Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G118900 Carya illinoinensis HOM05D003223 ORTHO05D004865 2.9e-288 994.6 522 100.0
Cfa020911 Carpinus fangiana HOM05D003223 ORTHO05D004865 3.6e-246 854.7 547 81.5
Haze_19344 Corylus avellana HOM05D003223 ORTHO05D004865 8.0e-246 853.6 547 81.7
QL10p038436 Quercus lobata HOM05D003223 ORTHO05D004865 1.4e-245 852.8 546 81.3
Thecc.05G191900 Theobroma cacao HOM05D003223 ORTHO05D004865 3.2e-234 815.1 545 78.7
Manes.17G018800 Manihot esculenta HOM05D003223 ORTHO05D004865 7.0e-234 813.9 548 78.1
Atru.chr8.881 Acer truncatum HOM05D003223 ORTHO05D004865 4.3e-231 804.7 544 76.8
Dinv18129 Davidia involucrata HOM05D003223 ORTHO05D004865 1.2e-230 803.1 546 78.4
Ca_17035_v3 Cicer arietinum L. HOM05D003223 ORTHO05D004865 1.5e-228 796.2 545 76.9
MD08G1222500 Malus domestica HOM05D003223 ORTHO05D004865 3.4e-228 795.0 549 76.0
Glyma.06G160800 Glycine max HOM05D003223 ORTHO05D004865 9.8e-228 793.5 545 76.5
Cpa.g.sc170.60 Carica papaya HOM05D003223 ORTHO05D004865 2.2e-227 792.3 549 78.3
Duzib177G0522 Durio zibethinus HOM05D003223 ORTHO05D004865 2.2e-227 792.3 544 76.5
Ciclev10018565m.g Citrus clementina HOM05D003223 ORTHO05D004865 6.4e-227 790.8 544 77.0
Potri.T012200 Populus trichocarpa HOM05D003223 ORTHO05D004865 1.1e-226 790.0 550 76.9
Prupe.1G560300 Prunus persica HOM05D003223 ORTHO05D004865 1.1e-226 790.0 552 75.7
Dinv17906 Davidia involucrata HOM05D003223 ORTHO05D004865 1.4e-226 789.6 546 76.9
MD15G1415900 Malus domestica HOM05D003223 ORTHO05D004865 2.4e-226 788.9 549 75.6
Phvul.009G158500 Phaseolus vulgaris HOM05D003223 ORTHO05D004865 4.1e-226 788.1 548 75.0
Gorai.013G132500 Gossypium raimondii HOM05D003223 ORTHO05D004865 5.4e-226 787.7 543 76.6
Cc11_g05040 Coffea canephora HOM05D003223 ORTHO05D004865 7.0e-226 787.3 547 75.0
Gohir.D13G118000 Gossypium hirsutum HOM05D003223 ORTHO05D004865 7.0e-226 787.3 543 76.4
Psat5g057040 Pisum sativum HOM05D003223 ORTHO05D004865 7.0e-226 787.3 545 75.2
Hma1.2p1_1945F.1_g308610 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 9.2e-226 786.9 546 76.9
VMungo1127G0078 Vigna mungo HOM05D003223 ORTHO05D004865 1.2e-225 786.6 548 76.3
Gohir.A13G115100 Gossypium hirsutum HOM05D003223 ORTHO05D004865 7.8e-225 783.9 543 76.2
Glyma.04G204800 Glycine max HOM05D003223 ORTHO05D004865 3.0e-224 781.9 545 75.6
Potri.004G137100 Populus trichocarpa HOM05D003223 ORTHO05D004865 3.9e-224 781.6 548 75.2
ClCG02G016210 Citrullus lanatus HOM05D003223 ORTHO05D004865 6.6e-224 780.8 548 75.5
CsaV3_2G004550 Cucumis sativus L. HOM05D003223 ORTHO05D004865 1.1e-223 780.0 548 75.4
COL.COLO4_04896 Corchorus olitorius HOM05D003223 ORTHO05D004865 1.9e-223 779.2 545 76.7
Eucgr.H05054 Eucalyptus grandis HOM05D003223 ORTHO05D004865 1.9e-223 779.2 545 76.0
Medtr3g097560 Medicago truncatula HOM05D003223 ORTHO05D004865 1.9e-223 779.2 545 74.5
CSS0030679 Camellia sinensis var. sinensis HOM05D003223 ORTHO05D004865 2.5e-223 778.9 542 75.6
Oeu024852.1 Olea europaea HOM05D003223 ORTHO05D004865 5.6e-223 777.7 542 74.4
vmacro18729 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 7.3e-223 777.3 550 76.4
Lalb_Chr08g0237721 Lupinus albus HOM05D003223 ORTHO05D004865 1.2e-222 776.5 549 75.4
MELO3C004336.2 Cucumis melo HOM05D003223 ORTHO05D004865 1.6e-222 776.2 548 75.0
Hund13720 Selenicereus undatus HOM05D003223 ORTHO05D004865 2.1e-222 775.8 544 75.4
DCAR_009034 Daucus carota HOM05D003223 ORTHO05D004865 2.8e-222 775.4 545 76.1
Sabra19G0001800 Salix brachista HOM05D003223 ORTHO05D004865 4.7e-222 774.6 549 75.2
DCAR_020438 Daucus carota HOM05D003223 ORTHO05D004865 6.2e-222 774.2 545 73.9
Sabra19G0010900 Salix brachista HOM05D003223 ORTHO05D004865 1.1e-221 773.5 549 74.9
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.8e-221 772.7 545 76.1
Sed0001545 Sechium edule HOM05D003223 ORTHO05D004865 1.8e-221 772.7 545 75.2
Sc09g0001160 Simmondsia chinensis HOM05D003223 ORTHO05D004865 2.3e-221 772.3 547 74.2
Hma1.2p1_1945F.1_g308620 Hydrangea macrophylla HOM05D003223 ORTHO05D004865 3.1e-221 771.9 545 76.0
PGR031G3736 Punica granatum HOM05D003223 ORTHO05D004865 3.1e-221 771.9 545 76.3
vmacro06742 Vaccinium macrocarpon HOM05D003223 ORTHO05D004865 2.0e-220 769.2 547 76.8
Lalb_Chr11g0068881 Lupinus albus HOM05D003223 ORTHO05D004865 5.8e-220 767.7 547 74.6
Sed0007652 Sechium edule HOM05D003223 ORTHO05D004865 3.7e-219 765.0 544 74.6
RcHm_v2.0_Chr7g0225451 Rosa chinensis HOM05D003223 ORTHO05D004865 8.3e-219 763.8 552 74.1
Rhsim02G0071800 Rhododendron simsii HOM05D003223 ORTHO05D004865 1.9e-218 762.7 549 76.0
Lj3A927G13 Lonicera japonica HOM05D003223 ORTHO05D004865 2.4e-218 762.3 552 72.6
arahy.Tifrunner.gnm1.ann1.KDQ8ZI Arachis hypogaea HOM05D003223 ORTHO05D004865 1.2e-217 760.0 548 74.6
FvH4_5g30560 Fragaria vesca HOM05D003223 ORTHO05D004865 1.2e-217 760.0 552 73.7
TWI31G0834 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 2.1e-217 759.2 545 73.6
Lj1g0018228 Lotus japonicus HOM05D003223 ORTHO05D004865 3.5e-217 758.4 545 73.2
arahy.Tifrunner.gnm1.ann1.MF06QU Arachis hypogaea HOM05D003223 ORTHO05D004865 4.6e-217 758.1 548 74.5
FAN18G2297 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.0e-216 756.9 548 73.7
THA.LOC104800414 Tarenaya hassleriana HOM05D003223 ORTHO05D004865 1.3e-216 756.5 545 74.1
FAN08G3025 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.7e-216 756.1 552 73.4
PGSC0003DMG400027506 Solanum tuberosum HOM05D003223 ORTHO05D004865 2.3e-216 755.7 544 73.9
CANSAT54G2149 Cannabis sativa HOM05D003223 ORTHO05D004865 3.9e-216 755.0 548 75.5
Sopen01g040540 Solanum pennellii HOM05D003223 ORTHO05D004865 5.1e-216 754.6 546 73.3
Nitab4.5_0006602g0010 Nicotiana tabacum HOM05D003223 ORTHO05D004865 8.6e-216 753.8 545 73.2
Solyc01g096830.3 Solanum lycopersicum HOM05D003223 ORTHO05D004865 1.1e-215 753.4 546 73.3
CAN.G134.46 Capsicum annuum HOM05D003223 ORTHO05D004865 1.5e-215 753.1 545 73.9
FAN13G2597 Fragaria x ananassa HOM05D003223 ORTHO05D004865 1.6e-214 749.6 552 72.3
EL10Ac2g04575 Beta vulgaris HOM05D003223 ORTHO05D004865 3.1e-213 745.3 547 70.4
TWI75G0742 Tripterygium wilfordii HOM05D003223 ORTHO05D004865 6.8e-213 744.2 542 73.1
Ah.04g166340 Amaranthus hybridus HOM05D002795 ORTHO05D004865 2.6e-212 742.3 544 71.1
Oeu044063.4 Olea europaea HOM05D003223 ORTHO05D004865 7.6e-212 740.7 618 64.9
Aqoxy4G02048 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 9.9e-212 740.3 545 72.1
MSTRG.8249 Avicennia marina HOM05D003223 ORTHO05D004865 1.7e-211 739.6 543 71.3
Nn3g20196 Nelumbo nucifera HOM05D003223 ORTHO05D004865 1.4e-210 736.5 536 72.8
BcaC04g23507 Brassica carinata HOM05D003223 ORTHO05D004865 1.9e-210 736.1 545 72.8
AUR62008992 Chenopodium quinoa HOM05D003223 ORTHO05D004865 1.2e-209 733.4 546 70.5
AUR62023309 Chenopodium quinoa HOM05D003223 ORTHO05D004865 3.5e-209 731.9 545 70.6
Thhalv10003540m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 1.7e-208 729.6 545 71.6
Carub.0006s2139 Capsella rubella HOM05D003223 ORTHO05D004865 3.0e-208 728.8 545 72.3
Migut.N00792 Erythranthe guttata HOM05D003223 ORTHO05D004865 5.1e-208 728.0 546 70.1
PSO339G5522 Papaver somniferum HOM05D003223 ORTHO05D004865 8.7e-208 727.2 543 70.7
AL6G34910 Arabidopsis lyrata HOM05D003223 ORTHO05D004865 1.1e-207 726.9 545 73.4
Nitab4.5_0002687g0120 Nicotiana tabacum HOM05D003223 ORTHO05D004865 1.9e-207 726.1 497 75.9
PSO384G3388 Papaver somniferum HOM05D003223 ORTHO05D004865 3.3e-207 725.3 543 70.7
A09p06850 Brassica napus HOM05D003223 ORTHO05D004865 9.6e-207 723.8 545 71.7
Sp2g23580 Schrenkiella parvula HOM05D003223 ORTHO05D004865 9.6e-207 723.8 545 71.2
AT5G23630 Arabidopsis thaliana HOM05D003223 ORTHO05D004865 6.2e-206 721.1 545 71.6
BcaB07g29887 Brassica carinata HOM05D003223 ORTHO05D004865 8.1e-206 720.7 545 71.2
BraA09t36331Z Brassica rapa HOM05D003223 ORTHO05D004865 1.1e-205 720.3 546 71.6
A02p40880 Brassica napus HOM05D003223 ORTHO05D004865 2.4e-205 719.2 545 71.2
BcaC03g18022 Brassica carinata HOM05D003223 ORTHO05D004865 3.1e-205 718.8 545 71.2
C02p60780 Brassica napus HOM05D003223 ORTHO05D004865 3.1e-205 718.8 545 71.2
BolC2t12130H Brassica oleracea HOM05D003223 ORTHO05D004865 3.1e-205 718.8 545 71.2
CARHR189920 Cardamine hirsuta HOM05D003223 ORTHO05D004865 3.1e-205 718.8 548 72.8
Aa31LG11G3010 Aethionema arabicum HOM05D003223 ORTHO05D004865 1.5e-204 716.5 545 71.0
unitig_0.g1012 Utricularia gibba HOM05D003223 ORTHO05D004865 1.5e-204 716.5 548 68.8
BraA02t09034Z Brassica rapa HOM05D003223 ORTHO05D004865 2.0e-204 716.1 546 71.2
MSTRG.297 Avicennia marina HOM05D003223 ORTHO05D004865 9.9e-204 713.8 589 66.0
Aqoxy5G02750 Aquilegia oxysepala HOM05D003223 ORTHO05D004865 3.0e-200 702.2 545 69.4
Os05g0402800 Oryza sativa ssp. japonica HOM05D003223 ORTHO05D004865 2.8e-198 695.7 543 68.9
Lsat_1_v5_gn_4_179580 Lactuca sativa HOM05D003223 ORTHO05D004865 9.0e-197 690.6 531 69.3
HanXRQChr09g0265231 Helianthus annuus HOM05D003223 ORTHO05D004865 2.0e-196 689.5 535 69.3
SEGI_06157 Sequoiadendron giganteum HOM05D003223 ORTHO05D004865 5.8e-196 688.0 555 66.5
Zm00001eb349830 Zea mays HOM05D003223 ORTHO05D004865 2.2e-195 686.0 544 67.5
Peaxi162Scf00647g00521 Petunia axillaris HOM05D003223 ORTHO05D004865 5.4e-194 681.4 545 67.7
HPP92_022123 Vanilla planifolia HOM05D003223 ORTHO05D004865 1.6e-193 679.9 545 67.5
Zm00001eb287640 Zea mays HOM05D003223 ORTHO05D004865 2.1e-193 679.5 545 67.0
HPP92_022135 Vanilla planifolia HOM05D003223 ORTHO05D004865 7.9e-193 677.6 535 68.0
ECA232G4880 Erigeron canadensis HOM05D003223 ORTHO05D004865 8.7e-192 674.1 523 69.6
TAR544G0002 Trochodendron aralioides HOM05D003223 ORTHO05D004865 5.6e-191 671.4 474 74.3
FAN04G0579 Fragaria x ananassa HOM05D003223 ORTHO05D004865 3.4e-188 662.1 528 69.3
Thhalv10027626m.g Eutrema salsugineum HOM05D003223 ORTHO05D004865 5.5e-186 654.8 545 65.3
ATR0064G088 Amborella trichopoda HOM05D003223 ORTHO05D004865 4.3e-183 645.2 489 69.1
CDE02G1396 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 6.3e-174 614.8 468 70.3
AagrBONN_evm.TU.Sc2ySwM_368.2673 Anthoceros agrestis HOM05D003223 ORTHO05D004865 4.6e-169 598.6 557 60.0
SMO276G0045 Selaginella moellendorffii HOM05D003223 ORTHO05D004865 6.9e-165 584.7 542 60.1
Pp3c2_5380 Physcomitrium patens HOM05D003223 ORTHO05D004865 2.9e-163 579.3 559 57.6
Mapoly0002s0327 Marchantia polymorpha HOM05D003223 ORTHO05D004865 1.4e-162 577.0 580 58.1
CiPaw.15G184200 Carya illinoinensis HOM05D003223 ORTHO05D004865 7.7e-148 528.1 361 79.8
Sopen01g040530 Solanum pennellii HOM05D003223 ORTHO05D004865 8.5e-147 524.6 372 74.5
CBR_g48843 Chara braunii HOM05D003223 ORTHO05D004865 3.1e-141 506.1 573 51.8
C09p07570 Brassica napus HOM05D003223 ORTHO05D004865 9.4e-138 494.6 389 71.2
BolC9t53674H Brassica oleracea HOM05D003223 ORTHO05D004865 3.0e-136 489.6 386 71.0
SGA_v2.0_scaffold5281G54621 Striga asiatica HOM05D003223 ORTHO05D004865 3.1e-133 479.6 309 78.3
TAR636G0413 Trochodendron aralioides HOM05D003223 ORTHO05D004865 9.8e-127 458.0 278 82.7
Actinidia26635 Actinidia chinensis HOM05D003223 ORTHO05D004865 2.0e-111 407.1 326 68.4
TPR.G7796 Trifolium pratense HOM05D003223 ORTHO05D004865 4.9e-102 375.9 325 64.9
Cre17.g744447 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D004865 4.3e-98 362.8 567 43.0
VMungo1309G2105 Vigna mungo HOM05D003223 ORTHO05D004865 5.8e-95 352.4 331 64.0
CARHR190170 Cardamine hirsuta HOM05D003223 ORTHO05D004865 2.9e-94 350.1 239 74.5
Actinidia28935 Actinidia chinensis HOM05D003223 ORTHO05D004865 3.2e-93 346.7 305 63.0
BcaB04g19855 Brassica carinata HOM05D003223 ORTHO05D002974 1.1e-90 338.2 477 47.2
Actinidia19950 Actinidia chinensis HOM05D003223 ORTHO05D004865 2.0e-87 327.4 290 64.1
TAR633G2269 Trochodendron aralioides HOM05D003223 ORTHO05D004865 3.0e-83 313.5 185 84.9
TAR636G0043 Trochodendron aralioides HOM05D003223 ORTHO05D004865 1.5e-82 311.2 265 63.8
FAN02G4497 Fragaria x ananassa HOM05D001060 ORTHO05D000905 1.4e-77 294.7 244 68.4
GSVIVG01000234001 Vitis vinifera HOM05D003223 ORTHO05D004865 3.0e-75 287.0 239 66.9
MCO03G244 Micromonas commoda HOM05D003223 ORTHO05D004865 2.8e-73 280.4 541 36.0
Duzib106G1784 Durio zibethinus HOM05D003223 ORTHO05D004865 8.1e-73 278.9 180 82.2
Cfa027207 Carpinus fangiana HOM05D003223 ORTHO05D004865 8.4e-70 268.9 587 34.1
PRCOL_00004888 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 2.1e-60 237.7 533 32.6
TAR633G0290 Trochodendron aralioides HOM05D003223 ORTHO05D004865 7.9e-60 235.7 208 62.0
SGA_v2.0_scaffold2G01007 Striga asiatica HOM05D003223 ORTHO05D004865 5.7e-58 229.6 175 69.1
AagrBONN_evm.TU.Sc2ySwM_368.3036 Anthoceros agrestis HOM05D003223 ORTHO05D004865 5.0e-54 216.5 174 64.9
Actinidia20597 Actinidia chinensis HOM05D003223 ORTHO05D004865 6.5e-54 216.1 173 75.7
PRCOL_00006825 Prasinoderma coloniale HOM05D003223 ORTHO05D004865 8.8e-51 205.7 573 31.1
CDE04G2131 Ceratophyllum demersum HOM05D003223 ORTHO05D004865 1.1e-50 205.3 126 84.1
AagrBONN_evm.TU.Sc2ySwM_290.3 Anthoceros agrestis HOM05D003223 ORTHO05D004865 2.5e-50 204.1 196 58.2
AagrBONN_evm.TU.Sc2ySwM_368.1379 Anthoceros agrestis HOM05D003223 ORTHO05D004865 9.7e-50 202.2 196 57.7
MCO16G616 Micromonas commoda HOM05D003223 ORTHO05D004865 6.3e-49 199.5 628 29.5
AagrBONN_evm.TU.Sc2ySwM_368.2085 Anthoceros agrestis HOM05D003223 ORTHO05D004865 2.3e-43 181.0 200 53.0
AagrBONN_evm.TU.Sc2ySwM_94.8 Anthoceros agrestis HOM05D003223 ORTHO05D004865 2.0e-42 177.9 181 55.8
C09p07580 Brassica napus HOM05D002664 ORTHO05D002974 1.3e-41 175.3 113 75.2
AagrBONN_evm.TU.Sc2ySwM_297.1 Anthoceros agrestis HOM05D003223 ORTHO05D004865 7.7e-39 166.0 129 65.9
AagrBONN_evm.TU.Sc2ySwM_368.601 Anthoceros agrestis HOM05D003223 ORTHO05D004865 1.5e-37 161.8 195 50.8
BcaNung05205 Brassica carinata HOM05D003223 ORTHO05D039635 2.0e-31 141.4 111 66.7
Psat0s7774g0080 Pisum sativum HOM05D003223 ORTHO05D037353 6.5e-30 136.3 223 39.9
Psat7g005320 Pisum sativum HOM05D003223 ORTHO05D037353 7.2e-29 132.9 217 40.6
Actinidia19949 Actinidia chinensis HOM05D003223 ORTHO05D004865 2.3e-27 127.9 81 79.0
CAN.G1211.4 Capsicum annuum HOM05D003223 ORTHO05D004865 8.8e-19 99.4 148 48.0
Psat3g037800 Pisum sativum HOM05D003223 ORTHO05D004865 3.7e-17 94.0 61 77.0
Nitab4.5_0001903g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.5e-15 87.0 75 58.7
Cfa024590 Carpinus fangiana HOM05D003223 ORTHO05D014810 2.3e-14 84.7 499 22.2
Nitab4.5_0008354g0050 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.5e-13 81.3 50 74.0
DCAR_010872 Daucus carota HOM05D003223 ORTHO05D004865 4.2e-13 80.5 53 67.9
AagrBONN_evm.TU.Sc2ySwM_228.1261 Anthoceros agrestis HOM05D003223 ORTHO05D014810 2.8e-12 77.8 207 31.4
AagrBONN_evm.TU.Sc2ySwM_94.6 Anthoceros agrestis HOM05D003223 ORTHO05D004865 1.0e-11 75.9 58 69.0
Lsat_1_v5_gn_8_130720 Lactuca sativa HOM05D003223 ORTHO05D233219 4.4e-10 70.5 108 40.7
Sabra19G0000900 Salix brachista HOM05D003223 ORTHO05D349924 7.5e-10 69.7 162 38.3
BcaNung05206 Brassica carinata HOM05D003223 ORTHO05D039635 8.3e-09 66.2 85 48.2
SMO236G0068 Selaginella moellendorffii HOM05D003223 ORTHO05D014810 1.4e-08 65.5 144 30.6
Pp3c14_26389 Physcomitrium patens HOM05D003223 ORTHO05D014810 2.4e-08 64.7 365 20.8
Cre02.g093700 Chlamydomonas reinhardtii HOM05D003223 ORTHO05D014810 1.2e-07 62.4 203 25.1
Mapoly0155s0012 Marchantia polymorpha HOM05D003223 ORTHO05D014810 2.0e-07 61.6 477 20.1
Mapoly0013s0191 Marchantia polymorpha HOM05D003223 ORTHO05D014810 4.6e-07 60.5 162 28.4
Pp3c14_26380 Physcomitrium patens HOM05D003223 ORTHO05D014810 8.6e-06 56.2 385 20.0


User provided reference genes

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