Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1719.9 964 100.0
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1379.4 958 77.5
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1365.1 960 77.2
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 0.0e+00 1340.9 1038 71.7
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 0.0e+00 1237.6 973 67.6
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 0.0e+00 1223.8 948 69.6
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 0.0e+00 1214.9 949 68.9
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1213.0 909 75.9
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 0.0e+00 1212.2 971 72.6
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 0.0e+00 1209.9 954 73.9
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 0.0e+00 1203.7 961 72.6
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1202.2 953 72.5
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 0.0e+00 1202.2 914 72.5
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 0.0e+00 1196.4 967 68.4
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 0.0e+00 1196.0 948 73.2
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 0.0e+00 1188.3 943 68.3
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1186.0 943 72.5
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 0.0e+00 1184.9 949 72.6
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1184.5 959 66.6
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 0.0e+00 1181.0 965 69.4
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1178.3 945 68.3
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1174.1 947 71.3
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 0.0e+00 1173.3 956 72.5
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 0.0e+00 1171.8 967 67.8
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1171.4 892 74.0
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 0.0e+00 1169.1 988 67.1
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1167.9 957 66.0
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1166.0 948 65.6
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 0.0e+00 1164.8 972 66.0
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 0.0e+00 1163.7 911 72.0
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1163.3 946 70.3
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 0.0e+00 1161.0 946 71.1
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 0.0e+00 1158.3 907 73.1
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1152.5 942 70.6
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 0.0e+00 1152.1 947 65.9
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1151.7 907 72.7
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 0.0e+00 1151.3 894 68.1
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 0.0e+00 1150.2 907 72.5
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 0.0e+00 1150.2 946 70.8
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 0.0e+00 1147.1 890 73.8
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1144.0 945 65.6
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 0.0e+00 1143.3 888 73.2
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1143.3 953 65.9
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 0.0e+00 1138.3 959 69.7
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 0.0e+00 1137.9 889 73.7
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 0.0e+00 1136.7 887 66.7
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1124.4 889 68.4
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 0.0e+00 1122.5 890 68.1
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 0.0e+00 1120.9 965 64.7
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1115.9 951 64.4
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 0.0e+00 1115.1 889 68.3
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 0.0e+00 1113.6 861 68.5
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 0.0e+00 1113.6 969 69.0
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 0.0e+00 1112.8 980 66.2
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 0.0e+00 1109.4 899 71.4
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 0.0e+00 1107.0 982 63.7
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 0.0e+00 1106.7 969 63.9
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 0.0e+00 1104.0 955 64.8
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 0.0e+00 1095.9 889 72.3
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 0.0e+00 1090.5 892 70.5
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 0.0e+00 1083.9 969 61.5
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1082.8 963 66.6
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1081.6 895 70.4
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 0.0e+00 1077.0 974 62.1
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 1.6e-308 1062.8 973 60.7
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 3.6e-308 1061.6 879 62.9
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 1.0e-307 1060.1 944 60.1
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 1.8e-307 1059.3 978 60.2
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 2.3e-307 1058.9 1012 59.3
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 2.7e-303 1045.4 965 60.3
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 2.9e-302 1042.0 964 59.8
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 5.0e-302 1041.2 999 58.4
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 8.5e-302 1040.4 995 59.3
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 5.5e-301 1037.7 1007 58.0
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 9.8e-298 1026.9 947 60.2
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 6.5e-294 1014.2 961 61.6
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 1.5e-293 1013.1 970 63.6
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 9.4e-293 1010.4 899 61.4
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 7.5e-282 974.2 948 57.3
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 6.4e-281 971.1 954 56.7
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 7.0e-280 967.6 955 60.9
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 5.9e-279 964.5 951 60.7
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 1.3e-278 963.4 730 71.4
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.0e-274 949.5 952 60.8
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 2.0e-274 949.5 952 60.8
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 1.3e-273 946.8 907 62.3
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 9.2e-272 940.6 899 61.1
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 1.0e-270 937.2 956 60.0
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 1.9e-269 932.9 887 62.1
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 9.5e-269 930.6 950 59.5
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 3.6e-268 928.7 948 54.3
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 5.2e-267 924.9 909 60.8
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 1.5e-266 923.3 908 60.5
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 2.6e-266 922.5 909 60.7
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 9.8e-266 920.6 909 60.9
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 2.2e-265 919.5 908 60.9
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 9.2e-264 914.1 903 61.2
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 1.1e-261 907.1 906 56.8
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 4.0e-243 845.5 1014 48.8
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 1.1e-227 794.3 738 58.1
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 1.4e-219 767.3 973 49.4
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 1.8e-219 766.9 778 54.4
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 1.0e-182 644.8 837 46.1
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 2.3e-174 617.1 600 60.7
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 5.2e-174 615.9 930 46.5
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 9.2e-163 578.6 801 48.6
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.2e-135 488.4 507 53.5
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 3.9e-129 466.8 469 51.8
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 2.5e-128 464.2 396 60.9
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 3.9e-121 440.3 825 36.1
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 1.9e-91 341.7 860 31.7
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 9.4e-91 339.3 784 31.8
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 8.8e-89 332.8 297 61.6
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 2.8e-71 274.6 535 38.5
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 1.2e-66 259.2 881 26.9
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 5.0e-60 237.3 262 49.2
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 4.9e-55 220.7 287 43.6
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 4.5e-53 214.2 172 64.0
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 9.2e-30 136.7 84 79.8
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 2.2e-23 115.5 118 53.4
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 3.8e-23 114.8 67 77.6
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 2.7e-21 108.6 90 60.0
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 2.7e-21 108.6 66 81.8
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 3.5e-21 108.2 90 60.0
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 5.6e-19 100.9 197 37.1
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 2.4e-17 95.5 90 57.8
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 3.1e-17 95.1 90 57.8
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 1.2e-13 83.2 154 35.7
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 3.6e-10 71.6 37 86.5
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 2.6e-08 65.5 107 47.7
TAR622G0109 Trochodendron aralioides HOM05D048081 ORTHO05D051495 1.1e-06 60.1 55 56.4


User provided reference genes

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