Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000742m.g Citrus clementina HOM05D005865 ORTHO05D006867 0.0e+00 1110.1 558 100.0
Atru.chr13.184 Acer truncatum HOM05D005865 ORTHO05D006867 4.3e-213 745.0 568 68.8
Thecc.08G054600 Theobroma cacao HOM05D005865 ORTHO05D006867 3.8e-201 705.3 561 66.0
GSVIVG01008710001 Vitis vinifera HOM05D005865 ORTHO05D006867 2.3e-198 696.0 562 64.8
Cfa014029 Carpinus fangiana HOM05D005865 ORTHO05D006867 1.1e-195 687.2 565 65.1
Potri.005G247500 Populus trichocarpa HOM05D005865 ORTHO05D006867 4.5e-194 681.8 563 63.8
TAR381G0423 Trochodendron aralioides HOM05D005865 ORTHO05D006867 1.2e-191 673.7 543 65.4
CiPaw.07G141800 Carya illinoinensis HOM05D005865 ORTHO05D006867 4.0e-187 658.7 575 61.2
Hma1.2p1_1100F.1_g257160 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 9.0e-187 657.5 533 62.9
CSS0021595 Camellia sinensis var. sinensis HOM05D005865 ORTHO05D006867 4.5e-186 655.2 522 64.2
Duzib093G0711 Durio zibethinus HOM05D005865 ORTHO05D006867 4.5e-186 655.2 561 63.6
Actinidia37960 Actinidia chinensis HOM05D005865 ORTHO05D006867 7.1e-184 647.9 578 60.4
Gohir.A05G181600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 2.7e-183 646.0 559 62.1
Gohir.D05G184600 Gossypium hirsutum HOM05D005865 ORTHO05D006867 1.0e-182 644.0 557 62.5
Gorai.009G190100 Gossypium raimondii HOM05D005865 ORTHO05D006867 8.7e-182 641.0 559 62.1
Manes.18G007801 Manihot esculenta HOM05D005865 ORTHO05D006867 4.5e-178 628.6 460 68.9
Rhsim07G0252700 Rhododendron simsii HOM05D005865 ORTHO05D006867 1.1e-176 624.0 624 55.3
RcHm_v2.0_Chr6g0303901 Rosa chinensis HOM05D005865 ORTHO05D006867 1.1e-176 624.0 525 63.2
Nn5g30889 Nelumbo nucifera HOM05D005865 ORTHO05D006867 4.2e-176 622.1 534 60.1
MD08G1005300 Malus domestica HOM05D005865 ORTHO05D006867 3.5e-175 619.0 551 61.5
VMungo0647G1107 Vigna mungo HOM05D005865 ORTHO05D006867 8.7e-174 614.4 526 59.7
Lalb_Chr03g0033591 Lupinus albus HOM05D005865 ORTHO05D006867 4.3e-173 612.1 549 57.9
PSO541G4963 Papaver somniferum HOM05D005865 ORTHO05D006867 1.3e-172 610.5 540 57.4
vmacro04388 Vaccinium macrocarpon HOM05D005865 ORTHO05D006867 3.7e-172 609.0 636 54.7
Lsat_1_v5_gn_2_5921 Lactuca sativa HOM05D005865 ORTHO05D006867 8.2e-172 607.8 575 56.9
PSO675G0073 Papaver somniferum HOM05D005865 ORTHO05D006867 1.8e-171 606.7 564 56.7
Ah.00g000500 Amaranthus hybridus HOM05D005865 ORTHO05D006867 3.1e-171 605.9 532 60.2
Migut.N03192 Erythranthe guttata HOM05D005865 ORTHO05D006867 5.3e-171 605.1 569 56.9
Cc10_g00980 Coffea canephora HOM05D005865 ORTHO05D006867 5.9e-170 601.7 566 57.6
Phvul.001G001600 Phaseolus vulgaris HOM05D005865 ORTHO05D006867 1.7e-169 600.1 529 59.0
CANSAT56G1424 Cannabis sativa HOM05D005865 ORTHO05D006867 5.0e-169 598.6 550 59.3
Glyma.14G222900 Glycine max HOM05D005865 ORTHO05D006867 6.5e-169 598.2 528 59.1
DCAR_013898 Daucus carota HOM05D005865 ORTHO05D006867 8.5e-169 597.8 546 59.0
Sabra05G0191400 Salix brachista HOM05D005865 ORTHO05D006867 8.5e-169 597.8 589 56.0
Eucgr.F03532 Eucalyptus grandis HOM05D005865 ORTHO05D006867 1.9e-168 596.7 542 58.5
Sopen04g035760 Solanum pennellii HOM05D005865 ORTHO05D006867 5.5e-168 595.1 559 58.3
PGR031G3425 Punica granatum HOM05D005865 ORTHO05D006867 7.2e-168 594.7 544 58.5
Solyc04g082130.4 Solanum lycopersicum HOM05D005865 ORTHO05D006867 1.2e-167 594.0 554 58.3
arahy.Tifrunner.gnm1.ann1.88Q24L Arachis hypogaea HOM05D005865 ORTHO05D006867 3.6e-167 592.4 521 57.8
PGSC0003DMG400009964 Solanum tuberosum HOM05D005865 ORTHO05D006867 1.4e-166 590.5 565 57.7
Psat0s4771g0080 Pisum sativum HOM05D005865 ORTHO05D006867 3.9e-166 589.0 523 58.5
Lj5g0011422 Lotus japonicus HOM05D005865 ORTHO05D006867 1.5e-165 587.0 531 58.2
TWI36G0296 Tripterygium wilfordii HOM05D005865 ORTHO05D006867 3.3e-165 585.9 519 60.5
MSTRG.1133 Avicennia marina HOM05D005865 ORTHO05D006867 5.7e-165 585.1 564 56.7
ClCG05G015260 Citrullus lanatus HOM05D005865 ORTHO05D006867 1.3e-164 583.9 594 54.0
CsaV3_4G037060 Cucumis sativus L. HOM05D005865 ORTHO05D006867 1.3e-164 583.9 561 56.7
Sed0014892 Sechium edule HOM05D005865 ORTHO05D006867 1.7e-164 583.6 560 56.8
Dinv31911 Davidia involucrata HOM05D005865 ORTHO05D006867 1.1e-163 580.9 517 61.1
Peaxi162Scf00174g01413 Petunia axillaris HOM05D005865 ORTHO05D006867 6.9e-163 578.2 555 55.7
arahy.Tifrunner.gnm1.ann1.YCE7MW Arachis hypogaea HOM05D005865 ORTHO05D006867 1.5e-162 577.0 522 57.5
Aqoxy6G01868 Aquilegia oxysepala HOM05D005865 ORTHO05D006867 1.1e-160 570.9 546 56.0
ECA238G0937 Erigeron canadensis HOM05D005865 ORTHO05D006867 4.2e-160 568.9 539 57.5
Hund05136 Selenicereus undatus HOM05D005865 ORTHO05D006867 4.2e-160 568.9 548 57.8
HanXRQChr14g0428991 Helianthus annuus HOM05D005865 ORTHO05D006867 7.2e-160 568.2 548 55.8
Prupe.1G357400 Prunus persica HOM05D005865 ORTHO05D006867 7.2e-160 568.2 421 68.6
SGA_v2.0_scaffold25G11198 Striga asiatica HOM05D005865 ORTHO05D006867 2.1e-159 566.6 538 56.7
Lj4A15G44 Lonicera japonica HOM05D005865 ORTHO05D006867 4.7e-159 565.5 468 63.5
SalBow6G0433 Salvia bowleyana HOM05D005865 ORTHO05D006867 5.7e-157 558.5 555 55.5
FAN27G0680 Fragaria x ananassa HOM05D005865 ORTHO05D006867 9.7e-157 557.8 599 52.9
CARHR020860 Cardamine hirsuta HOM05D005865 ORTHO05D006867 2.4e-155 553.1 522 57.3
COL.COLO4_26054 Corchorus olitorius HOM05D005865 ORTHO05D006867 2.6e-154 549.7 560 55.7
QL02p013522 Quercus lobata HOM05D005865 ORTHO05D006867 5.0e-153 545.4 498 60.8
C05p19010 Brassica napus HOM05D005865 ORTHO05D006867 9.4e-152 541.2 531 54.4
BcaC05g25951 Brassica carinata HOM05D005865 ORTHO05D006867 1.6e-151 540.4 531 54.4
HPP92_014547 Vanilla planifolia HOM05D005865 ORTHO05D006867 3.6e-151 539.3 561 53.3
BcaNung03380 Brassica carinata HOM05D005865 ORTHO05D006867 6.1e-151 538.5 518 56.6
ATR0665G248 Amborella trichopoda HOM05D005865 ORTHO05D006867 8.0e-151 538.1 526 54.6
BolC5t30602H Brassica oleracea HOM05D005865 ORTHO05D006867 1.4e-150 537.3 528 54.9
AT1G20410 Arabidopsis thaliana HOM05D005865 ORTHO05D006867 2.3e-150 536.6 515 55.9
CAN.G311.92 Capsicum annuum HOM05D005865 ORTHO05D006867 2.3e-150 536.6 460 61.3
C07p23040 Brassica napus HOM05D005865 ORTHO05D006867 3.0e-150 536.2 524 55.7
BolC7t42845H Brassica oleracea HOM05D005865 ORTHO05D006867 3.0e-150 536.2 524 55.7
Carub.0001s1989 Capsella rubella HOM05D005865 ORTHO05D006867 3.0e-150 536.2 526 54.8
Sp1g18130 Schrenkiella parvula HOM05D005865 ORTHO05D006867 6.7e-150 535.0 523 55.8
AL1G33330 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 8.8e-150 534.6 523 54.9
BcaB07g32044 Brassica carinata HOM05D005865 ORTHO05D006867 1.1e-149 534.3 554 52.3
THA.LOC104813767 Tarenaya hassleriana HOM05D005865 ORTHO05D006867 1.3e-148 530.8 542 54.8
Thhalv10007426m.g Eutrema salsugineum HOM05D005865 ORTHO05D006867 2.2e-148 530.0 552 53.1
BraA07t29307Z Brassica rapa HOM05D005865 ORTHO05D006867 3.7e-148 529.3 517 55.9
BraA06t24751Z Brassica rapa HOM05D005865 ORTHO05D006867 8.2e-148 528.1 551 52.6
Medtr1g026400 Medicago truncatula HOM05D005865 ORTHO05D006867 1.2e-146 524.2 532 53.9
Aa31LG7G4730 Aethionema arabicum HOM05D005865 ORTHO05D006867 3.8e-145 519.2 553 53.5
FvH4_2g37810 Fragaria vesca HOM05D005865 ORTHO05D006867 1.0e-142 511.1 496 55.8
Zm00001eb074060 Zea mays HOM05D005865 ORTHO05D006867 2.2e-140 503.4 520 51.3
Os04g0561700 Oryza sativa ssp. japonica HOM05D005865 ORTHO05D006867 1.1e-139 501.1 521 51.2
A07p15800 Brassica napus HOM05D005865 ORTHO05D006867 2.4e-139 500.0 543 51.9
AL1G33260 Arabidopsis lyrata HOM05D005865 ORTHO05D006867 3.1e-139 499.6 523 52.8
Nitab4.5_0000588g0310 Nicotiana tabacum HOM05D005865 ORTHO05D006867 5.4e-139 498.8 569 50.1
CDE02G0067 Ceratophyllum demersum HOM05D005865 ORTHO05D006867 1.2e-138 497.7 534 52.4
MELO3C017004.2 Cucumis melo HOM05D005865 ORTHO05D006867 1.6e-135 487.3 559 51.9
Sc15g0004650 Simmondsia chinensis HOM05D005865 ORTHO05D006867 1.8e-134 483.8 391 65.2
AUR62013839 Chenopodium quinoa HOM05D005865 ORTHO05D006867 6.8e-134 481.9 554 48.7
unitig_747.g21718 Utricularia gibba HOM05D005865 ORTHO05D006867 6.3e-132 475.3 553 50.1
Ca_13490_v3 Cicer arietinum L. HOM05D005865 ORTHO05D006867 3.3e-128 463.0 344 68.3
A06p16480 Brassica napus HOM05D005865 ORTHO05D006867 7.0e-123 445.3 386 60.1
Hma1.2p1_1100F.1_g257170 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 1.3e-121 441.0 254 81.1
BcaB03g14323 Brassica carinata HOM05D005865 ORTHO05D006867 3.3e-112 409.8 257 75.5
AagrBONN_evm.TU.Sc2ySwM_344.4811 Anthoceros agrestis HOM05D005865 ORTHO05D006867 1.4e-107 394.4 579 41.5
Pp3c20_10980 Physcomitrium patens HOM05D005865 ORTHO05D006867 9.2e-107 391.7 554 40.8
Mapoly0006s0010 Marchantia polymorpha HOM05D005865 ORTHO05D006867 7.3e-104 382.1 538 40.3
Haze_22735 Corylus avellana HOM05D005865 ORTHO05D006867 1.4e-102 377.9 280 68.9
EL10Ac1g02030 Beta vulgaris HOM05D005865 ORTHO05D006867 6.8e-102 375.6 448 48.7
AUR62036767 Chenopodium quinoa HOM05D005865 ORTHO05D006867 9.6e-96 355.1 413 50.1
A07p15700 Brassica napus HOM05D005865 ORTHO05D006867 2.2e-92 344.0 213 76.1
SEGI_14934 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 7.6e-85 318.9 229 66.4
SMO364G0210 Selaginella moellendorffii HOM05D005865 ORTHO05D006867 2.9e-84 317.0 284 55.6
CBR_g81579 Chara braunii HOM05D005865 ORTHO05D006867 6.0e-74 282.7 456 36.8
BcaC07g42576 Brassica carinata HOM05D005865 ORTHO05D006867 5.1e-73 279.6 246 59.8
Cpa.g.sc26.238 Carica papaya HOM05D005865 ORTHO05D006867 1.1e-56 225.3 171 65.5
Cpa.g.sc26.237 Carica papaya HOM05D005865 ORTHO05D006867 5.3e-54 216.5 249 50.2
MCO16G112 Micromonas commoda HOM05D005865 ORTHO05D006867 3.4e-53 213.8 249 42.6
PRCOL_00003715 Prasinoderma coloniale HOM05D005865 ORTHO05D006867 1.8e-49 201.4 493 29.2
FAN15G0850 Fragaria x ananassa HOM05D005865 ORTHO05D006867 7.4e-40 169.5 225 45.8
MELO3C035627.2 Cucumis melo HOM05D005865 ORTHO05D006867 2.2e-39 167.9 191 52.4
Oeu025004.1 Olea europaea HOM05D005865 ORTHO05D006867 8.8e-33 146.0 186 44.1
A07p15690 Brassica napus HOM05D005865 ORTHO05D006867 1.1e-32 145.6 221 43.4
MD15G1004800 Malus domestica HOM05D005865 ORTHO05D006867 2.8e-31 141.0 106 69.8
Hma1.2p1_1100F.1_g257120 Hydrangea macrophylla HOM05D005865 ORTHO05D006867 4.5e-29 133.7 273 36.3
SHI04100 Sapria himalayana HOM05D005865 ORTHO05D006867 1.4e-25 122.1 228 35.5
Rhsim11G0079600 Rhododendron simsii HOM05D005865 ORTHO05D006867 5.2e-25 120.2 111 51.4
Cre12.g506900 Chlamydomonas reinhardtii HOM05D005865 ORTHO05D006867 1.4e-22 112.1 313 27.2
MELO3C032646.2 Cucumis melo HOM05D005865 ORTHO05D006867 2.1e-18 98.2 73 63.0
Cpa.g.sc26.239 Carica papaya HOM05D005865 ORTHO05D006867 1.4e-17 95.5 48 91.7
FAN20G0402 Fragaria x ananassa HOM05D005865 ORTHO05D006867 1.8e-17 95.1 168 39.9
SEGI_13350 Sequoiadendron giganteum HOM05D005865 ORTHO05D006867 2.3e-17 94.7 145 41.4
SHI04101 Sapria himalayana HOM05D005865 ORTHO05D006867 1.5e-16 92.0 146 39.0
BcaB03g14322 Brassica carinata HOM05D005865 ORTHO05D006867 2.8e-15 87.8 131 38.9
MELO3C035121.2 Cucumis melo HOM05D005865 ORTHO05D000044 2.8e-15 87.8 65 66.2
EL10Ac1g02029 Beta vulgaris HOM05D056011 ORTHO05D006867 7.7e-13 79.7 39 87.2
Rhsim09G0051200 Rhododendron simsii HOM05D005337 ORTHO05D006567 1.7e-12 78.6 148 35.8
MELO3C031410.2 Cucumis melo HOM05D005865 ORTHO05D006867 7.3e-11 73.2 111 39.6
Lj2A91G56 Lonicera japonica HOM05D005865 ORTHO05D006867 1.4e-09 68.9 38 81.6
Psat5g202200 Pisum sativum HOM05D001594 ORTHO05D002862 3.7e-07 60.8 89 37.1


User provided reference genes

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