Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 2.1e-126 456.4 383 100.0
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 7.7e-113 411.4 394 88.3
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 7.5e-108 394.8 381 83.2
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 7.5e-108 394.8 399 78.9
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.7e-107 393.7 390 83.6
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 6.3e-107 391.7 387 86.0
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.4e-106 389.8 385 81.6
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 3.1e-106 389.4 386 81.3
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 3.1e-106 389.4 381 85.8
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.2e-105 387.5 385 79.7
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 1.6e-105 387.1 385 82.1
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 4.5e-105 385.6 222 82.9
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 7.7e-105 384.8 385 79.2
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 7.7e-105 384.8 384 81.2
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.3e-104 384.0 390 84.1
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 2.2e-104 383.3 403 81.6
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.2e-104 383.3 383 79.4
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 2.2e-104 383.3 383 79.4
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 2.9e-104 382.9 384 88.0
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 2.9e-104 382.9 383 85.9
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 3.8e-104 382.5 381 85.0
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 6.5e-104 381.7 222 85.1
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 1.1e-103 380.9 222 83.3
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.9e-103 380.2 385 83.6
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.5e-103 379.8 392 81.4
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 2.5e-103 379.8 392 81.4
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 2.5e-103 379.8 387 78.6
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 2.5e-103 379.8 435 77.2
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.5e-103 379.8 383 80.7
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 3.2e-103 379.4 388 78.4
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 4.2e-103 379.0 222 83.3
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 7.2e-103 378.3 389 83.0
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 7.2e-103 378.3 220 83.2
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 7.2e-103 378.3 381 71.4
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 9.4e-103 377.9 222 82.9
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 9.4e-103 377.9 222 82.9
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 9.4e-103 377.9 222 83.3
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 9.4e-103 377.9 384 84.1
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 1.2e-102 377.5 222 83.8
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 1.6e-102 377.1 222 79.7
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 2.1e-102 376.7 222 80.2
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 2.7e-102 376.3 221 85.5
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 2.7e-102 376.3 389 77.1
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 6.1e-102 375.2 222 85.1
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 8.0e-102 374.8 383 77.5
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.0e-101 374.4 387 77.3
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.4e-101 374.0 222 80.2
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 1.8e-101 373.6 381 84.8
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.8e-101 373.6 401 81.3
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 3.0e-101 372.9 411 77.9
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 4.0e-101 372.5 222 82.4
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 6.8e-101 371.7 382 79.1
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 6.8e-101 371.7 437 78.7
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 1.5e-100 370.5 382 83.0
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.5e-100 370.5 386 80.8
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 2.6e-100 369.8 222 78.4
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 4.4e-100 369.0 386 81.9
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 5.7e-100 368.6 386 82.4
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 5.7e-100 368.6 388 86.6
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 5.7e-100 368.6 190 90.0
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 7.5e-100 368.2 393 81.2
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 9.8e-100 367.9 190 90.5
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 1.3e-99 367.5 390 83.1
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 1.7e-99 367.1 190 90.0
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 2.2e-99 366.7 190 90.0
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 2.8e-99 366.3 219 81.7
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 3.7e-99 365.9 190 90.0
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 8.3e-99 364.8 224 80.8
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.1e-98 364.4 221 78.7
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 1.4e-98 364.0 222 81.1
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 1.4e-98 364.0 383 84.9
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 4.1e-98 362.5 190 87.9
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 4.1e-98 362.5 222 82.4
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 7.0e-98 361.7 406 73.6
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 7.0e-98 361.7 190 89.5
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 7.0e-98 361.7 222 80.6
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 7.0e-98 361.7 190 87.4
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 1.6e-97 360.5 190 87.4
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 1.6e-97 360.5 190 86.8
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.6e-97 360.5 190 87.9
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 2.7e-97 359.8 190 87.4
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 2.7e-97 359.8 188 87.8
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 3.5e-97 359.4 190 86.8
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 4.5e-97 359.0 216 85.6
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 4.5e-97 359.0 216 85.6
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 5.9e-97 358.6 188 87.8
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 1.0e-96 357.8 190 86.3
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-96 357.8 190 86.3
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.0e-96 357.8 190 86.3
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.0e-96 357.8 190 86.3
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 2.9e-96 356.3 190 87.4
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 4.3e-95 352.4 401 62.3
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 1.2e-94 350.9 190 86.3
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.0e-93 347.8 190 85.8
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 2.3e-93 346.7 400 57.5
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 8.9e-93 344.7 213 77.0
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.2e-92 344.4 190 84.2
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.5e-92 344.0 197 83.2
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.5e-92 344.0 190 84.2
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 3.7e-91 339.3 190 82.1
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 5.4e-90 335.5 211 77.3
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 7.0e-90 335.1 218 75.2
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 1.6e-89 334.0 190 83.2
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.6e-89 334.0 386 75.9
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 4.6e-89 332.4 190 80.0
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 7.8e-89 331.6 190 83.7
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 1.7e-88 330.5 222 73.4
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 3.9e-88 329.3 266 63.5
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 5.6e-87 325.5 396 55.1
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 1.2e-86 324.3 190 78.9
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 2.8e-86 323.2 167 90.4
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 8.9e-85 318.2 190 77.9
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 5.8e-84 315.5 200 77.0
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.0e-80 304.7 392 48.0
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 6.6e-80 302.0 222 72.5
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 9.5e-79 298.1 186 74.7
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 1.1e-71 274.6 190 62.6
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 9.9e-68 261.5 213 65.7
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 1.3e-56 224.6 185 54.6
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 7.3e-55 218.8 184 56.5
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 6.2e-54 215.7 328 72.3
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 2.9e-51 206.8 192 53.1
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 4.3e-47 193.0 97 91.8
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 5.3e-45 186.0 126 73.8
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 5.5e-42 176.0 94 86.2
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 2.5e-39 167.2 124 64.5
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.3e-24 118.2 109 56.0
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 3.0e-24 117.1 70 74.3
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 3.0e-24 117.1 70 74.3
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 5.7e-23 112.8 84 71.4
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 8.8e-16 89.0 60 68.3
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 1.8e-13 81.3 53 64.2
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 2.0e-12 77.8 69 56.5
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 1.4e-10 71.6 42 81.0
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 5.7e-07 59.7 29 93.1
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 2.2e-06 57.8 28 89.3
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 6.3e-06 56.2 119 37.0


User provided reference genes

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