Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 0.0e+00 2017.7 1025 100.0
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 0.0e+00 1720.7 1024 85.8
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1619.0 1023 80.4
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 0.0e+00 1610.9 1023 80.2
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1605.5 1005 81.0
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 0.0e+00 1604.0 1033 79.6
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1597.4 1024 79.9
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 0.0e+00 1586.2 1024 79.7
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1583.5 1030 79.0
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1577.8 1022 78.5
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 0.0e+00 1577.0 1023 77.1
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1576.6 1024 79.5
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 0.0e+00 1576.2 1030 78.7
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1574.7 1030 78.3
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 0.0e+00 1574.3 1023 78.2
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 0.0e+00 1566.6 1010 79.3
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 0.0e+00 1564.3 1015 77.1
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 0.0e+00 1561.6 1022 76.7
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1554.7 1031 77.9
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1552.3 1023 77.6
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1551.6 1024 78.0
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 0.0e+00 1550.8 1023 77.9
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 0.0e+00 1548.9 1031 77.5
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1541.9 1029 76.8
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1540.4 1023 76.0
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1539.6 1026 76.1
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1538.1 1005 78.0
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 0.0e+00 1536.5 973 80.8
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 0.0e+00 1531.9 1024 76.3
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1531.5 1023 76.6
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 0.0e+00 1531.2 1073 74.5
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 0.0e+00 1525.8 1009 77.6
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1525.0 1017 76.9
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 0.0e+00 1522.7 1025 77.1
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1519.2 1032 76.6
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 0.0e+00 1517.3 1023 76.1
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1516.5 1032 76.5
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1516.1 1031 76.3
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1514.6 1032 76.3
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1514.6 1009 76.7
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1512.3 1038 76.0
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 0.0e+00 1511.1 1023 77.1
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 0.0e+00 1509.2 1050 74.4
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 0.0e+00 1506.9 1034 74.9
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 0.0e+00 1505.0 1031 74.8
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 0.0e+00 1504.2 1033 75.9
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 0.0e+00 1498.8 1030 74.4
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 0.0e+00 1494.9 1018 75.9
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1494.6 1020 75.1
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1492.2 1018 75.7
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1491.1 1048 74.0
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1485.7 1011 75.1
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 0.0e+00 1485.3 1026 75.3
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 0.0e+00 1484.9 1004 75.0
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 0.0e+00 1484.2 1018 75.3
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 0.0e+00 1482.2 1017 75.2
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 0.0e+00 1482.2 1012 75.4
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 0.0e+00 1480.3 1025 75.0
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 0.0e+00 1478.8 1028 74.6
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 0.0e+00 1477.6 1029 74.5
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 0.0e+00 1477.2 1021 75.0
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 0.0e+00 1471.4 1004 75.3
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 0.0e+00 1471.4 1026 74.2
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 0.0e+00 1462.2 1064 72.7
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 0.0e+00 1461.8 1014 74.3
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1454.9 1025 73.8
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1454.9 1025 73.8
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 0.0e+00 1449.9 1004 74.6
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 0.0e+00 1447.6 1016 73.8
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 0.0e+00 1444.9 1023 72.4
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 0.0e+00 1441.0 1015 73.0
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 0.0e+00 1440.6 1016 73.4
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 0.0e+00 1436.8 985 75.1
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1433.7 1058 71.9
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 0.0e+00 1432.5 1009 73.7
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 0.0e+00 1429.5 1028 72.7
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 0.0e+00 1427.9 1014 74.2
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 0.0e+00 1424.1 1013 73.2
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 0.0e+00 1424.1 935 77.5
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 0.0e+00 1421.8 997 72.8
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 0.0e+00 1421.4 984 74.5
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 0.0e+00 1419.1 1065 69.3
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 0.0e+00 1418.7 1027 71.1
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 0.0e+00 1416.0 1014 72.8
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 0.0e+00 1416.0 1008 71.9
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 0.0e+00 1415.2 984 74.5
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1414.8 1027 71.5
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1414.1 1027 71.7
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 0.0e+00 1413.3 1019 71.2
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1411.4 1010 73.5
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 0.0e+00 1409.0 1012 72.5
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1404.4 1009 73.1
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1402.9 1010 72.9
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 0.0e+00 1400.2 1004 72.3
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1399.8 986 73.6
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 0.0e+00 1398.6 1020 71.1
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1397.1 888 81.4
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1395.9 987 73.7
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1395.6 987 73.6
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 0.0e+00 1395.2 887 80.0
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 0.0e+00 1388.6 1026 70.4
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1387.1 1030 69.3
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1384.8 1025 69.6
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1373.6 913 78.1
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 0.0e+00 1372.1 995 71.5
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1367.1 987 71.5
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 0.0e+00 1359.7 1006 70.3
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 0.0e+00 1356.3 1032 68.1
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1349.7 995 71.2
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 0.0e+00 1346.6 1028 69.2
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 0.0e+00 1344.7 993 71.3
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1340.1 992 71.1
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 0.0e+00 1336.2 1042 68.0
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 0.0e+00 1333.2 1010 70.0
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 0.0e+00 1330.9 1029 68.1
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 0.0e+00 1324.3 1009 69.7
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 0.0e+00 1322.0 1018 68.4
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 0.0e+00 1248.0 1017 66.1
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 0.0e+00 1247.3 1035 64.3
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 0.0e+00 1243.0 928 69.4
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 0.0e+00 1228.4 1026 64.5
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1218.4 1030 65.4
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 0.0e+00 1208.7 1039 64.6
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 0.0e+00 1196.4 992 64.0
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 0.0e+00 1184.5 851 71.9
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 0.0e+00 1174.8 1007 62.9
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 0.0e+00 1161.4 1026 60.2
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 0.0e+00 1147.9 1064 59.7
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 0.0e+00 1124.4 996 61.4
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 5.3e-310 1067.8 1022 60.8
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 8.5e-300 1033.9 881 61.2
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.2e-290 1003.4 803 68.2
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 3.8e-284 981.9 849 62.2
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 1.8e-270 936.4 719 70.1
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 4.3e-267 925.2 991 53.3
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 5.2e-265 918.3 754 67.9
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 2.0e-261 906.4 724 72.2
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 2.8e-258 896.0 993 51.1
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.1e-250 869.8 989 49.6
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.7e-247 860.1 1011 48.9
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 1.6e-242 843.6 1016 47.9
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 6.4e-231 805.1 829 53.4
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 2.8e-226 789.6 821 54.0
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 4.5e-208 729.2 913 46.7
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 1.9e-198 697.2 652 58.4
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 3.9e-188 662.9 828 50.2
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 2.6e-176 623.6 635 55.6
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 1.9e-174 617.5 969 40.8
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.4e-161 572.8 628 52.1
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 2.0e-155 554.3 665 49.9
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.5e-150 537.3 635 49.3
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 1.7e-146 524.6 1115 34.3
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 4.4e-139 500.0 382 66.2
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 9.2e-129 465.7 543 50.3
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 5.8e-123 446.4 625 45.8
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 9.3e-113 412.5 318 68.9
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 7.6e-99 366.3 236 77.5
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 1.6e-88 332.0 268 65.7
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.3e-87 328.9 355 53.0
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 5.3e-76 290.4 1023 28.7
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.4e-71 275.8 254 60.2
CDE02G2628 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.2e-59 236.1 219 54.3
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 6.5e-58 230.3 1090 25.3
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 7.7e-51 206.8 935 24.8
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 8.5e-50 203.4 174 62.6
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 1.0e-47 196.4 155 67.1
Pp3c19_9596 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.8e-47 195.7 233 44.6
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.2e-46 193.0 172 54.7
Hma1.2p1_0468F.1_g158780 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.2e-40 172.9 150 57.3
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 3.1e-36 158.3 187 48.7
SalBow1G6973 Salvia bowleyana HOM05D003977 ORTHO05D004536 5.2e-31 141.0 129 56.6
SalBow2G2207 Salvia bowleyana HOM05D003977 ORTHO05D004536 2.1e-24 119.0 113 54.9
Hma1.2p1_0112F.1_g054450 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.6e-24 118.2 88 60.2
Hma1.2p1_1036F.1_g250510 Hydrangea macrophylla HOM05D000462 ORTHO05D004536 3.6e-24 118.2 88 60.2
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.2e-14 86.7 63 74.6
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 4.9e-13 81.3 60 73.3
Medtr3g006170 Medicago truncatula HOM05D003977 ORTHO05D004536 1.9e-12 79.3 65 60.0
Actinidia33992 Actinidia chinensis HOM05D003977 ORTHO05D004536 4.4e-06 58.2 48 66.7


User provided reference genes

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