Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 4.2e-124 448.0 217 100.0
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 5.9e-102 374.4 217 82.9
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 1.2e-97 360.1 217 79.7
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 2.5e-92 342.4 193 82.9
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 4.7e-91 338.2 217 74.7
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 4.0e-90 335.1 217 74.7
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 3.7e-88 328.6 217 70.5
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 2.7e-86 322.4 217 72.4
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.7e-86 322.4 217 72.4
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 7.3e-84 314.3 217 71.0
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 1.6e-83 313.2 217 67.7
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 2.1e-83 312.8 217 67.7
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 1.4e-82 310.1 217 67.3
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 1.4e-82 310.1 217 67.3
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 4.0e-82 308.5 201 71.1
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 4.0e-82 308.5 217 67.7
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 5.2e-82 308.1 204 75.5
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 4.4e-81 305.1 217 68.7
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 1.7e-80 303.1 217 68.2
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 2.2e-80 302.8 222 67.1
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 1.9e-79 299.7 217 67.7
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 7.8e-78 294.3 217 65.9
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 7.8e-78 294.3 217 64.1
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 1.3e-77 293.5 217 65.4
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 1.3e-77 293.5 217 64.1
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 1.3e-77 293.5 219 63.5
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 2.3e-77 292.7 217 65.4
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 2.3e-77 292.7 217 65.0
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 3.9e-77 292.0 217 65.0
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 3.9e-77 292.0 219 63.5
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 3.9e-77 292.0 217 62.2
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 6.6e-77 291.2 217 65.4
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 6.6e-77 291.2 217 63.6
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 8.6e-77 290.8 217 65.9
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 4.3e-76 288.5 217 65.4
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 7.3e-76 287.7 217 65.4
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 7.3e-76 287.7 218 66.5
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 9.5e-76 287.3 217 65.4
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 2.1e-75 286.2 217 63.1
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 2.1e-75 286.2 217 62.2
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 2.8e-75 285.8 217 63.6
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 3.6e-75 285.4 217 64.1
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 3.6e-75 285.4 215 66.5
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 6.2e-75 284.6 217 63.1
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 6.2e-75 284.6 217 63.6
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 1.8e-74 283.1 217 61.8
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 2.3e-74 282.7 202 68.8
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 2.3e-74 282.7 194 69.1
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 2.3e-74 282.7 218 61.5
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 2.0e-73 279.6 218 61.9
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 3.4e-73 278.9 220 61.8
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 4.4e-73 278.5 219 62.1
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 2.9e-72 275.8 221 62.9
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 1.4e-71 273.5 212 62.7
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 3.2e-71 272.3 190 68.9
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 4.1e-71 271.9 217 61.8
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 7.1e-71 271.2 193 64.2
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 2.7e-70 269.2 194 69.1
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 1.7e-69 266.5 167 73.7
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 1.5e-68 263.5 217 58.1
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 1.9e-68 263.1 174 70.1
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 2.5e-68 262.7 218 62.8
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 4.7e-67 258.5 223 57.8
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 8.1e-67 257.7 219 57.5
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 8.1e-67 257.7 217 60.4
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 1.1e-66 257.3 219 59.8
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 3.1e-66 255.8 218 58.3
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 3.1e-66 255.8 217 57.6
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 4.0e-66 255.4 218 60.1
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 8.9e-66 254.2 217 58.5
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 1.2e-65 253.8 218 57.8
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 1.2e-65 253.8 217 58.1
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 1.5e-65 253.4 218 58.7
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 2.0e-65 253.1 219 58.4
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 1.3e-64 250.4 218 56.9
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 3.8e-64 248.8 215 57.2
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 4.9e-64 248.4 224 58.9
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 2.4e-63 246.1 221 57.5
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 3.2e-63 245.7 219 56.2
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 7.1e-63 244.6 217 57.1
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 1.2e-62 243.8 219 55.7
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 4.6e-62 241.9 219 56.2
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 6.0e-62 241.5 219 56.2
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 6.0e-62 241.5 219 56.2
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 7.8e-62 241.1 218 56.9
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 6.2e-59 231.5 218 52.8
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 1.3e-56 223.8 217 52.1
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 1.1e-55 220.7 144 70.8
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 1.4e-55 220.3 141 70.2
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 1.2e-54 217.2 199 56.3
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 3.0e-53 212.6 162 61.7
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 6.4e-48 194.9 220 45.5
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 6.4e-48 194.9 158 57.6
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 2.0e-41 173.3 134 56.0
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 1.1e-39 167.5 147 57.8
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 1.4e-39 167.2 143 50.3
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 2.4e-39 166.4 150 50.0
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 3.2e-39 166.0 234 41.5
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 1.5e-36 157.1 147 49.0
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 2.0e-33 146.7 164 43.9
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 1.7e-32 143.7 139 51.8
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 8.7e-29 131.3 82 74.4
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 2.4e-26 123.2 145 39.3
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 7.4e-20 101.7 52 80.8
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 8.2e-19 98.2 156 36.5
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 2.5e-15 86.7 54 77.8
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 3.9e-13 79.3 44 81.8
Haze_07210 Corylus avellana HOM05D004747 ORTHO05D164832 2.8e-11 73.2 42 76.2


User provided reference genes

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