Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G012500 Carya illinoinensis HOM05D004413 ORTHO05D005199 3.6e-219 764.6 384 100.0
Haze_03259 Corylus avellana HOM05D004413 ORTHO05D005199 2.9e-160 568.9 384 76.0
Cfa010719 Carpinus fangiana HOM05D004413 ORTHO05D005199 6.9e-154 547.7 384 75.5
QL04p000397 Quercus lobata HOM05D004413 ORTHO05D005199 1.1e-143 513.8 444 61.7
QL04p002426 Quercus lobata HOM05D004413 ORTHO05D005199 1.6e-142 510.0 422 64.2
MD07G1003300 Malus domestica HOM05D004413 ORTHO05D005199 1.3e-131 473.8 385 66.8
Manes.10G150400 Manihot esculenta HOM05D004413 ORTHO05D005199 2.9e-128 462.6 386 61.7
Thecc.01G415800 Theobroma cacao HOM05D004413 ORTHO05D005199 4.2e-127 458.8 388 62.4
Ciclev10031642m.g Citrus clementina HOM05D004413 ORTHO05D005199 1.2e-126 457.2 386 62.2
RcHm_v2.0_Chr7g0230361 Rosa chinensis HOM05D004413 ORTHO05D005199 1.6e-126 456.8 385 63.6
Gohir.A08G146400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 4.7e-126 455.3 392 61.2
MD02G1318000 Malus domestica HOM05D004413 ORTHO05D005199 1.8e-125 453.4 385 64.9
TWI09G1219 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 5.2e-125 451.8 385 61.3
Gohir.D08G167400 Gossypium hirsutum HOM05D004413 ORTHO05D005199 8.8e-125 451.1 392 61.0
Gorai.004G174800 Gossypium raimondii HOM05D004413 ORTHO05D005199 4.4e-124 448.7 392 60.7
TAR636G2532 Trochodendron aralioides HOM05D004413 ORTHO05D005199 4.4e-124 448.7 403 60.3
arahy.Tifrunner.gnm1.ann1.8FHU3N Arachis hypogaea HOM05D004413 ORTHO05D005199 7.5e-124 448.0 384 61.5
Gohir.A08G005500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 1.7e-123 446.8 392 60.7
arahy.Tifrunner.gnm1.ann1.X2RX6E Arachis hypogaea HOM05D004413 ORTHO05D005199 2.8e-123 446.0 384 61.5
Gohir.A01G019401 Gossypium hirsutum HOM05D004413 ORTHO05D005199 6.3e-123 444.9 387 60.7
GSVIVG01001402001 Vitis vinifera HOM05D004413 ORTHO05D005199 2.4e-122 443.0 383 61.1
FAN13G1137 Fragaria x ananassa HOM05D004413 ORTHO05D005199 3.1e-122 442.6 386 62.2
FAN18G0644 Fragaria x ananassa HOM05D004413 ORTHO05D005199 5.9e-121 438.3 386 61.9
FAN08G0618 Fragaria x ananassa HOM05D004413 ORTHO05D005199 1.0e-120 437.6 395 60.8
Duzib138G1189 Durio zibethinus HOM05D004413 ORTHO05D005199 1.3e-120 437.2 388 61.3
FvH4_5g32720 Fragaria vesca HOM05D004413 ORTHO05D005199 3.8e-120 435.6 386 61.7
Potri.001G228000 Populus trichocarpa HOM05D004413 ORTHO05D005199 5.0e-120 435.3 389 61.4
Atru.chr11.2687 Acer truncatum HOM05D004413 ORTHO05D005199 6.5e-120 434.9 390 60.5
Glyma.16G203400 Glycine max HOM05D004413 ORTHO05D005199 2.7e-118 429.5 384 59.1
Lalb_Chr19g0124241 Lupinus albus HOM05D004413 ORTHO05D005199 3.6e-118 429.1 388 59.0
COL.COLO4_30064 Corchorus olitorius HOM05D004413 ORTHO05D005199 4.0e-117 425.6 387 60.2
CSS0018065 Camellia sinensis var. sinensis HOM05D004413 ORTHO05D005199 1.5e-116 423.7 381 60.1
Glyma.09G152600 Glycine max HOM05D004413 ORTHO05D005199 5.7e-116 421.8 384 58.3
Medtr6g463300 Medicago truncatula HOM05D004413 ORTHO05D005199 1.1e-114 417.5 388 58.0
Lj2g0027526 Lotus japonicus HOM05D004413 ORTHO05D005199 7.7e-113 411.4 384 57.8
Sabra16G0135900 Salix brachista HOM05D004413 ORTHO05D005199 1.3e-112 410.6 403 58.1
CANSAT01G0573 Cannabis sativa HOM05D004413 ORTHO05D005199 3.8e-112 409.1 399 56.9
Prupe.2G005000 Prunus persica HOM05D004413 ORTHO05D005199 5.0e-112 408.7 386 60.6
Cpa.g.sc189.31 Carica papaya HOM05D004413 ORTHO05D005199 1.5e-111 407.1 360 59.7
CANSAT01G1789 Cannabis sativa HOM05D004413 ORTHO05D005199 1.9e-111 406.8 399 56.9
TPR.G25309 Trifolium pratense HOM05D004413 ORTHO05D005199 9.5e-111 404.4 385 56.6
ClCG09G003830 Citrullus lanatus HOM05D004413 ORTHO05D005199 1.2e-110 404.1 388 56.7
Phvul.004G126300 Phaseolus vulgaris HOM05D004413 ORTHO05D005199 2.1e-110 403.3 384 53.6
CANSAT64G0940 Cannabis sativa HOM05D004413 ORTHO05D005199 2.7e-110 402.9 414 55.1
Ca_02163_v3 Cicer arietinum L. HOM05D004413 ORTHO05D005199 2.6e-108 396.4 385 54.0
VMungo0464G1648 Vigna mungo HOM05D004413 ORTHO05D005199 3.4e-108 396.0 384 54.2
THA.LOC104826126 Tarenaya hassleriana HOM05D004413 ORTHO05D005199 3.7e-107 392.5 387 55.3
Sc17g0005470 Simmondsia chinensis HOM05D004413 ORTHO05D005199 6.3e-107 391.7 392 55.1
vmacro21162 Vaccinium macrocarpon HOM05D004413 ORTHO05D005199 2.4e-106 389.8 416 54.8
Sed0007945 Sechium edule HOM05D004413 ORTHO05D005199 4.1e-106 389.0 396 55.1
Oeu013591.1 Olea europaea HOM05D004413 ORTHO05D005199 5.4e-106 388.7 356 59.6
Dinv43918 Davidia involucrata HOM05D004413 ORTHO05D005199 7.0e-106 388.3 382 54.7
MSTRG.28094 Avicennia marina HOM05D004413 ORTHO05D005199 1.6e-105 387.1 388 54.6
TPR.G37653 Trifolium pratense HOM05D004413 ORTHO05D005199 1.6e-105 387.1 385 53.5
CsaV3_7G031400 Cucumis sativus L. HOM05D004413 ORTHO05D005199 5.9e-105 385.2 388 55.4
Aa31LG1G19950 Aethionema arabicum HOM05D004413 ORTHO05D005199 3.8e-104 382.5 386 53.6
Nn3g19386 Nelumbo nucifera HOM05D004413 ORTHO05D005199 6.6e-104 381.7 405 52.8
Carub.0001s0418 Capsella rubella HOM05D004413 ORTHO05D005199 1.2e-102 377.5 387 52.5
GSVIVG01037065001 Vitis vinifera HOM05D004413 ORTHO05D005199 6.1e-102 375.2 254 72.0
Psat1g110760 Pisum sativum HOM05D004413 ORTHO05D005199 3.0e-101 372.9 388 53.4
Rhsim01G0132100 Rhododendron simsii HOM05D004413 ORTHO05D005199 3.0e-101 372.9 473 48.0
Sed0010518 Sechium edule HOM05D004413 ORTHO05D005199 6.8e-101 371.7 388 54.4
PGR031G3941 Punica granatum HOM05D004413 ORTHO05D005199 2.6e-100 369.8 387 53.7
Psat6g015760 Pisum sativum HOM05D004413 ORTHO05D005199 6.4e-99 365.2 305 60.7
AT1G04945 Arabidopsis thaliana HOM05D004413 ORTHO05D005199 7.8e-97 358.2 387 52.2
Lalb_Chr19g0124231 Lupinus albus HOM05D004413 ORTHO05D005199 1.0e-96 357.8 272 63.6
AL1G14670 Arabidopsis lyrata HOM05D004413 ORTHO05D005199 2.3e-96 356.7 387 51.7
BcaC07g36870 Brassica carinata HOM05D004413 ORTHO05D005199 6.6e-96 355.1 388 51.0
Thhalv10007024m.g Eutrema salsugineum HOM05D004413 ORTHO05D005199 6.6e-96 355.1 397 51.4
Nitab4.5_0001006g0010 Nicotiana tabacum HOM05D004413 ORTHO05D005199 3.3e-95 352.8 383 52.5
Migut.N01644 Erythranthe guttata HOM05D004413 ORTHO05D005199 9.5e-95 351.3 384 52.3
C08p01610 Brassica napus HOM05D004413 ORTHO05D005199 1.6e-94 350.5 388 50.8
BolC8t46964H Brassica oleracea HOM05D004413 ORTHO05D005199 1.6e-94 350.5 388 50.8
Hma1.2p1_0038F.1_g024150 Hydrangea macrophylla HOM05D004413 ORTHO05D005199 2.8e-94 349.7 396 50.8
Hund04656 Selenicereus undatus HOM05D004413 ORTHO05D005199 6.2e-94 348.6 366 53.0
Nitab4.5_0000346g0070 Nicotiana tabacum HOM05D004413 ORTHO05D005199 1.0e-93 347.8 381 51.2
AUR62035034 Chenopodium quinoa HOM05D004413 ORTHO05D005199 4.0e-93 345.9 384 50.3
BcaB03g13464 Brassica carinata HOM05D004413 ORTHO05D005199 8.9e-93 344.7 388 50.0
CARHR004350 Cardamine hirsuta HOM05D004413 ORTHO05D005199 8.9e-93 344.7 388 47.9
Sp1g03790 Schrenkiella parvula HOM05D004413 ORTHO05D005199 8.9e-93 344.7 385 50.9
EL10Ac3g05776 Beta vulgaris HOM05D004413 ORTHO05D005199 2.0e-92 343.6 387 50.6
A08p36630 Brassica napus HOM05D004413 ORTHO05D005199 2.0e-92 343.6 389 49.4
BraA08t35565Z Brassica rapa HOM05D004413 ORTHO05D005199 2.0e-92 343.6 389 49.4
AUR62016087 Chenopodium quinoa HOM05D004413 ORTHO05D005199 3.4e-92 342.8 384 50.3
arahy.Tifrunner.gnm1.ann1.0XNQ2B Arachis hypogaea HOM05D004413 ORTHO05D005199 4.4e-92 342.4 379 51.2
MELO3C023518.2 Cucumis melo HOM05D004413 ORTHO05D005199 4.4e-92 342.4 387 51.9
SGA_v2.0_scaffold95G28780 Striga asiatica HOM05D004413 ORTHO05D005199 4.4e-92 342.4 384 52.3
Atru.chr1.1383 Acer truncatum HOM05D004413 ORTHO05D005199 3.7e-91 339.3 255 66.3
Aqoxy2G00074 Aquilegia oxysepala HOM05D004413 ORTHO05D005199 1.1e-90 337.8 386 50.8
CAN.G1393.6 Capsicum annuum HOM05D004413 ORTHO05D005199 1.1e-90 337.8 381 50.1
Cc02_g27150 Coffea canephora HOM05D004413 ORTHO05D005199 1.6e-89 334.0 393 49.4
Lsat_1_v5_gn_4_46341 Lactuca sativa HOM05D004413 ORTHO05D005199 1.6e-89 334.0 383 50.7
Peaxi162Scf01343g00011 Petunia axillaris HOM05D004413 ORTHO05D005199 1.6e-89 334.0 422 46.4
Lj9A624G21 Lonicera japonica HOM05D004413 ORTHO05D005199 1.3e-88 330.9 392 50.3
arahy.Tifrunner.gnm1.ann1.MVM3BY Arachis hypogaea HOM05D004413 ORTHO05D005199 3.9e-88 329.3 386 49.7
Solyc01g074020.3 Solanum lycopersicum HOM05D004413 ORTHO05D005199 1.6e-86 323.9 265 60.4
PSO170G4481 Papaver somniferum HOM05D004413 ORTHO05D005199 8.1e-86 321.6 385 49.1
CDE04G1207 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 8.9e-85 318.2 413 45.5
PSO210G0136 Papaver somniferum HOM05D004413 ORTHO05D005199 8.9e-85 318.2 385 49.1
PSO210G4410 Papaver somniferum HOM05D004413 ORTHO05D005199 2.0e-84 317.0 388 48.2
SHI15877 Sapria himalayana HOM05D004413 ORTHO05D005199 9.8e-84 314.7 368 49.2
CDE12G0144 Ceratophyllum demersum HOM05D004413 ORTHO05D005199 1.3e-83 314.3 413 45.0
HanXRQChr16g0520481 Helianthus annuus HOM05D004413 ORTHO05D005199 2.4e-82 310.1 499 40.5
Gohir.A11G220500 Gossypium hirsutum HOM05D004413 ORTHO05D005199 2.1e-81 307.0 292 56.2
Ah.07g208370 Amaranthus hybridus HOM05D004413 ORTHO05D005199 2.6e-76 290.0 368 47.0
Actinidia21569 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.4e-76 289.3 290 55.2
BcaC08g43081 Brassica carinata HOM05D004413 ORTHO05D005199 1.5e-71 274.2 257 55.6
A06p04180 Brassica napus HOM05D004413 ORTHO05D005199 1.2e-70 271.2 258 56.2
BraA06t23623Z Brassica rapa HOM05D004413 ORTHO05D005199 1.2e-70 271.2 258 55.8
C06p03410 Brassica napus HOM05D004413 ORTHO05D005199 1.6e-70 270.8 257 55.3
BolC6t35480H Brassica oleracea HOM05D004413 ORTHO05D005199 1.6e-70 270.8 257 55.3
HPP92_005742 Vanilla planifolia HOM05D004413 ORTHO05D005199 9.9e-68 261.5 371 42.6
PGSC0003DMG400006318 Solanum tuberosum HOM05D004413 ORTHO05D005199 1.7e-67 260.8 222 58.1
ATR0582G367 Amborella trichopoda HOM05D004413 ORTHO05D005199 3.8e-67 259.6 416 40.1
ECA234G1090 Erigeron canadensis HOM05D004413 ORTHO05D005199 6.4e-67 258.8 343 46.6
Lj9A625T17 Lonicera japonica HOM05D004413 ORTHO05D005199 6.2e-62 242.3 334 46.4
unitig_578.g16701 Utricularia gibba HOM05D004413 ORTHO05D005199 2.4e-58 230.3 233 50.6
Dinv43485 Davidia involucrata HOM05D004413 ORTHO05D005199 9.3e-58 228.4 167 66.5
Zm00001eb140340 Zea mays HOM05D004413 ORTHO05D005199 2.7e-57 226.9 302 42.4
Os01g0962500 Oryza sativa ssp. japonica HOM05D004413 ORTHO05D005199 1.8e-56 224.2 268 46.6
SEGI_33976 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 4.5e-52 209.5 262 46.2
SGA_v2.0_scaffold4G02237 Striga asiatica HOM05D004413 ORTHO05D005199 6.4e-51 205.7 175 58.9
PSO170G2986 Papaver somniferum HOM05D004413 ORTHO05D005199 6.0e-49 199.1 259 47.1
SMO351G0528 Selaginella moellendorffii HOM05D004413 ORTHO05D005199 4.5e-44 183.0 275 38.5
Sopen01g033590 Solanum pennellii HOM05D004413 ORTHO05D005199 4.2e-42 176.4 274 40.9
Pp3c11_18200 Physcomitrium patens HOM05D004413 ORTHO05D005199 7.1e-42 175.6 260 40.8
GSVIVG01027705001 Vitis vinifera HOM05D004413 ORTHO05D005199 9.3e-42 175.3 112 76.8
QL04p000430 Quercus lobata HOM05D004413 ORTHO05D005199 4.3e-39 166.4 215 47.4
DCAR_015691 Daucus carota HOM05D004413 ORTHO05D005199 5.3e-37 159.5 112 70.5
Mapoly0103s0075 Marchantia polymorpha HOM05D004413 ORTHO05D005199 6.9e-37 159.1 271 36.9
Cre01.g049400 Chlamydomonas reinhardtii HOM05D004413 ORTHO05D005199 2.7e-33 147.1 224 37.5
Sopen01g033580 Solanum pennellii HOM05D004413 ORTHO05D005199 2.7e-33 147.1 106 66.0
AagrBONN_evm.TU.Sc2ySwM_228.625 Anthoceros agrestis HOM05D004413 ORTHO05D005199 1.0e-32 145.2 260 38.5
CBR_g50781 Chara braunii HOM05D004413 ORTHO05D005199 1.1e-29 135.2 225 35.1
GSVIVG01027710001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-28 131.7 81 79.0
SEGI_03996 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 2.6e-28 130.6 212 38.2
Actinidia21570 Actinidia chinensis HOM05D004413 ORTHO05D005199 4.5e-28 129.8 75 78.7
Aa31LG1G19980 Aethionema arabicum HOM05D004413 ORTHO05D005199 7.7e-28 129.0 160 48.8
SEGI_10444 Sequoiadendron giganteum HOM05D004413 ORTHO05D005199 1.7e-27 127.9 212 38.7
DCAR_015690 Daucus carota HOM05D004413 ORTHO05D005199 1.4e-26 124.8 224 41.1
BraA09t42095Z Brassica rapa HOM05D004413 ORTHO05D005199 6.1e-25 119.4 107 50.5
TAR633G2579 Trochodendron aralioides HOM05D004413 ORTHO05D005199 2.2e-22 110.9 131 51.1
Actinidia15863 Actinidia chinensis HOM05D004413 ORTHO05D005199 8.2e-22 109.0 63 82.5
GSVIVG01018194001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.2e-22 109.0 86 59.3
GSVIVG01027698001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.8e-21 107.8 63 73.0
Actinidia15864 Actinidia chinensis HOM05D004413 ORTHO05D005199 7.2e-18 95.9 55 72.7
A08p37250 Brassica napus HOM05D004413 ORTHO05D005199 2.1e-17 94.4 51 84.3
GSVIVG01027714001 Vitis vinifera HOM05D004413 ORTHO05D005199 3.3e-15 87.0 164 38.4
GSVIVG01026105001 Vitis vinifera HOM05D004413 ORTHO05D005199 8.2e-14 82.4 65 58.5
GSVIVG01012403001 Vitis vinifera HOM05D004413 ORTHO05D005199 5.3e-13 79.7 55 65.5
GSVIVG01027696001 Vitis vinifera HOM05D004413 ORTHO05D005199 7.0e-13 79.3 48 70.8
Atru.chr1.1384 Acer truncatum HOM05D004413 ORTHO05D005199 2.0e-12 77.8 97 48.5
HanXRQChr11g0328201 Helianthus annuus HOM05D004413 ORTHO05D005199 2.0e-12 77.8 44 84.1
PRCOL_00005718 Prasinoderma coloniale HOM05D004413 ORTHO05D005199 1.3e-11 75.1 151 33.8
TWI73G0758 Tripterygium wilfordii HOM05D004413 ORTHO05D005199 1.7e-11 74.7 96 44.8
Manes.10G149900 Manihot esculenta HOM05D000073 ORTHO05D000033 6.5e-11 72.8 40 82.5
Nitab4.5_0003792g0060 Nicotiana tabacum HOM05D004413 ORTHO05D005199 4.2e-10 70.1 95 40.0
Hma1.2p1_0276F.1_g111190 Hydrangea macrophylla HOM05D005449 ORTHO05D006916 4.7e-09 66.6 46 60.9
Sc24g0000530 Simmondsia chinensis HOM05D004413 ORTHO05D005199 2.3e-08 64.3 148 35.8
GSVIVG01037069001 Vitis vinifera HOM05D004413 ORTHO05D005199 1.2e-07 62.0 44 65.9
Lju170C28T1 Lonicera japonica HOM05D004413 ORTHO05D005199 8.2e-06 55.8 78 47.4


User provided reference genes

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