6
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 4.8e-91 338.6 290 59.3
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 5.3e-90 335.1 289 59.2
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 5.3e-90 335.1 293 60.8
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 4.5e-89 332.0 290 60.7
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 2.2e-88 329.7 292 61.3
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 9.4e-87 324.3 289 58.8
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 5.1e-85 318.5 253 63.2
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 5.1e-85 318.5 274 59.9
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 2.0e-84 316.6 297 59.3
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 4.3e-84 315.5 289 56.4
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 9.7e-84 314.3 289 56.7
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 1.3e-83 313.9 279 58.4
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 2.2e-83 313.2 289 56.1
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 2.8e-83 312.8 292 54.8
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 4.8e-83 312.0 289 55.7
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 8.2e-83 311.2 280 57.9
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 2.4e-82 309.7 291 57.4
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 3.1e-82 309.3 291 54.6
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 5.3e-82 308.5 297 54.5
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 1.2e-81 307.4 291 55.0
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 1.5e-81 307.0 290 57.6
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 1.5e-81 307.0 291 56.0
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 2.0e-81 306.6 289 54.3
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 2.6e-81 306.2 291 56.0
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 4.5e-81 305.4 290 55.2
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 4.5e-81 305.4 290 54.8
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 5.9e-81 305.1 277 57.0
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.7e-80 303.5 280 56.1
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 6.5e-80 301.6 290 54.1
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 6.5e-80 301.6 291 55.3
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 1.1e-79 300.8 291 57.4
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 1.4e-79 300.4 295 57.3
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 3.2e-79 299.3 262 59.9
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 4.2e-79 298.9 290 54.1
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 2.6e-76 289.7 290 55.5
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 2.6e-76 289.7 288 51.7
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 3.7e-75 285.8 288 52.1
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 4.8e-75 285.4 290 52.1
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 8.2e-75 284.6 288 51.4
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 2.4e-74 283.1 290 50.3
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 5.9e-73 278.5 224 62.1
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 9.4e-71 271.2 288 49.0
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 8.8e-69 264.6 242 57.0
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 8.2e-67 258.1 288 49.7
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 5.3e-66 255.4 401 38.9
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 4.5e-65 252.3 289 51.6
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 1.5e-63 247.3 227 55.1
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 2.8e-59 233.0 268 52.2
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 2.0e-57 226.9 182 59.9
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 5.5e-55 218.8 290 42.8
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 1.2e-44 184.5 157 58.0
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 2.0e-41 173.7 164 54.3
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 4.3e-39 166.0 186 46.8
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 1.6e-38 164.1 173 49.1
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 9.8e-36 154.8 137 54.7
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 9.8e-36 154.8 137 54.7
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 6.4e-35 152.1 171 46.8
Solyc09g090560.2 Solanum lycopersicum HOM05D008048 ORTHO05D010199 9.5e-31 138.3 159 50.3
FAN12G1007 Fragaria x ananassa HOM05D008048 ORTHO05D010199 5.8e-28 129.0 88 72.7
FAN12G3146 Fragaria x ananassa HOM05D008048 ORTHO05D010199 5.8e-28 129.0 88 72.7
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 1.7e-27 127.5 112 56.2
Mapoly0103s0043 Marchantia polymorpha HOM05D007245 ORTHO05D009049 3.6e-22 109.8 302 29.8
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 2.0e-20 104.0 94 58.5
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 2.9e-19 100.1 265 28.3
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 3.7e-19 99.8 290 29.7
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 4.9e-19 99.4 270 29.6
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.1e-18 98.2 270 29.6
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 2.4e-18 97.1 271 27.7
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 2.4e-18 97.1 249 30.1
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 4.1e-18 96.3 267 30.0
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 4.1e-18 96.3 269 29.4
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 5.4e-18 95.9 273 30.4
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 5.4e-18 95.9 266 28.6
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 7.1e-18 95.5 267 30.7
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 3.5e-17 93.2 268 28.7
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 7.8e-17 92.0 275 28.0
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 1.0e-16 91.7 281 28.1
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 1.7e-16 90.9 274 28.5
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 3.0e-16 90.1 246 29.7
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 3.0e-16 90.1 254 28.0
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 5.1e-16 89.4 269 29.7
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 5.1e-16 89.4 256 28.5
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 5.1e-16 89.4 255 28.2
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 5.1e-16 89.4 268 27.6
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 6.6e-16 89.0 282 26.6
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 8.6e-16 88.6 280 27.5
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 8.6e-16 88.6 278 27.7
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 1.1e-15 88.2 267 26.2
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 1.9e-15 87.4 272 28.3
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 1.9e-15 87.4 273 26.4
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 2.5e-15 87.0 248 29.0
TAR365G0106 Trochodendron aralioides HOM05D008048 ORTHO05D010199 4.3e-15 86.3 110 41.8
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 5.6e-15 85.9 279 28.0
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 9.6e-15 85.1 261 29.9
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 9.6e-15 85.1 273 26.7
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 1.6e-14 84.3 278 27.7
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 1.6e-14 84.3 258 26.4
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 2.1e-14 84.0 272 26.5
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 2.8e-14 83.6 268 27.6
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 2.8e-14 83.6 272 26.5
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 3.6e-14 83.2 272 28.7
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 4.7e-14 82.8 276 25.7
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 4.7e-14 82.8 279 27.2
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 4.7e-14 82.8 297 27.9
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 6.2e-14 82.4 278 27.3
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 6.2e-14 82.4 288 25.3
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 6.2e-14 82.4 279 28.0
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 8.1e-14 82.0 280 25.7
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 8.1e-14 82.0 267 27.0
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 1.1e-13 81.6 276 25.7
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.4e-13 81.3 274 27.4
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 1.4e-13 81.3 268 25.0
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 1.4e-13 81.3 273 28.6
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 2.4e-13 80.5 274 28.5
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 4.0e-13 79.7 275 25.5
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 5.2e-13 79.3 270 27.0
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 5.2e-13 79.3 116 37.9
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 5.2e-13 79.3 277 27.8
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 6.8e-13 79.0 293 25.6
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 6.8e-13 79.0 288 25.3
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 8.9e-13 78.6 273 25.6
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 1.2e-12 78.2 271 26.2
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 1.2e-12 78.2 273 25.6
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 1.2e-12 78.2 271 26.2
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 1.2e-12 78.2 271 26.2
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 1.5e-12 77.8 272 27.2
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.5e-12 77.8 257 26.8
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 2.6e-12 77.0 255 29.0
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 3.4e-12 76.6 291 25.4
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 3.4e-12 76.6 238 26.1
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 7.6e-12 75.5 278 27.0
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 1.3e-11 74.7 256 26.6
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 1.3e-11 74.7 253 26.9
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 1.7e-11 74.3 275 25.5
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 2.2e-11 73.9 264 26.1
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 2.2e-11 73.9 249 26.9
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 2.9e-11 73.6 274 24.8
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 2.9e-11 73.6 282 24.5
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 2.9e-11 73.6 297 25.9
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 3.8e-11 73.2 271 27.3
Pp3c10_19560 Physcomitrium patens HOM05D007245 ORTHO05D009049 3.8e-11 73.2 284 25.7
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 3.8e-11 73.2 266 27.1
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 4.9e-11 72.8 282 24.5
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 4.9e-11 72.8 295 26.1
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 8.4e-11 72.0 280 23.6
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 8.4e-11 72.0 266 25.6
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 1.1e-10 71.6 252 29.0
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 1.4e-10 71.2 286 26.2
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 1.4e-10 71.2 93 39.8
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 1.4e-10 71.2 266 27.8
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 1.4e-10 71.2 268 26.9
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 1.9e-10 70.9 260 25.4
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 2.4e-10 70.5 253 26.9
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 2.4e-10 70.5 270 25.2
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 3.2e-10 70.1 282 23.8
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 7.1e-10 68.9 287 23.7
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 9.3e-10 68.6 278 23.7
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 9.3e-10 68.6 277 25.6
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 2.7e-09 67.0 268 26.5
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 3.5e-09 66.6 204 25.5
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 7.8e-09 65.5 107 33.6
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 7.8e-09 65.5 272 24.6
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 3.9e-08 63.2 267 25.5
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 6.6e-08 62.4 294 23.8
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 1.9e-07 60.8 268 25.7
TWI60G0004 Tripterygium wilfordii HOM05D001193 ORTHO05D001016 7.3e-07 58.9 248 27.0
unitig_749.g14104 Utricularia gibba HOM05D001193 ORTHO05D001016 7.3e-07 58.9 272 26.5
Pp3c12_14270 Physcomitrium patens HOM05D007245 ORTHO05D009049 9.6e-07 58.5 216 25.0
AUR62042868 Chenopodium quinoa HOM05D007245 ORTHO05D009049 1.3e-06 58.2 88 31.8
CSS0018231 Camellia sinensis var. sinensis HOM05D001193 ORTHO05D001016 3.6e-06 56.6 253 28.1
HPP92_025618 Vanilla planifolia HOM05D006160 ORTHO05D007674 4.8e-06 56.2 173 28.3
EL10Ac7g18003 Beta vulgaris HOM05D006160 ORTHO05D007674 6.2e-06 55.8 148 29.7
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 6.2e-06 55.8 261 25.7


User provided reference genes

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