Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 4677.8 2376 100.0
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 3174.0 2435 67.3
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 3127.4 2434 66.0
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 3093.9 2461 65.5
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 3084.7 2405 66.3
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 3049.2 2446 63.9
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 3028.0 2436 63.3
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 3023.8 2103 73.2
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 3012.6 2432 63.4
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 3012.2 2432 63.6
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 3007.6 2457 63.4
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 3002.6 2425 63.2
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2984.9 2445 62.9
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2929.8 2437 61.8
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2920.6 2442 61.8
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2914.0 2442 61.6
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2906.7 2434 61.8
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2901.3 2441 61.9
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 2889.4 2446 60.9
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2887.8 2436 60.3
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2869.3 2438 61.1
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2841.6 2436 59.2
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2829.7 2470 58.3
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2828.5 2444 59.5
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2814.6 2470 58.2
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2813.5 2436 60.4
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2811.6 2427 59.8
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2811.2 2470 58.1
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2807.3 2470 58.0
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2773.4 2484 58.7
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2726.0 2426 57.9
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2719.5 2425 58.1
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2694.8 2440 57.5
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2686.4 2427 57.2
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2684.8 2375 57.9
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2684.4 2425 56.8
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2682.5 2427 57.1
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2680.2 2402 60.1
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2678.7 2422 57.1
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2672.1 2463 57.4
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2671.0 2424 57.3
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2659.4 2440 56.9
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2648.6 2432 56.6
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2645.5 2444 56.6
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2641.3 2477 55.8
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2638.6 2468 55.4
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2634.4 2468 55.3
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2603.5 2446 55.0
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2598.9 2433 56.7
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2562.3 2404 58.1
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2550.0 2439 55.7
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2547.7 2423 54.9
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2543.1 2440 55.5
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2538.1 2424 55.1
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2537.3 2425 55.4
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2532.7 2423 54.4
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2524.2 2423 55.5
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2517.3 2395 55.2
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2512.3 2426 54.8
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2511.9 2426 54.6
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2501.5 2453 54.0
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2496.5 2451 54.0
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2494.9 2449 54.0
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 2492.2 2443 54.4
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2488.4 2433 55.1
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2479.5 2431 53.2
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2476.0 2440 53.0
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2464.9 2431 53.5
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2454.5 2427 53.2
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2447.9 2402 54.2
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2445.6 2452 53.7
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2444.8 2431 52.8
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2428.3 2441 52.8
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2422.5 2450 52.1
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2419.8 2439 52.6
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2408.3 2441 51.8
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2403.2 2434 52.3
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2365.1 2448 51.0
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2347.0 2453 51.4
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2340.1 2442 50.4
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2339.3 2432 50.3
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2336.6 2434 50.8
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2326.6 2467 50.7
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2325.8 2434 50.7
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2303.5 2437 49.9
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2280.4 2078 57.7
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2271.9 2078 57.7
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 2036.9 2257 48.1
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 1989.9 2405 45.2
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1976.8 1839 55.1
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 1927.5 2414 44.7
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1799.6 1562 59.6
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 1791.5 2510 41.4
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1776.5 1462 62.0
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1761.9 1462 61.6
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1758.8 1379 64.7
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1743.0 1646 55.8
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1649.0 2318 41.5
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1496.5 1464 54.8
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1387.9 1097 64.0
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1382.9 1388 53.5
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1298.9 1426 50.6
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1229.9 1543 43.6
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1141.7 1122 53.6
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1103.2 1021 55.5
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 4.2e-302 1042.7 1392 44.0
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 3.1e-289 1000.0 1007 52.7
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 5.6e-286 989.2 1041 50.2
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 1.0e-255 888.6 2572 27.9
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 6.7e-239 832.8 912 48.6
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.5e-235 821.6 1486 35.8
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 2.0e-227 794.7 2102 29.1
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 6.0e-224 783.1 2160 29.4
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 2.3e-223 781.2 797 51.8
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 1.5e-222 778.5 766 51.7
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 1.8e-220 771.5 822 50.2
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 1.2e-187 662.5 2607 24.7
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 3.3e-177 627.9 591 52.6
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 4.3e-145 521.2 819 37.7
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 6.9e-127 460.7 408 56.6
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.1e-123 449.1 476 50.2
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 9.6e-121 440.3 479 49.9
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 1.0e-114 420.2 293 68.6
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 5.7e-97 361.3 342 57.0
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 1.8e-90 339.7 309 55.3
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 1.5e-89 336.7 213 75.1
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 4.4e-89 335.1 378 45.5
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 1.8e-74 286.6 365 44.4
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 6.3e-72 278.1 481 34.5
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 3.1e-71 275.8 438 39.3
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 3.2e-68 265.8 198 66.2
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 4.7e-67 261.9 299 47.2
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.8e-61 242.3 380 41.1
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 9.8e-49 201.1 311 42.4
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 4.9e-48 198.7 122 80.3
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 1.1e-44 187.6 150 64.7
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.8e-43 183.0 130 69.2
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 4.7e-43 182.2 216 44.9
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 1.4e-42 180.6 122 71.3
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 6.8e-42 178.3 148 59.5
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 2.0e-41 176.8 192 53.6
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 5.4e-39 168.7 274 39.8
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 6.2e-35 155.2 108 73.1
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 4.0e-34 152.5 325 35.1
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.6e-33 148.3 291 35.4
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 7.1e-31 141.7 139 49.6
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.1e-26 127.9 85 71.8
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.8e-26 127.1 125 52.0
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 4.0e-26 125.9 89 67.4
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 7.1e-23 115.2 161 44.7
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 7.8e-22 111.7 140 44.3
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 3.9e-21 109.4 779 20.2
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 1.5e-20 107.5 106 50.0
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 6.2e-19 102.1 67 71.6
A02p40370 Brassica napus HOM05D004333 ORTHO05D005363 3.4e-17 96.3 107 44.9
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.4e-16 92.0 197 34.5
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 5.4e-15 89.0 282 25.9
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 9.3e-15 88.2 76 55.3
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 1.2e-14 87.8 76 55.3
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 3.6e-11 76.3 98 41.8
arahy.Tifrunner.gnm1.ann1.UK8Y7I Arachis hypogaea HOM05D004333 ORTHO05D005363 1.1e-10 74.7 128 38.3
SHI08288 Sapria himalayana HOM05D003057 ORTHO05D003904 2.0e-09 70.5 56 60.7
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 3.4e-09 69.7 78 43.6
BcaC03g17980 Brassica carinata HOM05D004333 ORTHO05D005363 9.9e-09 68.2 86 47.7
Psat0ss3938g0040 Pisum sativum HOM05D001673 ORTHO05D000895 2.7e-06 60.1 39 71.8


User provided reference genes

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