Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001941m.g Citrus clementina HOM05D005899 ORTHO05D007445 1.0e-176 623.2 310 100.0
Ciclev10001942m.g Citrus clementina HOM05D005899 ORTHO05D007445 6.6e-171 604.0 310 96.1
RcHm_v2.0_Chr3g0451931 Rosa chinensis HOM05D005899 ORTHO05D007445 4.3e-138 495.0 308 80.5
FvH4_6g03430 Fragaria vesca HOM05D005899 ORTHO05D007445 2.4e-136 489.2 308 80.2
CiPaw.07G006200 Carya illinoinensis HOM05D005899 ORTHO05D007445 2.6e-135 485.7 296 80.7
arahy.Tifrunner.gnm1.ann1.41KAT0 Arachis hypogaea HOM05D005899 ORTHO05D007445 7.1e-133 477.6 310 76.5
Cfa006459 Carpinus fangiana HOM05D005899 ORTHO05D007445 7.1e-133 477.6 300 78.3
Duzib177G0382 Durio zibethinus HOM05D005899 ORTHO05D007445 3.5e-132 475.3 307 75.6
FAN02G1821 Fragaria x ananassa HOM05D005899 ORTHO05D007445 4.6e-132 474.9 297 79.8
QL03p024530 Quercus lobata HOM05D005899 ORTHO05D007445 1.3e-131 473.4 308 75.6
FAN14G1139 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.0e-131 472.2 310 77.4
MD12G1237200 Malus domestica HOM05D005899 ORTHO05D007445 8.7e-131 470.7 304 77.6
Duzib128G1862 Durio zibethinus HOM05D005899 ORTHO05D007445 1.5e-130 469.9 310 75.8
Thecc.05G288500 Theobroma cacao HOM05D005899 ORTHO05D007445 1.5e-130 469.9 317 74.1
TPR.G6971 Trifolium pratense HOM05D005899 ORTHO05D007445 4.8e-129 464.9 296 76.0
Manes.09G155900 Manihot esculenta HOM05D005899 ORTHO05D007445 8.1e-129 464.2 314 73.6
Gorai.007G285000 Gossypium raimondii HOM05D005899 ORTHO05D007445 1.1e-128 463.8 305 73.8
Prupe.6G339900 Prunus persica HOM05D005899 ORTHO05D007445 2.4e-128 462.6 309 74.4
Gohir.A11G255200 Gossypium hirsutum HOM05D005899 ORTHO05D007445 3.1e-128 462.2 305 73.8
Gohir.D11G264900 Gossypium hirsutum HOM05D005899 ORTHO05D007445 6.9e-128 461.1 305 73.8
Psat0s62g0080 Pisum sativum HOM05D005899 ORTHO05D007445 6.9e-128 461.1 298 74.5
VMungo0540G1799 Vigna mungo HOM05D005899 ORTHO05D007445 9.0e-128 460.7 304 74.3
CANSAT54G2589 Cannabis sativa HOM05D005899 ORTHO05D007445 4.5e-127 458.4 309 74.1
Lj1g0012490 Lotus japonicus HOM05D005899 ORTHO05D007445 1.7e-126 456.4 296 76.0
Medtr7g114750 Medicago truncatula HOM05D005899 ORTHO05D007445 2.9e-126 455.7 302 74.2
Glyma.19G243000 Glycine max HOM05D005899 ORTHO05D007445 6.4e-126 454.5 302 73.2
Ca_09408_v3 Cicer arietinum L. HOM05D005899 ORTHO05D007445 1.4e-125 453.4 303 73.6
Phvul.006G099800 Phaseolus vulgaris HOM05D005899 ORTHO05D007445 7.1e-125 451.1 304 72.7
Lalb_Chr15g0076871 Lupinus albus HOM05D005899 ORTHO05D007445 1.1e-122 443.7 296 71.6
BcaB03g11648 Brassica carinata HOM05D005899 ORTHO05D007445 1.5e-122 443.4 309 69.6
FAN05G2237 Fragaria x ananassa HOM05D005899 ORTHO05D007445 1.5e-122 443.4 308 73.4
CSS0047717 Camellia sinensis var. sinensis HOM05D005899 ORTHO05D007445 2.5e-122 442.6 296 71.6
PGR083G2155 Punica granatum HOM05D005899 ORTHO05D007445 2.5e-122 442.6 310 71.3
Potri.005G050600 Populus trichocarpa HOM05D005899 ORTHO05D007445 4.3e-122 441.8 305 70.2
Sabra15G0068500 Salix brachista HOM05D005899 ORTHO05D007445 4.3e-122 441.8 306 70.3
AT3G04880 Arabidopsis thaliana HOM05D005899 ORTHO05D007445 5.6e-122 441.4 308 70.5
Eucgr.L01763 Eucalyptus grandis HOM05D005899 ORTHO05D007445 5.6e-122 441.4 311 71.4
BolC5t34897H Brassica oleracea HOM05D005899 ORTHO05D007445 1.3e-121 440.3 308 70.5
CARHR079150 Cardamine hirsuta HOM05D005899 ORTHO05D007445 1.6e-121 439.9 307 71.0
C05p62440 Brassica napus HOM05D005899 ORTHO05D007445 2.1e-121 439.5 308 70.8
Aa31LG5G15270 Aethionema arabicum HOM05D005899 ORTHO05D007445 3.7e-121 438.7 302 69.9
BraA05t22981Z Brassica rapa HOM05D005899 ORTHO05D007445 4.8e-121 438.3 310 70.6
Sed0018425 Sechium edule HOM05D005899 ORTHO05D007445 4.8e-121 438.3 296 73.0
TWI56G0091 Tripterygium wilfordii HOM05D005899 ORTHO05D007445 4.8e-121 438.3 312 69.9
Cpa.g.sc117.66 Carica papaya HOM05D005899 ORTHO05D007445 4.0e-120 435.3 299 70.9
A05p42720 Brassica napus HOM05D005899 ORTHO05D007445 5.3e-120 434.9 310 69.7
TAR362G0589 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.5e-119 433.3 299 70.2
Dinv11553 Davidia involucrata HOM05D005899 ORTHO05D007445 5.8e-119 431.4 299 70.9
Oeu064565.1 Olea europaea HOM05D005899 ORTHO05D007445 1.4e-117 426.8 311 68.2
Rhsim07G0131800 Rhododendron simsii HOM05D005899 ORTHO05D007445 5.5e-117 424.9 303 69.6
Lj7P487T33 Lonicera japonica HOM05D005899 ORTHO05D007445 2.7e-116 422.5 299 70.2
THA.LOC104802822 Tarenaya hassleriana HOM05D005899 ORTHO05D007445 2.7e-116 422.5 302 67.9
vmacro14199 Vaccinium macrocarpon HOM05D005899 ORTHO05D007445 4.6e-116 421.8 311 68.2
Actinidia05763 Actinidia chinensis HOM05D005899 ORTHO05D007445 6.0e-116 421.4 296 68.6
QL03p024564 Quercus lobata HOM05D005899 ORTHO05D007445 1.3e-115 420.2 309 71.2
Sp3g03700 Schrenkiella parvula HOM05D005899 ORTHO05D007445 3.3e-114 415.6 307 67.8
PSO761G0524 Papaver somniferum HOM05D005899 ORTHO05D007445 1.3e-113 413.7 297 67.7
SHI18352 Sapria himalayana HOM05D005899 ORTHO05D007445 1.3e-113 413.7 315 66.0
MBI01_g13083_MAGBIO Magnolia biondii HOM05D005899 ORTHO05D007445 1.6e-113 413.3 298 67.8
Migut.N00303 Erythranthe guttata HOM05D005899 ORTHO05D007445 3.7e-113 412.1 309 67.0
Lsat_1_v5_gn_6_53000 Lactuca sativa HOM05D005899 ORTHO05D007445 3.7e-113 412.1 296 68.9
DCAR_006615 Daucus carota HOM05D005899 ORTHO05D007445 6.2e-113 411.4 309 66.3
Nitab4.5_0002361g0040 Nicotiana tabacum HOM05D005899 ORTHO05D007445 3.1e-112 409.1 301 66.8
PGSC0003DMG400022509 Solanum tuberosum HOM05D005899 ORTHO05D007445 5.3e-112 408.3 304 66.1
EL10Ac4g09173 Beta vulgaris HOM05D005899 ORTHO05D007445 1.2e-111 407.1 303 66.3
SGA_v2.0_scaffold517G52669 Striga asiatica HOM05D005899 ORTHO05D007445 1.2e-111 407.1 296 67.6
Solyc01g097800.3 Solanum lycopersicum HOM05D005899 ORTHO05D007445 1.7e-110 403.3 304 65.8
HanXRQChr02g0057281 Helianthus annuus HOM05D005899 ORTHO05D007445 2.9e-110 402.5 295 64.7
Oeu044665.1 Olea europaea HOM05D005899 ORTHO05D007445 4.9e-110 401.7 305 65.6
AUR62000983 Chenopodium quinoa HOM05D005899 ORTHO05D007445 1.4e-109 400.2 299 65.6
ECA233G4289 Erigeron canadensis HOM05D005899 ORTHO05D007445 2.5e-109 399.4 298 65.4
Sopen01g041400 Solanum pennellii HOM05D005899 ORTHO05D007445 9.3e-109 397.5 304 64.5
Sc13g0006240 Simmondsia chinensis HOM05D005899 ORTHO05D007445 3.9e-107 392.1 301 62.1
CDE05G2514 Ceratophyllum demersum HOM05D005899 ORTHO05D007445 1.9e-106 389.8 294 61.6
Cc02_g31760 Coffea canephora HOM05D005899 ORTHO05D007445 1.9e-106 389.8 309 62.8
Cfa006460 Carpinus fangiana HOM05D005899 ORTHO05D007445 3.7e-105 385.6 290 68.3
Atru.chr2.732 Acer truncatum HOM05D005899 ORTHO05D007445 3.1e-104 382.5 244 80.7
Atru.chr2.745 Acer truncatum HOM05D005899 ORTHO05D007445 5.3e-104 381.7 242 81.4
HPP92_023141 Vanilla planifolia HOM05D005899 ORTHO05D007445 6.9e-104 381.3 294 65.0
ATR0681G168 Amborella trichopoda HOM05D005899 ORTHO05D007445 9.0e-104 380.9 305 61.6
Sabra15G0041400 Salix brachista HOM05D005899 ORTHO05D007445 1.1e-98 364.0 306 61.8
TPR.G8897 Trifolium pratense HOM05D005899 ORTHO05D007445 2.5e-98 362.8 251 69.7
Zm00001eb162780 Zea mays HOM05D005899 ORTHO05D007445 3.3e-98 362.5 306 59.2
Os01g0542000 Oryza sativa ssp. japonica HOM05D005899 ORTHO05D007445 4.3e-98 362.1 309 59.5
CAN.G134.162 Capsicum annuum HOM05D005899 ORTHO05D007445 1.8e-96 356.7 308 61.7
SEGI_33796 Sequoiadendron giganteum HOM05D005899 ORTHO05D007445 1.8e-96 356.7 297 58.6
AL3G15170 Arabidopsis lyrata HOM05D005899 ORTHO05D007445 1.1e-93 347.4 229 69.9
Atru.chr2.742 Acer truncatum HOM05D005899 ORTHO05D007445 2.1e-92 343.2 240 76.7
FAN09G0887 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.6e-92 342.4 299 61.9
SMO367G0143 Selaginella moellendorffii HOM05D005899 ORTHO05D007445 4.7e-92 342.0 298 55.4
Nn4g26305 Nelumbo nucifera HOM05D005899 ORTHO05D007445 7.4e-90 334.7 241 69.7
Haze_04330 Corylus avellana HOM05D005899 ORTHO05D007445 7.2e-85 318.2 274 60.9
Pp3c6_4500 Physcomitrium patens HOM05D005899 ORTHO05D007445 4.5e-79 298.9 417 39.8
Peaxi162Scf00404g00009 Petunia axillaris HOM05D005899 ORTHO05D007445 6.7e-75 285.0 202 69.3
Eucgr.L02186 Eucalyptus grandis HOM05D005899 ORTHO05D007445 3.3e-74 282.7 303 49.8
Eucgr.L02099 Eucalyptus grandis HOM05D005899 ORTHO05D007445 1.8e-72 276.9 200 67.5
Eucgr.B01712 Eucalyptus grandis HOM05D005899 ORTHO05D007445 7.7e-71 271.6 294 51.7
Nitab4.5_0013433g0050 Nicotiana tabacum HOM05D005899 ORTHO05D007445 4.4e-66 255.8 191 60.7
Actinidia36917 Actinidia chinensis HOM05D005899 ORTHO05D007445 4.8e-65 252.3 200 64.0
Ah.04g162380 Amaranthus hybridus HOM05D005899 ORTHO05D007445 9.5e-61 238.0 174 63.2
Eucgr.B01710 Eucalyptus grandis HOM05D005899 ORTHO05D007445 2.3e-59 233.4 296 47.3
Carub.0003s0407 Capsella rubella HOM05D005899 ORTHO05D007445 2.8e-57 226.5 146 69.2
AUR62004985 Chenopodium quinoa HOM05D005899 ORTHO05D007445 8.3e-57 224.9 257 50.2
BcaNung06538 Brassica carinata HOM05D005899 ORTHO05D007445 9.2e-56 221.5 168 67.3
Sabra15G0057000 Salix brachista HOM05D005899 ORTHO05D007445 3.5e-55 219.5 146 67.8
Sabra15G0068600 Salix brachista HOM05D005899 ORTHO05D007445 3.5e-55 219.5 146 67.8
Sabra15G0056900 Salix brachista HOM05D005899 ORTHO05D007445 3.8e-54 216.1 146 67.1
Medtr8g098320 Medicago truncatula HOM05D005899 ORTHO05D007445 4.3e-53 212.6 164 68.3
unitig_744.g24569 Utricularia gibba HOM05D005899 ORTHO05D007445 5.6e-53 212.2 187 60.4
Dinv12477 Davidia involucrata HOM05D005899 ORTHO05D007445 6.1e-52 208.8 142 67.6
FAN05G4786 Fragaria x ananassa HOM05D005899 ORTHO05D007445 3.4e-50 203.0 102 89.2
AUR62004976 Chenopodium quinoa HOM05D005899 ORTHO05D007445 8.3e-49 198.4 160 63.8
Medtr7g114730 Medicago truncatula HOM05D005899 ORTHO05D007445 1.1e-45 188.0 161 61.5
Cfa006462 Carpinus fangiana HOM05D005899 ORTHO05D007445 4.0e-43 179.5 129 65.1
SGA_v2.0_scaffold31G12627 Striga asiatica HOM05D005899 ORTHO05D007445 1.7e-41 174.1 127 60.6
FAN05G4109 Fragaria x ananassa HOM05D005899 ORTHO05D007445 6.4e-41 172.2 116 81.9
TPR.G21843 Trifolium pratense HOM05D005899 ORTHO05D007445 7.0e-40 168.7 117 78.6
Carub.0003s0408 Capsella rubella HOM05D005899 ORTHO05D007445 3.0e-30 136.7 110 68.2
RcHm_v2.0_Chr7g0217791 Rosa chinensis HOM05D005899 ORTHO05D007445 1.5e-26 124.4 144 50.0
TAR140G0002 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.1e-23 114.0 107 57.9
TAR623G1042 Trochodendron aralioides HOM05D005899 ORTHO05D007445 2.1e-23 114.0 107 57.9
TAR375G0990 Trochodendron aralioides HOM05D005899 ORTHO05D007445 3.5e-23 113.2 108 58.3
TAR636G1090 Trochodendron aralioides HOM05D005899 ORTHO05D007445 8.7e-22 108.6 107 55.1
AUR62000980 Chenopodium quinoa HOM05D005899 ORTHO05D007445 4.3e-21 106.3 85 64.7
unitig_21.g20175 Utricularia gibba HOM05D005899 ORTHO05D007445 1.1e-16 91.7 84 56.0
PRCOL_00001982 Prasinoderma coloniale HOM05D005899 ORTHO05D007445 1.4e-16 91.3 152 36.8
TAR625G0400 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.4e-16 91.3 91 53.8
FvH4_7g17710 Fragaria vesca HOM05D005899 ORTHO05D045384 4.0e-11 73.2 68 55.9
FAN06G4129 Fragaria x ananassa HOM05D005899 ORTHO05D045384 6.9e-11 72.4 68 55.9
TAR375G0306 Trochodendron aralioides HOM05D005899 ORTHO05D007445 5.8e-10 69.3 54 70.4
TAR365G0745 Trochodendron aralioides HOM05D005899 ORTHO05D007445 1.0e-06 58.5 59 52.5
FvH4_1g21970 Fragaria vesca HOM05D010020 ORTHO05D015123 6.7e-06 55.8 95 43.2
FAN19G2556 Fragaria x ananassa HOM05D010020 ORTHO05D015123 6.7e-06 55.8 95 43.2


User provided reference genes

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