Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G062500 Carya illinoinensis HOM05D006403 ORTHO05D008130 2.7e-132 475.3 238 100.0
Haze_17907 Corylus avellana HOM05D006403 ORTHO05D008130 1.0e-115 420.2 238 89.1
Cfa018202 Carpinus fangiana HOM05D006403 ORTHO05D008130 6.7e-115 417.5 238 88.7
QL02p034075 Quercus lobata HOM05D006403 ORTHO05D008130 4.2e-109 398.3 236 84.7
COL.COLO4_36653 Corchorus olitorius HOM05D006403 ORTHO05D008130 2.5e-106 389.0 236 85.2
Duzib177G0036 Durio zibethinus HOM05D006403 ORTHO05D008130 4.1e-104 381.7 234 83.3
Nn8g40759 Nelumbo nucifera HOM05D006403 ORTHO05D008130 9.1e-104 380.6 236 81.4
Thecc.08G202600 Theobroma cacao HOM05D006403 ORTHO05D008130 1.2e-103 380.2 237 83.1
Dinv41688 Davidia involucrata HOM05D006403 ORTHO05D008130 3.4e-103 378.6 237 80.6
RcHm_v2.0_Chr3g0495761 Rosa chinensis HOM05D006403 ORTHO05D008130 7.7e-103 377.5 235 80.0
GSVIVG01034503001 Vitis vinifera HOM05D006403 ORTHO05D008130 1.3e-102 376.7 230 82.2
FvH4_1g29740 Fragaria vesca HOM05D006403 ORTHO05D008130 1.1e-101 373.6 235 79.6
FAN19G1279 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.1e-101 373.6 235 79.6
FAN26G2688 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.1e-101 373.6 235 79.1
CSS0028864 Camellia sinensis var. sinensis HOM05D006403 ORTHO05D008130 1.9e-101 372.9 237 81.0
FAN28G0939 Fragaria x ananassa HOM05D006403 ORTHO05D008130 1.9e-101 372.9 235 79.1
Gohir.A13G121700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 2.5e-101 372.5 237 81.0
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 4.2e-101 371.7 234 79.1
Gohir.D13G125700 Gossypium hirsutum HOM05D006403 ORTHO05D008130 5.5e-101 371.3 226 83.2
Gorai.013G140800 Gossypium raimondii HOM05D006403 ORTHO05D008130 5.5e-101 371.3 226 83.2
ClCG09G010420 Citrullus lanatus HOM05D006403 ORTHO05D008130 9.4e-101 370.5 222 85.1
CANSAT78G0580 Cannabis sativa HOM05D006403 ORTHO05D008130 1.2e-100 370.2 223 83.0
Ciclev10001887m.g Citrus clementina HOM05D006403 ORTHO05D008130 2.7e-100 369.0 226 83.2
MELO3C023667.2 Cucumis melo HOM05D006403 ORTHO05D008130 4.7e-100 368.2 222 84.7
Rhsim08G0049700 Rhododendron simsii HOM05D006403 ORTHO05D008130 1.8e-99 366.3 235 80.0
MD12G1013600 Malus domestica HOM05D006403 ORTHO05D008130 2.3e-99 365.9 234 78.2
Oeu017876.2 Olea europaea HOM05D006403 ORTHO05D008130 3.0e-99 365.5 226 83.2
TWI32G0485 Tripterygium wilfordii HOM05D006403 ORTHO05D008130 3.0e-99 365.5 237 77.6
FAN23G0108 Fragaria x ananassa HOM05D006403 ORTHO05D008130 3.9e-99 365.2 235 77.9
CsaV3_7G024130 Cucumis sativus L. HOM05D006403 ORTHO05D008130 5.1e-99 364.8 222 83.8
Hma1.2p1_0072F.1_g038220 Hydrangea macrophylla HOM05D006403 ORTHO05D008130 5.1e-99 364.8 235 79.1
MD14G1011000 Malus domestica HOM05D006403 ORTHO05D008130 3.3e-98 362.1 236 77.5
PGR042G3834 Punica granatum HOM05D006403 ORTHO05D008130 3.3e-98 362.1 226 82.7
MBI17_g12885_MAGBIO Magnolia biondii HOM05D006403 ORTHO05D008130 5.7e-98 361.3 263 70.7
Potri.019G085200 Populus trichocarpa HOM05D006403 ORTHO05D008130 1.7e-97 359.8 226 80.5
Prupe.7G018000 Prunus persica HOM05D006403 ORTHO05D008130 1.7e-97 359.8 237 78.1
Sed0020052 Sechium edule HOM05D006403 ORTHO05D008130 1.7e-97 359.8 222 82.9
Eucgr.F02626 Eucalyptus grandis HOM05D006403 ORTHO05D008130 2.8e-97 359.0 249 77.1
Nitab4.5_0000159g0220 Nicotiana tabacum HOM05D006403 ORTHO05D008130 3.7e-97 358.6 229 78.2
Sc23g0004870 Simmondsia chinensis HOM05D006403 ORTHO05D008130 3.7e-97 358.6 231 80.5
Lsat_1_v5_gn_1_12940 Lactuca sativa HOM05D006403 ORTHO05D008130 4.8e-97 358.2 233 79.0
Peaxi162Scf00495g00011 Petunia axillaris HOM05D006403 ORTHO05D008130 8.2e-97 357.5 229 78.2
Potri.013G114500 Populus trichocarpa HOM05D006403 ORTHO05D008130 8.2e-97 357.5 226 81.4
Solyc11g017200.2 Solanum lycopersicum HOM05D006403 ORTHO05D008130 8.2e-97 357.5 229 78.6
Sopen11g009110 Solanum pennellii HOM05D006403 ORTHO05D008130 8.2e-97 357.5 229 78.6
Manes.18G099900 Manihot esculenta HOM05D006403 ORTHO05D008130 1.4e-96 356.7 232 79.7
Duzib116G0580 Durio zibethinus HOM05D006403 ORTHO05D008130 2.4e-96 355.9 237 78.1
ECA233G3842 Erigeron canadensis HOM05D006403 ORTHO05D008130 2.4e-96 355.9 226 80.1
PSO675G8117 Papaver somniferum HOM05D006403 ORTHO05D008130 3.1e-96 355.5 236 75.4
HanXRQChr02g0040151 Helianthus annuus HOM05D006403 ORTHO05D008130 5.3e-96 354.8 238 76.9
PSO732G0029 Papaver somniferum HOM05D006403 ORTHO05D008130 5.3e-96 354.8 236 75.8
PGSC0003DMG400009235 Solanum tuberosum HOM05D006403 ORTHO05D008130 9.1e-96 354.0 229 77.7
CAN.G61.29 Capsicum annuum HOM05D006403 ORTHO05D008130 1.2e-95 353.6 218 80.7
arahy.Tifrunner.gnm1.ann1.RC57KJ Arachis hypogaea HOM05D006403 ORTHO05D008130 1.5e-95 353.2 238 75.6
MSTRG.25437 Avicennia marina HOM05D006403 ORTHO05D008130 3.4e-95 352.1 234 76.9
AUR62013765 Chenopodium quinoa HOM05D006403 ORTHO05D008130 3.4e-95 352.1 232 78.4
Lj7A297T43 Lonicera japonica HOM05D006403 ORTHO05D008130 4.5e-95 351.7 248 73.0
AUR62023390 Chenopodium quinoa HOM05D006403 ORTHO05D008130 1.3e-94 350.1 232 77.6
SGA_v2.0_scaffold24G10549 Striga asiatica HOM05D006403 ORTHO05D008130 1.7e-94 349.7 216 81.9
Aqoxy7G00855 Aquilegia oxysepala HOM05D006403 ORTHO05D008130 2.9e-94 349.0 232 76.7
Glyma.20G176400 Glycine max HOM05D006403 ORTHO05D008130 5.0e-94 348.2 233 76.4
Actinidia29416 Actinidia chinensis HOM05D006403 ORTHO05D008130 1.1e-93 347.1 219 79.9
ATR1127G194 Amborella trichopoda HOM05D006403 ORTHO05D008130 1.1e-93 347.1 212 81.1
Lalb_Chr19g0129801 Lupinus albus HOM05D006403 ORTHO05D008130 2.5e-93 345.9 220 77.3
Atru.chr13.1807 Acer truncatum HOM05D006403 ORTHO05D008130 4.2e-93 345.1 238 74.8
Atru.chr13.1815 Acer truncatum HOM05D006403 ORTHO05D008130 4.2e-93 345.1 238 74.8
Phvul.007G090400 Phaseolus vulgaris HOM05D006403 ORTHO05D008130 4.2e-93 345.1 238 74.8
Cc00_g04840 Coffea canephora HOM05D006403 ORTHO05D008130 5.5e-93 344.7 208 82.7
Glyma.10G215300 Glycine max HOM05D006403 ORTHO05D008130 7.2e-93 344.4 238 74.8
Lj5g0000123 Lotus japonicus HOM05D006403 ORTHO05D008130 7.2e-93 344.4 236 73.3
SalBow7G4031 Salvia bowleyana HOM05D006403 ORTHO05D008130 9.4e-93 344.0 218 80.3
Oeu000555.1 Olea europaea HOM05D006403 ORTHO05D008130 1.2e-92 343.6 226 79.6
arahy.Tifrunner.gnm1.ann1.3A12IQ Arachis hypogaea HOM05D006403 ORTHO05D008130 2.1e-92 342.8 229 75.5
Medtr1g096230 Medicago truncatula HOM05D006403 ORTHO05D008130 2.1e-92 342.8 237 72.2
Hund27413 Selenicereus undatus HOM05D006403 ORTHO05D008130 2.1e-92 342.8 233 77.7
Lalb_Chr01g0010051 Lupinus albus HOM05D006403 ORTHO05D008130 2.7e-92 342.4 216 78.7
AL1G36240 Arabidopsis lyrata HOM05D006403 ORTHO05D008130 1.0e-91 340.5 229 78.6
BraA09t39690Z Brassica rapa HOM05D006403 ORTHO05D008130 1.0e-91 340.5 222 80.6
Sp1g20210 Schrenkiella parvula HOM05D006403 ORTHO05D008130 1.0e-91 340.5 222 80.2
A09p42040 Brassica napus HOM05D006403 ORTHO05D008130 1.4e-91 340.1 222 80.6
Thhalv10008318m.g Eutrema salsugineum HOM05D006403 ORTHO05D008130 1.4e-91 340.1 208 83.7
C05p21830 Brassica napus HOM05D006403 ORTHO05D008130 1.8e-91 339.7 222 80.2
THA.LOC104800111 Tarenaya hassleriana HOM05D006403 ORTHO05D008130 1.8e-91 339.7 234 76.5
Aa31LG7G6600 Aethionema arabicum HOM05D006403 ORTHO05D008130 3.0e-91 339.0 229 78.2
BolC5t30876H Brassica oleracea HOM05D006403 ORTHO05D008130 3.0e-91 339.0 222 79.7
Sabra13G0096800 Salix brachista HOM05D005981 ORTHO05D008130 3.0e-91 339.0 229 78.2
A07p14250 Brassica napus HOM05D006403 ORTHO05D008130 6.7e-91 337.8 229 77.7
AT1G22700 Arabidopsis thaliana HOM05D006403 ORTHO05D008130 8.8e-91 337.4 229 77.7
Sabra19G0096200 Salix brachista HOM05D001638 ORTHO05D005197 8.8e-91 337.4 254 69.7
Carub.0001s2222 Capsella rubella HOM05D006403 ORTHO05D008130 2.0e-90 336.3 206 83.5
Ca_10605_v3 Cicer arietinum L. HOM05D006403 ORTHO05D008130 2.0e-90 336.3 231 72.7
Psat6g186640 Pisum sativum HOM05D006403 ORTHO05D008130 7.4e-90 334.3 235 71.5
C07p20970 Brassica napus HOM05D006403 ORTHO05D008130 9.7e-90 334.0 230 77.4
HPP92_025360 Vanilla planifolia HOM05D006403 ORTHO05D008130 9.7e-90 334.0 218 78.0
EL10Ac1g00740 Beta vulgaris HOM05D006403 ORTHO05D008130 1.7e-89 333.2 232 74.6
BcaB03g14190 Brassica carinata HOM05D006403 ORTHO05D008130 2.2e-89 332.8 222 78.8
BraA07t29182Z Brassica rapa HOM05D006403 ORTHO05D008130 2.8e-89 332.4 229 76.9
CARHR023070 Cardamine hirsuta HOM05D006403 ORTHO05D008130 2.8e-89 332.4 222 78.4
Migut.C01242 Erythranthe guttata HOM05D006403 ORTHO05D008130 3.7e-89 332.0 218 75.2
vmacro18286 Vaccinium macrocarpon HOM05D006403 ORTHO05D008130 1.7e-86 323.2 318 57.9
BolC7t42628H Brassica oleracea HOM05D006403 ORTHO05D008130 5.0e-86 321.6 230 75.2
BcaC06g34984 Brassica carinata HOM05D006403 ORTHO05D008130 3.2e-85 318.9 210 79.5
CDE07G1616 Ceratophyllum demersum HOM05D006403 ORTHO05D008130 7.2e-85 317.8 189 83.1
Cpa.g.sc66.55 Carica papaya HOM05D006403 ORTHO05D008130 5.3e-80 301.6 165 91.5
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 6.5e-78 294.7 225 70.7
Zm00001eb320270 Zea mays HOM05D006403 ORTHO05D008130 3.0e-75 285.8 210 71.9
unitig_747.g21467 Utricularia gibba HOM05D006403 ORTHO05D008130 1.5e-74 283.5 234 64.5
SEGI_04324 Sequoiadendron giganteum HOM05D006403 ORTHO05D008130 6.3e-73 278.1 218 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2277 Anthoceros agrestis HOM05D006403 ORTHO05D008130 6.1e-68 261.5 196 66.3
BcaB03g14188 Brassica carinata HOM05D006403 ORTHO05D008130 8.0e-68 261.2 222 67.1
Pp3c2_18600 Physcomitrium patens HOM05D006403 ORTHO05D008130 1.6e-63 246.9 199 62.3
TPR.G1762 Trifolium pratense HOM05D006403 ORTHO05D008130 1.0e-62 244.2 142 82.4
Pp3c1_20680 Physcomitrium patens HOM05D006403 ORTHO05D008130 4.3e-53 212.2 156 64.1
CBR_g38402 Chara braunii HOM05D006403 ORTHO05D008130 9.5e-53 211.1 191 56.5
Mapoly0015s0041 Marchantia polymorpha HOM05D006403 ORTHO05D008130 2.6e-50 203.0 182 55.5
SMO118G0451 Selaginella moellendorffii HOM05D006403 ORTHO05D008130 3.4e-50 202.6 204 51.0
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 2.1e-47 193.4 132 77.3
Cre12.g524300 Chlamydomonas reinhardtii HOM05D006403 ORTHO05D008130 6.0e-47 191.8 180 52.2
MCO16G319 Micromonas commoda HOM05D006403 ORTHO05D008130 8.6e-46 188.0 178 51.1
RcHm_v2.0_Chr7g0219671 Rosa chinensis HOM05D006403 ORTHO05D008130 9.9e-42 174.5 143 65.7
RcHm_v2.0_Chr2g0092511 Rosa chinensis HOM05D006403 ORTHO05D008130 7.3e-37 158.3 158 58.2
PRCOL_00002033 Prasinoderma coloniale HOM05D006403 ORTHO05D008130 2.2e-25 120.2 142 40.1
Hma1.2p1_0072F.1_g038240 Hydrangea macrophylla HOM05D006403 ORTHO05D228046 2.9e-25 119.8 92 69.6
RcHm_v2.0_Chr7g0199541 Rosa chinensis HOM05D006403 ORTHO05D008130 7.8e-23 111.7 64 85.9
TPR.G20530 Trifolium pratense HOM05D006403 ORTHO05D008130 1.2e-18 97.8 89 56.2
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 9.9e-18 94.7 53 86.8
Lalb_Chr05g0214601 Lupinus albus HOM05D002462 ORTHO05D002893 1.3e-06 57.8 126 25.4
Glyma.11G030500 Glycine max HOM05D002462 ORTHO05D002893 8.7e-06 55.1 126 25.4


User provided reference genes

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