Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G143700 Carya illinoinensis HOM05D003766 ORTHO05D004607 4.9e-206 721.5 536 100.0
Cfa019652 Carpinus fangiana HOM05D003766 ORTHO05D004607 9.3e-181 637.5 534 83.9
Haze_18860 Corylus avellana HOM05D003766 ORTHO05D004607 6.6e-179 631.3 534 83.3
QL10p029803 Quercus lobata HOM05D003766 ORTHO05D004607 9.9e-175 617.5 534 89.3
Prupe.5G234000 Prunus persica HOM05D003766 ORTHO05D004607 8.7e-171 604.4 535 83.2
Dinv04134 Davidia involucrata HOM05D003766 ORTHO05D004607 1.3e-169 600.5 533 84.4
FAN13G1632 Fragaria x ananassa HOM05D003766 ORTHO05D004607 2.1e-169 599.7 533 79.0
Actinidia09075 Actinidia chinensis HOM05D003766 ORTHO05D004607 4.8e-169 598.6 531 81.5
Lalb_Chr09g0330351 Lupinus albus HOM05D003766 ORTHO05D004607 4.8e-169 598.6 528 84.7
Medtr8g107400 Medicago truncatula HOM05D003766 ORTHO05D004607 6.2e-169 598.2 536 84.1
FvH4_5g17420 Fragaria vesca HOM05D003766 ORTHO05D004607 1.1e-168 597.4 533 84.1
Atru.chr9.1710 Acer truncatum HOM05D003766 ORTHO05D004607 3.1e-168 595.9 531 82.7
Manes.06G005800 Manihot esculenta HOM05D003766 ORTHO05D004607 3.1e-168 595.9 534 83.9
Cpa.g.sc3.393 Carica papaya HOM05D003766 ORTHO05D004607 4.0e-168 595.5 535 78.9
FAN18G4514 Fragaria x ananassa HOM05D003766 ORTHO05D004607 5.3e-168 595.1 533 83.9
TPR.G1449 Trifolium pratense HOM05D003766 ORTHO05D004607 5.3e-168 595.1 536 79.3
Lj4g0008657 Lotus japonicus HOM05D003766 ORTHO05D004607 6.9e-168 594.7 536 78.7
GSVIVG01008448001 Vitis vinifera HOM05D003766 ORTHO05D004607 6.9e-168 594.7 533 72.8
arahy.Tifrunner.gnm1.ann1.679W5T Arachis hypogaea HOM05D003766 ORTHO05D004607 1.2e-167 594.0 534 85.2
TWI81G0458 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 1.5e-167 593.6 534 81.8
Ciclev10007659m.g Citrus clementina HOM05D003766 ORTHO05D004607 2.6e-167 592.8 531 79.7
FAN08G2416 Fragaria x ananassa HOM05D003766 ORTHO05D004607 3.4e-167 592.4 533 76.0
FAN04G2446 Fragaria x ananassa HOM05D003766 ORTHO05D004607 4.5e-167 592.0 533 83.5
PGR044G0562 Punica granatum HOM05D003766 ORTHO05D004607 4.5e-167 592.0 531 87.9
Eucgr.B00997 Eucalyptus grandis HOM05D003766 ORTHO05D004607 5.8e-167 591.7 527 78.4
CSS0048248 Camellia sinensis var. sinensis HOM05D003766 ORTHO05D004607 9.9e-167 590.9 525 84.0
RcHm_v2.0_Chr7g0178271 Rosa chinensis HOM05D003766 ORTHO05D004607 2.9e-166 589.3 535 71.4
Thecc.03G055500 Theobroma cacao HOM05D003766 ORTHO05D004607 1.1e-165 587.4 534 80.3
VMungo0251G1288 Vigna mungo HOM05D003766 ORTHO05D004607 1.1e-165 587.4 533 81.1
Duzib068G0750 Durio zibethinus HOM05D003766 ORTHO05D004607 1.9e-165 586.6 529 80.7
Phvul.002G330600 Phaseolus vulgaris HOM05D003766 ORTHO05D004607 2.4e-165 586.3 536 83.0
TWI60G0360 Tripterygium wilfordii HOM05D003766 ORTHO05D004607 5.5e-165 585.1 533 78.8
Ca_17184_v3 Cicer arietinum L. HOM05D003766 ORTHO05D004607 9.3e-165 584.3 536 82.6
Glyma.08G054900 Glycine max HOM05D003766 ORTHO05D004607 1.2e-164 583.9 531 76.1
Potri.015G038100 Populus trichocarpa HOM05D003766 ORTHO05D004607 1.2e-164 583.9 533 82.0
Cc04_g06210 Coffea canephora HOM05D003766 ORTHO05D004607 2.7e-164 582.8 533 76.7
arahy.Tifrunner.gnm1.ann1.G74QKM Arachis hypogaea HOM05D003766 ORTHO05D004607 7.9e-164 581.3 560 81.8
MD14G1236800 Malus domestica HOM05D003766 ORTHO05D004607 2.3e-163 579.7 530 81.1
Glyma.05G246700 Glycine max HOM05D003766 ORTHO05D004607 3.9e-163 578.9 533 83.5
DCAR_029422 Daucus carota HOM05D003766 ORTHO05D004607 4.3e-162 575.5 528 78.2
CAN.G843.53 Capsicum annuum HOM05D003766 ORTHO05D004607 5.6e-162 575.1 528 78.6
Nn3g18290 Nelumbo nucifera HOM05D003766 ORTHO05D004607 9.6e-162 574.3 531 81.5
ECA232G0010 Erigeron canadensis HOM05D003766 ORTHO05D004607 3.7e-161 572.4 527 79.7
MBI19_g04409_MAGBIO Magnolia biondii HOM05D003766 ORTHO05D004607 6.2e-161 571.6 527 76.7
SalBow7G0490 Salvia bowleyana HOM05D003766 ORTHO05D004607 6.2e-161 571.6 533 79.0
Gorai.007G003500 Gossypium raimondii HOM05D003766 ORTHO05D004607 8.1e-161 571.2 529 82.8
Lalb_Chr05g0221621 Lupinus albus HOM05D003766 ORTHO05D004607 8.1e-161 571.2 536 77.6
Gohir.A11G002900 Gossypium hirsutum HOM05D003766 ORTHO05D004607 1.4e-160 570.5 529 83.2
Sopen03g037630 Solanum pennellii HOM05D003766 ORTHO05D004607 1.8e-160 570.1 528 81.6
Gohir.D11G002500 Gossypium hirsutum HOM05D003766 ORTHO05D004607 3.1e-160 569.3 529 82.6
Psat4g000160 Pisum sativum HOM05D003766 ORTHO05D004607 4.0e-160 568.9 545 75.8
Solyc03g118670.3 Solanum lycopersicum HOM05D003766 ORTHO05D004607 4.0e-160 568.9 528 81.4
Migut.I00296 Erythranthe guttata HOM05D003766 ORTHO05D004607 2.6e-159 566.2 522 79.3
EL10Ac8g19505 Beta vulgaris HOM05D003766 ORTHO05D004607 3.4e-159 565.8 533 79.9
Potri.012G046300 Populus trichocarpa HOM05D003766 ORTHO05D004607 5.8e-159 565.1 533 80.9
Rhsim08G0126600 Rhododendron simsii HOM05D003766 ORTHO05D004607 7.6e-159 564.7 567 69.7
THA.LOC104813927 Tarenaya hassleriana HOM05D003766 ORTHO05D004607 7.6e-159 564.7 525 78.7
Lj5C158T14 Lonicera japonica HOM05D003766 ORTHO05D004607 2.2e-158 563.1 542 77.1
Sp1g16220 Schrenkiella parvula HOM05D003766 ORTHO05D004607 2.9e-158 562.8 528 77.7
BcaC05g25719 Brassica carinata HOM05D003766 ORTHO05D004607 1.9e-157 560.1 526 77.8
C05p16530 Brassica napus HOM05D003766 ORTHO05D004607 1.9e-157 560.1 526 77.8
BolC5t30350H Brassica oleracea HOM05D003766 ORTHO05D004607 1.9e-157 560.1 526 77.8
PSO478G2458 Papaver somniferum HOM05D003766 ORTHO05D004607 3.2e-157 559.3 536 79.3
CsaV3_1G007190 Cucumis sativus L. HOM05D003766 ORTHO05D004607 5.5e-157 558.5 529 77.7
Aqoxy3G02431 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 7.1e-157 558.1 533 76.4
A06p14270 Brassica napus HOM05D003766 ORTHO05D004607 7.1e-157 558.1 526 77.8
BraA06t24556Z Brassica rapa HOM05D003766 ORTHO05D004607 7.1e-157 558.1 526 77.8
CARHR018810 Cardamine hirsuta HOM05D003766 ORTHO05D004607 7.1e-157 558.1 530 77.9
Thhalv10006987m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 7.1e-157 558.1 526 77.6
Sc10g0009160 Simmondsia chinensis HOM05D003766 ORTHO05D004607 7.1e-157 558.1 536 81.3
SGA_v2.0_scaffold102G29891 Striga asiatica HOM05D003766 ORTHO05D004607 7.1e-157 558.1 539 77.2
BcaB07g31816 Brassica carinata HOM05D003766 ORTHO05D004607 9.3e-157 557.8 526 77.8
Hund06721 Selenicereus undatus HOM05D003766 ORTHO05D004607 1.6e-156 557.0 532 82.1
AL1G30630 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 2.1e-156 556.6 525 77.9
Aa31LG7G2830 Aethionema arabicum HOM05D003766 ORTHO05D004607 2.7e-156 556.2 519 78.0
Aa31LG4G3770 Aethionema arabicum HOM05D003766 ORTHO05D004607 1.8e-155 553.5 533 76.0
AUR62042013 Chenopodium quinoa HOM05D003766 ORTHO05D004607 1.8e-155 553.5 522 79.9
MELO3C002135.2 Cucumis melo HOM05D003766 ORTHO05D004607 1.8e-155 553.5 533 76.7
PSO017G5688 Papaver somniferum HOM05D003766 ORTHO05D004607 1.8e-155 553.5 528 79.0
Carub.0001s1787 Capsella rubella HOM05D003766 ORTHO05D004607 5.1e-155 552.0 526 77.4
AT1G18260 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 8.7e-155 551.2 525 77.1
ClCG04G010600 Citrullus lanatus HOM05D003766 ORTHO05D004607 1.1e-154 550.8 534 76.4
Sabra15G0036800 Salix brachista HOM05D003766 ORTHO05D004607 1.1e-154 550.8 532 80.3
MSTRG.11305 Avicennia marina HOM05D003766 ORTHO05D004607 1.5e-154 550.4 521 78.7
AUR62043006 Chenopodium quinoa HOM05D003766 ORTHO05D004607 2.5e-154 549.7 522 72.8
Sed0009438 Sechium edule HOM05D003766 ORTHO05D004607 4.3e-154 548.9 530 76.0
Oeu015089.1 Olea europaea HOM05D003766 ORTHO05D004607 9.6e-154 547.7 531 81.9
unitig_750.g28512 Utricularia gibba HOM05D003766 ORTHO05D004607 2.1e-153 546.6 526 72.2
Ah.14g085990 Amaranthus hybridus HOM05D003766 ORTHO05D004607 4.8e-153 545.4 532 78.9
Thhalv10018231m.g Eutrema salsugineum HOM05D003766 ORTHO05D004607 1.4e-152 543.9 525 76.6
Lj9A419T35 Lonicera japonica HOM05D003766 ORTHO05D004607 9.0e-152 541.2 529 81.9
CARHR066590 Cardamine hirsuta HOM05D003766 ORTHO05D004607 1.0e-150 537.7 525 76.2
CiPaw.16G093700 Carya illinoinensis HOM05D003766 ORTHO05D004607 2.9e-150 536.2 525 73.3
AL2G33320 Arabidopsis lyrata HOM05D003766 ORTHO05D004607 3.8e-150 535.8 525 76.0
HanXRQChr15g0492431 Helianthus annuus HOM05D003766 ORTHO05D004607 1.9e-149 533.5 508 72.6
ATR0753G133 Amborella trichopoda HOM05D003766 ORTHO05D004607 5.5e-149 531.9 521 80.4
Aqoxy3G00054 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.2e-148 530.8 531 68.5
Oeu046630.1 Olea europaea HOM05D003766 ORTHO05D004607 2.1e-148 530.0 576 66.1
Peaxi162Scf00314g00235 Petunia axillaris HOM05D003766 ORTHO05D004607 3.9e-147 525.8 528 78.6
Sabra12G0032400 Salix brachista HOM05D003766 ORTHO05D004607 5.1e-147 525.4 552 75.9
TAR622G0358 Trochodendron aralioides HOM05D003766 ORTHO05D004607 2.6e-143 513.1 521 65.6
Lsat_1_v5_gn_0_34021 Lactuca sativa HOM05D003766 ORTHO05D004607 5.0e-142 508.8 507 77.3
Atru.chr9.1724 Acer truncatum HOM05D003766 ORTHO05D004607 5.1e-139 498.8 462 84.2
SEGI_38105 Sequoiadendron giganteum HOM05D003766 ORTHO05D004607 2.4e-136 490.0 523 75.3
CDE05G3381 Ceratophyllum demersum HOM05D003766 ORTHO05D004607 9.1e-136 488.0 512 71.7
HanXRQChr17g0545731 Helianthus annuus HOM05D003766 ORTHO05D004607 2.6e-135 486.5 481 75.9
AT1G73570 Arabidopsis thaliana HOM05D003766 ORTHO05D004607 7.7e-135 485.0 525 59.4
HPP92_011105 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.3e-131 473.4 512 70.7
Sp5g28730 Schrenkiella parvula HOM05D003766 ORTHO05D004607 3.7e-129 466.1 525 71.0
Nitab4.5_0003401g0020 Nicotiana tabacum HOM05D003766 ORTHO05D004607 2.6e-127 459.9 475 84.0
Eucgr.B00877 Eucalyptus grandis HOM05D003766 ORTHO05D004607 3.0e-123 446.4 439 78.6
Oeu026275.1 Olea europaea HOM05D003766 ORTHO05D004607 1.2e-122 444.5 507 73.0
Nitab4.5_0004556g0010 Nicotiana tabacum HOM05D003766 ORTHO05D004607 4.4e-122 442.6 533 74.7
Zm00001eb011300 Zea mays HOM05D003766 ORTHO05D004607 1.5e-117 427.6 463 67.4
Mapoly0093s0082 Marchantia polymorpha HOM05D003766 ORTHO05D004607 2.7e-116 423.3 527 57.9
MD06G1227600 Malus domestica HOM05D003766 ORTHO05D004607 4.8e-113 412.5 380 83.2
Sed0018638 Sechium edule HOM05D003766 ORTHO05D004607 6.8e-107 392.1 381 82.9
SMO228G0037 Selaginella moellendorffii HOM05D003766 ORTHO05D004607 6.8e-107 392.1 512 55.3
Pp3c19_13490 Physcomitrium patens HOM05D003766 ORTHO05D004607 3.7e-105 386.3 510 56.1
Manes.06G005600 Manihot esculenta HOM05D003766 ORTHO05D004607 8.3e-105 385.2 387 80.6
Pp3c22_10650 Physcomitrium patens HOM05D003766 ORTHO05D004607 9.8e-98 361.7 503 54.1
TAR629G3071 Trochodendron aralioides HOM05D003766 ORTHO05D004607 6.4e-97 359.0 253 71.5
HanXRQChr14g0456281 Helianthus annuus HOM05D003766 ORTHO05D004607 2.7e-95 353.6 388 66.2
vmacro17777 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 3.1e-91 340.1 263 66.9
Pp3c19_15130 Physcomitrium patens HOM05D003766 ORTHO05D004607 1.7e-86 324.3 457 55.8
COL.COLO4_04795 Corchorus olitorius HOM05D003766 ORTHO05D004607 1.6e-79 301.2 218 82.1
AagrBONN_evm.TU.Sc2ySwM_228.854 Anthoceros agrestis HOM05D003766 ORTHO05D004607 3.5e-79 300.1 476 56.9
Carub.0002s2031 Capsella rubella HOM05D003766 ORTHO05D004607 2.4e-75 287.3 380 45.3
Aqoxy3G00039 Aquilegia oxysepala HOM05D003766 ORTHO05D004607 1.7e-73 281.2 392 68.4
vmacro17776 Vaccinium macrocarpon HOM05D003766 ORTHO05D004607 2.8e-68 263.8 154 85.1
HPP92_011088 Vanilla planifolia HOM05D003766 ORTHO05D004607 1.8e-67 261.2 284 85.6
TAR629G0485 Trochodendron aralioides HOM05D003766 ORTHO05D004607 5.2e-67 259.6 155 81.9
BolC2t09163H Brassica oleracea HOM05D003766 ORTHO05D004607 3.3e-61 240.4 319 69.6
BcaC04g22654 Brassica carinata HOM05D003766 ORTHO05D004607 4.5e-58 229.9 143 79.7
BcaB05g24801 Brassica carinata HOM05D003766 ORTHO05D004607 1.2e-55 221.9 234 51.3
Atru.chr9.1718 Acer truncatum HOM05D003766 ORTHO05D004607 2.1e-55 221.1 163 84.7
BcaC07g36877 Brassica carinata HOM05D003766 ORTHO05D004607 3.0e-54 217.2 143 75.5
Zm00001eb398230 Zea mays HOM05D003766 ORTHO05D004607 4.3e-53 213.4 157 67.5
BolC7t40944H Brassica oleracea HOM05D003766 ORTHO05D004607 2.6e-50 204.1 130 77.7
C09p56670 Brassica napus HOM05D003766 ORTHO05D004607 3.1e-43 180.6 111 80.2
Actinidia35129 Actinidia chinensis HOM05D003766 ORTHO05D004607 4.5e-42 176.8 289 77.2
Psat4g000240 Pisum sativum HOM05D003766 ORTHO05D004607 5.8e-42 176.4 188 54.3
BolC1t04841H Brassica oleracea HOM05D003766 ORTHO05D004607 4.9e-41 173.3 111 77.5
QL10p029813 Quercus lobata HOM05D003766 ORTHO05D004607 6.5e-41 172.9 119 73.9
Dinv12692 Davidia involucrata HOM05D003766 ORTHO05D004607 3.0e-38 164.1 82 91.5
C02p31190 Brassica napus HOM05D003766 ORTHO05D004607 7.4e-37 159.5 120 66.7
QL10p030223 Quercus lobata HOM05D003766 ORTHO05D004607 7.4e-37 159.5 155 58.1
CBR_g40334 Chara braunii HOM05D000019 ORTHO05D000002 4.1e-27 127.1 322 51.9
C02p31200 Brassica napus HOM05D003766 ORTHO05D004607 7.2e-24 116.3 131 45.0
HPP92_011087 Vanilla planifolia HOM05D003766 ORTHO05D004607 2.4e-19 101.3 79 63.3
Hma1.2p1_0127F.1_g059480 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.1e-19 100.5 65 78.5
Hma1.2p1_2524F.1_g323905 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.1e-19 100.5 65 78.5
Hma1.2p1_0759F.1_g213970 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 2.0e-18 98.2 73 71.2
Hma1.2p1_0502F.1_g167690 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 3.4e-18 97.4 74 70.3
C08p01510 Brassica napus HOM05D003766 ORTHO05D004607 5.9e-18 96.7 61 75.4
Cre03.g197400 Chlamydomonas reinhardtii HOM05D003766 ORTHO05D004607 3.9e-14 84.0 191 31.9
MCO08G236 Micromonas commoda HOM05D003766 ORTHO05D004607 2.4e-11 74.7 169 32.5
Sp5g28740 Schrenkiella parvula HOM05D000408 ORTHO05D004607 1.6e-10 72.0 169 31.4
PRCOL_00002904 Prasinoderma coloniale HOM05D003766 ORTHO05D004607 2.2e-09 68.2 179 26.8
BolC9t56024H Brassica oleracea HOM05D021712 ORTHO05D021656 2.1e-07 61.6 38 73.7
Hma1.2p1_0478F.1_g161250 Hydrangea macrophylla HOM05D003766 ORTHO05D004607 4.7e-07 60.5 35 77.1
BraA05t20732Z Brassica rapa HOM05D003766 ORTHO05D004607 1.4e-06 58.9 38 71.1
Cfa023117 Carpinus fangiana HOM05D016742 ORTHO05D028589 1.4e-06 58.9 169 29.0
COL.COLO4_04913 Corchorus olitorius HOM05D003766 ORTHO05D004607 3.0e-06 57.8 37 73.0


User provided reference genes

Program Settings