Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 9.9e-181 636.7 335 100.0
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 9.7e-136 487.3 366 76.0
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 2.4e-126 456.1 271 87.1
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 3.3e-120 435.6 336 71.1
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 2.9e-116 422.5 342 69.9
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 6.5e-116 421.4 338 67.8
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 6.5e-116 421.4 338 68.3
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 2.5e-115 419.5 337 70.0
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 3.2e-115 419.1 253 85.0
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 5.5e-115 418.3 338 69.8
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 2.1e-114 416.4 334 68.9
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 3.0e-113 412.5 348 67.2
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 3.0e-113 412.5 260 81.2
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 4.0e-113 412.1 287 74.6
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 8.8e-113 411.0 338 66.3
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 8.8e-113 411.0 340 68.2
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-112 410.6 330 68.8
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 2.0e-112 409.8 332 68.1
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 3.3e-112 409.1 250 81.6
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 7.5e-112 407.9 291 74.9
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 7.5e-112 407.9 333 68.5
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 9.7e-112 407.5 307 71.0
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.7e-111 406.8 271 76.8
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 2.2e-111 406.4 251 81.3
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 4.8e-111 405.2 324 67.0
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.1e-110 404.1 251 81.3
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 1.1e-110 404.1 253 81.0
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.4e-110 402.9 253 81.0
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 2.4e-110 402.9 336 64.3
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 4.1e-110 402.1 253 79.8
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 5.3e-110 401.7 251 80.1
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 2.0e-109 399.8 332 66.0
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.0e-109 399.8 337 67.4
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 2.0e-109 399.8 326 67.8
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 2.0e-109 399.8 321 67.6
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.7e-109 399.4 340 65.3
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 2.7e-109 399.4 253 80.2
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 3.5e-109 399.1 251 79.3
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 5.9e-109 398.3 335 65.7
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 1.0e-108 397.5 249 79.9
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 1.3e-108 397.1 345 62.9
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 1.3e-108 397.1 340 63.8
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 3.8e-108 395.6 349 63.3
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 5.0e-108 395.2 253 79.4
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 5.0e-108 395.2 253 79.4
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 5.0e-108 395.2 316 67.1
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 6.5e-108 394.8 253 78.7
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 6.5e-108 394.8 251 78.9
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 8.5e-108 394.4 302 69.2
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 1.5e-107 393.7 337 65.3
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.5e-107 392.9 349 64.8
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 1.2e-106 390.6 305 68.2
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 1.6e-106 390.2 333 64.9
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 1.6e-106 390.2 260 78.1
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 3.6e-106 389.0 331 63.4
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 3.6e-106 389.0 331 64.4
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 8.0e-106 387.9 341 64.5
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 3.0e-105 386.0 250 76.4
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 4.0e-105 385.6 344 64.0
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 4.4e-104 382.1 320 63.1
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 4.4e-104 382.1 289 69.2
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 9.8e-104 380.9 331 64.0
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 2.2e-103 379.8 319 64.9
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 2.2e-103 379.8 338 62.4
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 8.3e-103 377.9 246 76.4
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.1e-102 377.5 324 63.9
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 2.4e-102 376.3 327 62.7
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 7.7e-101 371.3 327 62.4
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.0e-100 370.9 334 62.3
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 1.7e-100 370.2 322 62.4
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 2.3e-100 369.8 258 70.9
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 2.3e-100 369.8 328 62.5
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 2.3e-100 369.8 328 62.5
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 2.9e-100 369.4 253 72.7
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 5.0e-100 368.6 329 61.7
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 8.6e-100 367.9 334 61.4
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 1.1e-99 367.5 350 60.0
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 1.9e-99 366.7 252 72.6
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 1.9e-99 366.7 255 71.8
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 2.5e-99 366.3 335 64.5
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 4.2e-99 365.5 250 72.4
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 5.5e-99 365.2 321 62.0
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 7.2e-99 364.8 289 66.4
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 7.2e-99 364.8 251 72.5
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 4.7e-98 362.1 247 72.9
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 6.1e-98 361.7 290 65.2
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 6.1e-98 361.7 276 69.6
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 6.1e-98 361.7 319 60.5
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 8.0e-98 361.3 305 62.3
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 1.0e-97 360.9 303 65.0
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 9.8e-96 354.4 254 70.5
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.3e-95 354.0 419 53.0
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 7.3e-91 338.2 319 58.9
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 7.3e-91 338.2 318 58.5
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 1.2e-90 337.4 319 58.9
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 5.2e-89 332.0 318 57.9
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 3.7e-87 325.9 319 56.7
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 2.1e-82 310.1 278 61.5
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 1.1e-78 297.7 319 55.5
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 1.3e-76 290.8 307 53.1
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 5.0e-76 288.9 202 71.3
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 4.3e-75 285.8 269 59.1
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 6.6e-68 261.9 254 50.0
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 9.5e-67 258.1 344 44.2
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 4.7e-66 255.8 281 48.4
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 2.4e-65 253.4 168 77.4
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 3.6e-58 229.6 142 78.2
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 1.1e-57 228.0 239 49.8
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 4.0e-57 226.1 187 67.4
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 2.1e-53 213.8 226 50.0
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.0e-52 211.5 230 56.5
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 2.9e-47 193.4 183 57.4
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 5.4e-46 189.1 142 67.6
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 7.1e-46 188.7 178 59.0
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 5.6e-43 179.1 163 59.5
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 4.5e-40 169.5 183 55.7
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 1.1e-38 164.9 111 73.9
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 5.5e-38 162.5 184 51.1
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 1.0e-36 158.3 121 66.9
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 7.4e-35 152.1 104 69.2
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 2.4e-33 147.1 96 79.2
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.2e-32 144.8 107 69.2
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.3e-31 141.4 94 73.4
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 9.3e-30 135.2 75 88.0
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.1e-29 134.0 177 44.6
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.8e-25 120.9 83 69.9
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 1.2e-24 118.2 165 47.9
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 7.6e-24 115.5 81 72.8
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 1.0e-23 115.2 82 69.5
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 5.5e-22 109.4 201 31.3
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.6e-21 107.8 83 66.3
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.1e-19 101.7 148 43.9
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 2.5e-19 100.5 228 31.1
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.3e-18 98.2 93 59.1
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.8e-17 94.4 56 83.9
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 1.8e-17 94.4 56 78.6
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 5.3e-17 92.8 99 58.6
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 5.3e-17 92.8 50 88.0
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 6.9e-17 92.4 184 33.7
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 4.2e-14 83.2 148 37.2
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 2.3e-12 77.4 128 36.7
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 6.7e-12 75.9 62 64.5
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 8.8e-12 75.5 118 39.0
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 8.2e-10 68.9 39 74.4
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 7.7e-08 62.4 58 62.1


User provided reference genes

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